PDB Chemical Component 65B
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 65B
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C1 |
O17 |
1.428 |
1.357 |
C1 |
C2 |
1.479 |
1.390 |
C1 |
C6 |
1.477 |
1.389 |
O17 |
C13 |
1.480 |
1.356 |
C2 |
C2' |
1.541 |
1.507 |
C2 |
C3 |
1.431 |
1.378 |
C2' |
H2'1 |
1.100 |
1.090 |
C2' |
H2'2 |
1.100 |
1.090 |
C2' |
H2'3 |
1.100 |
1.089 |
C3 |
C4 |
1.421 |
1.398 |
C3 |
H3 |
1.080 |
1.080 |
C4 |
C5 |
1.426 |
1.397 |
C4 |
C4' |
1.428 |
1.432 |
C5 |
C6 |
1.434 |
1.378 |
C5 |
H5 |
1.081 |
1.079 |
C6 |
C6' |
1.544 |
1.507 |
C6' |
H6'1 |
1.100 |
1.089 |
C6' |
H6'2 |
1.100 |
1.090 |
C6' |
H6'3 |
1.100 |
1.090 |
C13 |
N12 |
1.385 |
1.330 |
C13 |
C14 |
1.407 |
1.389 |
N12 |
C11 |
1.421 |
1.324 |
C11 |
N5 |
1.382 |
1.386 |
C11 |
N16 |
1.385 |
1.324 |
N5 |
C21 |
1.399 |
1.394 |
N5 |
HN5 |
1.000 |
0.970 |
N16 |
C15 |
1.382 |
1.330 |
C15 |
N18 |
1.324 |
1.386 |
C15 |
C14 |
1.440 |
1.394 |
N18 |
H181 |
1.000 |
0.970 |
N18 |
H182 |
1.000 |
0.970 |
C14 |
BR |
1.799 |
1.891 |
C21 |
C22 |
1.522 |
1.391 |
C21 |
C26 |
1.419 |
1.391 |
C22 |
C23 |
1.453 |
1.376 |
C22 |
H22 |
1.080 |
1.080 |
C23 |
C24 |
1.453 |
1.398 |
C23 |
H23 |
1.080 |
1.080 |
C24 |
C25 |
1.438 |
1.397 |
C24 |
C27 |
1.435 |
1.432 |
C25 |
C26 |
1.431 |
1.376 |
C25 |
H25 |
1.080 |
1.081 |
C26 |
H26 |
1.081 |
1.080 |
C27 |
N27 |
1.172 |
1.136 |
C4' |
N4' |
1.156 |
1.136 |
Bond Angles for 65B
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
O17 |
C1 |
C2 |
120.5 |
119.8 |
O17 |
C1 |
C6 |
121.3 |
119.9 |
C1 |
O17 |
C13 |
110.7 |
118.0 |
C2 |
C1 |
C6 |
118.2 |
120.2 |
C1 |
C2 |
C2' |
123.3 |
120.0 |
C1 |
C2 |
C3 |
119.9 |
120.0 |
C1 |
C6 |
C5 |
119.2 |
120.1 |
C1 |
C6 |
C6' |
123.0 |
119.9 |
O17 |
C13 |
N12 |
120.9 |
120.4 |
O17 |
C13 |
C14 |
121.6 |
120.4 |
C2' |
C2 |
C3 |
116.8 |
120.0 |
C2 |
C2' |
H2'1 |
109.5 |
109.4 |
C2 |
C2' |
H2'2 |
109.5 |
109.5 |
C2 |
C2' |
H2'3 |
109.5 |
109.4 |
C2 |
C3 |
C4 |
120.9 |
119.9 |
C2 |
C3 |
H3 |
119.6 |
120.0 |
H2'1 |
C2' |
H2'2 |
109.5 |
109.4 |
H2'1 |
C2' |
H2'3 |
109.4 |
109.5 |
H2'2 |
C2' |
H2'3 |
109.5 |
109.6 |
C4 |
C3 |
H3 |
119.6 |
120.0 |
C3 |
C4 |
C5 |
120.3 |
119.8 |
C3 |
C4 |
C4' |
119.4 |
120.1 |
C5 |
C4 |
C4' |
120.3 |
120.1 |
C4 |
C5 |
C6 |
121.4 |
119.8 |
C4 |
C5 |
H5 |
119.3 |
120.0 |
C4 |
C4' |
N4' |
177.4 |
179.9 |
C6 |
C5 |
H5 |
119.3 |
120.1 |
C5 |
C6 |
C6' |
117.8 |
119.9 |
C6 |
C6' |
H6'1 |
109.5 |
109.5 |
C6 |
C6' |
H6'2 |
109.5 |
109.5 |
C6 |
C6' |
H6'3 |
109.5 |
109.5 |
H6'1 |
