PDB Chemical Component 65B

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 65B

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 O17 1.428 1.357
C1 C2 1.479 1.390
C1 C6 1.477 1.389
O17 C13 1.480 1.356
C2 C2' 1.541 1.507
C2 C3 1.431 1.378
C2' H2'1 1.100 1.090
C2' H2'2 1.100 1.090
C2' H2'3 1.100 1.089
C3 C4 1.421 1.398
C3 H3 1.080 1.080
C4 C5 1.426 1.397
C4 C4' 1.428 1.432
C5 C6 1.434 1.378
C5 H5 1.081 1.079
C6 C6' 1.544 1.507
C6' H6'1 1.100 1.089
C6' H6'2 1.100 1.090
C6' H6'3 1.100 1.090
C13 N12 1.385 1.330
C13 C14 1.407 1.389
N12 C11 1.421 1.324
C11 N5 1.382 1.386
C11 N16 1.385 1.324
N5 C21 1.399 1.394
N5 HN5 1.000 0.970
N16 C15 1.382 1.330
C15 N18 1.324 1.386
C15 C14 1.440 1.394
N18 H181 1.000 0.970
N18 H182 1.000 0.970
C14 BR 1.799 1.891
C21 C22 1.522 1.391
C21 C26 1.419 1.391
C22 C23 1.453 1.376
C22 H22 1.080 1.080
C23 C24 1.453 1.398
C23 H23 1.080 1.080
C24 C25 1.438 1.397
C24 C27 1.435 1.432
C25 C26 1.431 1.376
C25 H25 1.080 1.081
C26 H26 1.081 1.080
C27 N27 1.172 1.136
C4' N4' 1.156 1.136

Bond Angles for 65B

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O17 C1 C2 120.5 119.8
O17 C1 C6 121.3 119.9
C1 O17 C13 110.7 118.0
C2 C1 C6 118.2 120.2
C1 C2 C2' 123.3 120.0
C1 C2 C3 119.9 120.0
C1 C6 C5 119.2 120.1
C1 C6 C6' 123.0 119.9
O17 C13 N12 120.9 120.4
O17 C13 C14 121.6 120.4
C2' C2 C3 116.8 120.0
C2 C2' H2'1 109.5 109.4
C2 C2' H2'2 109.5 109.5
C2 C2' H2'3 109.5 109.4
C2 C3 C4 120.9 119.9
C2 C3 H3 119.6 120.0
H2'1 C2' H2'2 109.5 109.4
H2'1 C2' H2'3 109.4 109.5
H2'2 C2' H2'3 109.5 109.6
C4 C3 H3 119.6 120.0
C3 C4 C5 120.3 119.8
C3 C4 C4' 119.4 120.1
C5 C4 C4' 120.3 120.1
C4 C5 C6 121.4 119.8
C4 C5 H5 119.3 120.0
C4 C4' N4' 177.4 179.9
C6 C5 H5 119.3 120.1
C5 C6 C6' 117.8 119.9
C6 C6' H6'1 109.5 109.5
C6 C6' H6'2 109.5 109.5
C6 C6' H6'3 109.5 109.5
H6'1 C6' H6'2 109.4 109.4
H6'1 C6' H6'3 109.4 109.5
H6'2 C6' H6'3 109.5 109.5
N12 C13 C14 117.6 119.2
C13 N12 C11 123.7 120.8
C13 C14 C15 119.7 118.4
C13 C14 BR 119.1 120.8
N12 C11 N5 123.5 119.1
N12 C11 N16 117.6 121.7
N5 C11 N16 118.8 119.1
C11 N5 C21 128.2 120.0
C11 N5 HN5 115.9 119.9
C11 N16 C15 121.2 120.8
C21 N5 HN5 115.9 120.0
N5 C21 C22 126.8 119.9
N5 C21 C26 115.2 119.9
N16 C15 N18 117.4 120.5
N16 C15 C14 120.3 119.1
N18 C15 C14 122.3 120.4
C15 N18 H181 109.5 120.0
C15 N18 H182 109.5 120.0
C15 C14 BR 121.2 120.8
H181 N18 H182 109.5 120.0
C22 C21 C26 118.0 120.2
C21 C22 C23 121.1 120.1
C21 C22 H22 119.4 120.0
C21 C26 C25 120.9 120.1
C21 C26 H26 119.6 120.0
C23 C22 H22 119.4 120.0
C22 C23 C24 117.3 119.9
C22 C23 H23 121.3 120.0
C24 C23 H23 121.4 120.0
C23 C24 C25 121.4 119.8
C23 C24 C27 121.1 120.1
C25 C24 C27 117.5 120.1
C24 C25 C26 121.3 119.9
C24 C25 H25 119.3 120.0
C24 C27 N27 177.9 180.0
C26 C25 H25 119.4 120.0
C25 C26 H26 119.6 120.0

Torsion Angles for 65B

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 C1 O17 C6 179.5 180.3
O17 C1 C2 C2' 0.4 360.0
O17 C1 C2 C3 179.8 180.0
O17 C1 C6 C5 180.3 179.8
O17 C1 C6 C6' 359.9 360.0
C1 O17 C13 N12 293.2 0.0
C1 O17 C13 C14 112.9 179.7
O17 C1 C2 C6 180.4 179.7
C2 C1 O17 C13 257.3 90.0
C2 C1 C6 C5 0.8 359.5
C2 C1 C6 C6' 180.4 179.7
C2' C2 C1 C3 180.6 180.0
C1 C2 C2' H2'1 89.7 90.0
C1 C2 C2' H2'2 209.7 210.0
C1 C2 C2' H2'3 329.7 330.1
C1 C2 C3 C4 0.5 359.9
C1 C2 C3 H3 180.5 180.0
O17 C1 C6 C2 179.5 180.3
C6 C1 O17 C13 77.8 269.8
C6 C1 C2 C2' 180.0 180.2
C6 C1 C2 C3 359.4 0.3
C4 C5 C6 C1 359.2 0.5
C1 C6 C5 H5 179.2 180.2
C5 C6 C1 C6' 180.4 179.8
C1 C6 C6' H6'1 90.2 90.1
C1 C6 C6' H6'2 210.2 210.0
C1 C6 C6' H6'3 330.2 330.0
C13 O17 C1 C2 257.3 90.0
C13 O17 C1 C6 77.8 269.8
N12 C13 O17 C14 180.3 180.3
O17 C13 N12 C11 179.6 180.0
O17 C13 C14 C15 179.9 179.8
O17 C13 C14 BR 359.5 0.0
C2' C2 C1 C6 180.0 180.2
C1 C2 C2' C3 179.4 180.0
C2' C2 C3 C4 180.0 180.0
C2' C2 C3 H3 360.0 0.0
H2'1 C2' C2 H2'2 240.0 240.1
H2'1 C2' C2 H2'3 120.0 120.0
H2'2 C2' C2 H2'3 240.0 239.9
C3 C2 C1 C6 359.4 0.3
C1 C2 C3 C2' 180.5 180.0
C3 C2 C2' H2'1 270.2 270.0
C3 C2 C2' H2'2 30.2 29.9
C3 C2 C2' H2'3 150.3 150.0
C4 C3 C2 H3 180.0 179.9
C2 C3 C4 C5 359.5 0.1
C2 C3 C4 C4' 180.1 180.0
H2'1 C2' C2 C3 270.2 270.0
C2 C2' H2'1 H2'2 120.0 119.9
C2 C2' H2'1 H2'3 240.0 240.1