C6' |
H6'2 |
109.4 |
109.4 |
H6'1 |
C6' |
H6'3 |
109.4 |
109.5 |
H6'2 |
C6' |
H6'3 |
109.5 |
109.5 |
N12 |
C13 |
C14 |
117.6 |
119.2 |
C13 |
N12 |
C11 |
123.7 |
120.8 |
C13 |
C14 |
C15 |
119.7 |
118.4 |
C13 |
C14 |
BR |
119.1 |
120.8 |
N12 |
C11 |
N5 |
123.5 |
119.1 |
N12 |
C11 |
N16 |
117.6 |
121.7 |
N5 |
C11 |
N16 |
118.8 |
119.1 |
C11 |
N5 |
C21 |
128.2 |
120.0 |
C11 |
N5 |
HN5 |
115.9 |
119.9 |
C11 |
N16 |
C15 |
121.2 |
120.8 |
C21 |
N5 |
HN5 |
115.9 |
120.0 |
N5 |
C21 |
C22 |
126.8 |
119.9 |
N5 |
C21 |
C26 |
115.2 |
119.9 |
N16 |
C15 |
N18 |
117.4 |
120.5 |
N16 |
C15 |
C14 |
120.3 |
119.1 |
N18 |
C15 |
C14 |
122.3 |
120.4 |
C15 |
N18 |
H181 |
109.5 |
120.0 |
C15 |
N18 |
H182 |
109.5 |
120.0 |
C15 |
C14 |
BR |
121.2 |
120.8 |
H181 |
N18 |
H182 |
109.5 |
120.0 |
C22 |
C21 |
C26 |
118.0 |
120.2 |
C21 |
C22 |
C23 |
121.1 |
120.1 |
C21 |
C22 |
H22 |
119.4 |
120.0 |
C21 |
C26 |
C25 |
120.9 |
120.1 |
C21 |
C26 |
H26 |
119.6 |
120.0 |
C23 |
C22 |
H22 |
119.4 |
120.0 |
C22 |
C23 |
C24 |
117.3 |
119.9 |
C22 |
C23 |
H23 |
121.3 |
120.0 |
C24 |
C23 |
H23 |
121.4 |
120.0 |
C23 |
C24 |
C25 |
121.4 |
119.8 |
C23 |
C24 |
C27 |
121.1 |
120.1 |
C25 |
C24 |
C27 |
117.5 |
120.1 |
C24 |
C25 |
C26 |
121.3 |
119.9 |
C24 |
C25 |
H25 |
119.3 |
120.0 |
C24 |
C27 |
N27 |
177.9 |
180.0 |
C26 |
C25 |
H25 |
119.4 |
120.0 |
C25 |
C26 |
H26 |
119.6 |
120.0 |
Torsion Angles for 65B
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
O17 |
C6 |
179.5 |
180.3 |
O17 |
C1 |
C2 |
C2' |
0.4 |
360.0 |
O17 |
C1 |
C2 |
C3 |
179.8 |
180.0 |
O17 |
C1 |
C6 |
C5 |
180.3 |
179.8 |
O17 |
C1 |
C6 |
C6' |
359.9 |
360.0 |
C1 |
O17 |
C13 |
N12 |
293.2 |
0.0 |
C1 |
O17 |
C13 |
C14 |
112.9 |
179.7 |
O17 |
C1 |
C2 |
C6 |
180.4 |
179.7 |
C2 |
C1 |
O17 |
C13 |
257.3 |
90.0 |
C2 |
C1 |
C6 |
C5 |
0.8 |
359.5 |
C2 |
C1 |
C6 |
C6' |
180.4 |
179.7 |
C2' |
C2 |
C1 |
C3 |
180.6 |
180.0 |
C1 |
C2 |
C2' |
H2'1 |
89.7 |
90.0 |
C1 |
C2 |
C2' |
H2'2 |
209.7 |
210.0 |
C1 |
C2 |
C2' |
H2'3 |
329.7 |
330.1 |
C1 |
C2 |
C3 |
C4 |
0.5 |
359.9 |
C1 |
C2 |
C3 |
H3 |
180.5 |
180.0 |
O17 |
C1 |
C6 |
C2 |
179.5 |
180.3 |
C6 |
C1 |
O17 |
C13 |
77.8 |
269.8 |
C6 |
C1 |
C2 |
C2' |
180.0 |
180.2 |
C6 |
C1 |
C2 |
C3 |
359.4 |
0.3 |
C4 |
C5 |
C6 |
C1 |
359.2 |
0.5 |
C1 |
C6 |
C5 |
H5 |
179.2 |
180.2 |
C5 |
C6 |
C1 |
C6' |
180.4 |
179.8 |
C1 |
C6 |
C6' |
H6'1 |
90.2 |
90.1 |
C1 |
C6 |
C6' |
H6'2 |
210.2 |
210.0 |
C1 |
C6 |
C6' |
H6'3 |
330.2 |
330.0 |
C13 |
O17 |
C1 |
C2 |
257.3 |
90.0 |
C13 |
O17 |
C1 |
C6 |