H2'2 C2' H2'1 H2'3 120.0 120.1
H2'2 C2' C2 C3 30.2 29.9
C2 C2' H2'2 H2'1 240.0 240.1
C2 C2' H2'2 H2'3 120.0 120.0
H2'1 C2' H2'2 H2'3 240.0 239.9
H2'3 C2' C2 C3 150.3 150.0
C2 C2' H2'3 H2'1 120.0 119.9
C2 C2' H2'3 H2'2 240.0 240.0
H2'1 C2' H2'3 H2'2 120.0 120.0
C2 C3 C4 H3 180.0 180.1
C5 C4 C3 C4' 179.4 180.1
C3 C4 C5 C6 0.6 359.7
C3 C4 C5 H5 180.6 180.0
C3 C4 C4' N4' 135.8 36.5
C2 C3 H3 C4 180.0 179.9
H3 C3 C4 C5 179.5 180.0
H3 C3 C4 C4' 0.1 359.9
C1 C6 C5 C4 359.2 0.5
C5 C4 C3 H3 179.5 180.0
C3 C4 C5 C4' 180.6 179.9
C5 C4 C4' N4' 316.4 216.3
C6 C5 C4 H5 180.0 179.7
C4 C5 C6 C6' 179.6 180.3
C4' C4 C3 H3 0.1 359.9
C3 C4 C4' C5 179.4 180.1
C4' C4 C5 C6 180.0 179.8
C4' C4 C5 H5 0.0 0.1
C1 C6 C5 C6' 179.6 180.2
C6 C5 C4 C4' 180.0 179.8
C4 C5 C6 H5 180.0 180.3
C5 C6 C6' H6'1 269.8 270.2
C5 C6 C6' H6'2 29.8 30.2
C5 C6 C6' H6'3 149.9 150.2
H5 C5 C4 C4' 0.0 0.1
C4 C5 H5 C6 180.0 179.7
H5 C5 C6 C6' 359.6 0.0
C1 C6 C6' C5 180.4 179.8
C6' C6 C5 H5 359.6 0.0
H6'1 C6' C6 H6'2 240.0 240.1
H6'1 C6' C6 H6'3 120.0 120.0
H6'2 C6' C6 H6'3 240.0 240.0
C6 C6' H6'1 H6'2 120.0 120.0
C6 C6' H6'1 H6'3 240.0 239.9
H6'2 C6' H6'1 H6'3 120.0 120.0
C6 C6' H6'2 H6'1 240.0 240.0
C6 C6' H6'2 H6'3 120.0 120.0
H6'1 C6' H6'2 H6'3 240.1 240.0
C6 C6' H6'3 H6'1 120.0 120.0
C6 C6' H6'3 H6'2 240.0 240.0
H6'1 C6' H6'3 H6'2 120.0 120.0
O17 C13 N12 C14 179.7 179.7
N12 C13 C14 C15 359.6 359.5
N12 C13 C14 BR 179.2 179.7
C13 N12 C11 N5 180.3 180.0
C13 N12 C11 N16 0.6 359.9
O17 C13 C14 N12 180.3 180.3
C14 C13 N12 C11 359.9 0.3
N16 C15 C14 C13 0.5 0.4
N18 C15 C14 C13 180.7 180.3
C15 C14 C13 BR 180.4 179.8
C11 N12 C13 C14 359.9 0.3
N5 C11 N12 N16 179.6 180.1
N12 C11 N5 C21 345.3 174.4
N12 C11 N5 HN5 165.2 354.4
N12 C11 N16 C15 359.4 0.0
N12 C11 N5 N16 180.4 179.9
N5 C11 N16 C15 179.8 179.9
C21 N5 C11 HN5 180.0 180.0
C11 N5 C21 C22 85.4 146.2
C11 N5 C21 C26 265.2 326.0
N12 C11 N16 N5 179.7 180.1
N16 C11 N5 C21 164.9 354.5
N16 C11 N5 HN5 344.9 174.5
C11 N16 C15 N18 179.8 180.0
C11 N16 C15 C14 0.0 359.8
C21 N5 C11 N16 164.9 354.5
C11 N5 C21 HN5 180.0 180.0
C22 C21 N5 C26 180.2 180.2
N5 C21 C22 C23 180.2 180.1
N5 C21 C22 H22 0.2 360.0
N5 C21 C26 C25 179.8 179.7
N5 C21 C26 H26 359.8 360.0
HN5 N5 C11 N16 344.9 174.5
C11 N5 HN5 C21 180.0 180.0
HN5 N5 C21 C22 265.5 326.2
HN5 N5 C21 C26 85.2 146.0
C13 C14 C15 N16 0.5 0.4
N18 C15 N16 C14 179.8 180.2
N16 C15 N18 H181 360.0 0.2
N16 C15 N18 H182 120.0 180.0
N16 C15 C14 BR 180.9 180.2
C13 C14 C15 N18 180.7 180.3
N16 C15 N18 C14 180.2 179.8
N18 C15 C14 BR 1.1 0.1
H181 N18 C15 H182 240.0 180.1
C13 C14 C15 BR 179.6 180.2
N16 C15 C14 N18 179.8 180.2
C14 C15 N18 H181 179.7 180.3
C14 C15 N18 H182 299.8 0.2
H181 N18 C15 C14 179.7 180.3
C15 N18 H181 H182 120.0 179.9
H182 N18 C15 C14 299.8 0.2
C15 N18 H182 H181 240.0 180.1
C13 C14 BR C15 180.4 179.8
C22 C21 N5 HN5 265.5 326.2
N5 C21 C22 C26 179.8 179.8
C22 C21 C26 C25 359.6 359.5
C22 C21 C26 H26 179.6 179.7
C23 C22 C21 H22 180.0 180.1
C21 C22 C23 C24 359.8 359.9
C21 C22 C23 H23 179.8 180.0
C26 C21 N5 HN5 85.2 146.0
N5 C21 C26 C22 180.2 180.2
C26 C21 C22 C23 0.4 0.3
C26 C21 C22 H22 180.5 180.2
C24 C25 C26 C21 0.2 0.4
C21 C26 C25 H25 180.2 180.2
C25 C26 C21 H26 180.0 179.8
C23 C22 C21 C26 0.4 0.3
C21 C22 C23 H22 180.0 179.9
C24 C23 C22 H23 180.0 179.9
C22 C23 C24 C25 0.0 0.0
C22 C23 C24 C27 179.8 180.0
H22 C22 C21 C26 180.5 180.2
C21 C22 H22 C23 180.0 180.1
H22 C22 C23 C24 179.7 180.0
H22 C22 C23 H23 359.8 0.1
C24 C23 C22 H22 179.7 180.0
C22 C23 C24 H23 180.0 180.1
C25 C24 C23 C27 180.2 180.0
C23 C24 C25 C26 0.0 359.8
C23 C24 C25 H25 180.0 180.0
C23 C24 C27 N27 206.6 213.8
H23 C23 C22 H22 359.8 0.1
C22 C23 H23 C24 180.0 179.9
H23 C23 C24 C25 180.0 180.0
H23 C23 C24 C27 359.8 360.0
C21 C26 C25 C24 0.2 0.4
C25 C24 C23 H23 180.0 180.0
C23 C24 C25 C27 179.8 180.0
C25 C24 C27 N27 26.4 33.8
C26 C25 C24 H25 180.0 179.8
C24 C25 C26 H26 180.2 180.2
C27 C24 C23 H23 359.8 360.0
C23 C24 C27 C25 180.2 180.0
C27 C24 C25 C26 180.2 179.8
C27 C24 C25 H25 0.2 360.0
C21 C26 C25 H26 180.0 180.2
C26 C25 C24 C27 180.2 179.8
C24 C25 C26 H25 180.0 180.2
H25 C25 C24 C27 0.2 360.0
C24 C25 H25 C26 180.0 179.8
H25 C25 C26 H26 0.2 0.0
C21 C26 H26 C25 180.0 179.8
H26 C26 C25 H25 0.2 0.0