77.8 |
269.8 |
N12 |
C13 |
O17 |
C14 |
180.3 |
180.3 |
O17 |
C13 |
N12 |
C11 |
179.6 |
180.0 |
O17 |
C13 |
C14 |
C15 |
179.9 |
179.8 |
O17 |
C13 |
C14 |
BR |
359.5 |
0.0 |
C2' |
C2 |
C1 |
C6 |
180.0 |
180.2 |
C1 |
C2 |
C2' |
C3 |
179.4 |
180.0 |
C2' |
C2 |
C3 |
C4 |
180.0 |
180.0 |
C2' |
C2 |
C3 |
H3 |
360.0 |
0.0 |
H2'1 |
C2' |
C2 |
H2'2 |
240.0 |
240.1 |
H2'1 |
C2' |
C2 |
H2'3 |
120.0 |
120.0 |
H2'2 |
C2' |
C2 |
H2'3 |
240.0 |
239.9 |
C3 |
C2 |
C1 |
C6 |
359.4 |
0.3 |
C1 |
C2 |
C3 |
C2' |
180.5 |
180.0 |
C3 |
C2 |
C2' |
H2'1 |
270.2 |
270.0 |
C3 |
C2 |
C2' |
H2'2 |
30.2 |
29.9 |
C3 |
C2 |
C2' |
H2'3 |
150.3 |
150.0 |
C4 |
C3 |
C2 |
H3 |
180.0 |
179.9 |
C2 |
C3 |
C4 |
C5 |
359.5 |
0.1 |
C2 |
C3 |
C4 |
C4' |
180.1 |
180.0 |
H2'1 |
C2' |
C2 |
C3 |
270.2 |
270.0 |
C2 |
C2' |
H2'1 |
H2'2 |
120.0 |
119.9 |
C2 |
C2' |
H2'1 |
H2'3 |
240.0 |
240.1 |
H2'2 |
C2' |
H2'1 |
H2'3 |
120.0 |
120.1 |
H2'2 |
C2' |
C2 |
C3 |
30.2 |
29.9 |
C2 |
C2' |
H2'2 |
H2'1 |
240.0 |
240.1 |
C2 |
C2' |
H2'2 |
H2'3 |
120.0 |
120.0 |
H2'1 |
C2' |
H2'2 |
H2'3 |
240.0 |
239.9 |
H2'3 |
C2' |
C2 |
C3 |
150.3 |
150.0 |
C2 |
C2' |
H2'3 |
H2'1 |
120.0 |
119.9 |
C2 |
C2' |
H2'3 |
H2'2 |
240.0 |
240.0 |
H2'1 |
C2' |
H2'3 |
H2'2 |
120.0 |
120.0 |
C2 |
C3 |
C4 |
H3 |
180.0 |
180.1 |
C5 |
C4 |
C3 |
C4' |
179.4 |
180.1 |
C3 |
C4 |
C5 |
C6 |
0.6 |
359.7 |
C3 |
C4 |
C5 |
H5 |
180.6 |
180.0 |
C3 |
C4 |
C4' |
N4' |
135.8 |
36.5 |
C2 |
C3 |
H3 |
C4 |
180.0 |
179.9 |
H3 |
C3 |
C4 |
C5 |
179.5 |
180.0 |
H3 |
C3 |
C4 |
C4' |
0.1 |
359.9 |
C1 |
C6 |
C5 |
C4 |
359.2 |
0.5 |
C5 |
C4 |
C3 |
H3 |
179.5 |
180.0 |
C3 |
C4 |
C5 |
C4' |
180.6 |
179.9 |
C5 |
C4 |
C4' |
N4' |
316.4 |
216.3 |
C6 |
C5 |
C4 |
H5 |
180.0 |
179.7 |
C4 |
C5 |
C6 |
C6' |
179.6 |
180.3 |
C4' |
C4 |
C3 |
H3 |
0.1 |
359.9 |
C3 |
C4 |
C4' |
C5 |
179.4 |
180.1 |
C4' |
C4 |
C5 |
C6 |
180.0 |
179.8 |
C4' |
C4 |
C5 |
H5 |
0.0 |
0.1 |
C1 |
C6 |
C5 |
C6' |
179.6 |
180.2 |
C6 |
C5 |
C4 |
C4' |
180.0 |
179.8 |
C4 |
C5 |
C6 |
H5 |
180.0 |
180.3 |
C5 |
C6 |
C6' |
H6'1 |
269.8 |
270.2 |
C5 |
C6 |
C6' |
H6'2 |
29.8 |
30.2 |
C5 |
C6 |
C6' |
H6'3 |
149.9 |
150.2 |
H5 |
C5 |
C4 |
C4' |
0.0 |
0.1 |
C4 |
C5 |
H5 |
C6 |
180.0 |
179.7 |
H5 |
C5 |
C6 |
C6' |
359.6 |
0.0 |
C1 |
C6 |
C6' |
C5 |
180.4 |
179.8 |
C6' |
C6 |
C5 |
H5 |
359.6 |
0.0 |
H6'1 |
C6' |
C6 |
H6'2 |
240.0 |
240.1 |
H6'1 |
C6' |
C6 |
H6'3 |
120.0 |
120.0 |
H6'2 |
C6' |
C6 |
H6'3 |
240.0 |
240.0 |
C6 |
C6' |
H6'1 |
H6'2 |
120.0 |
120.0 |
C6 |
C6' |
H6'1 |
H6'3 |
240.0 |
239.9 |
H6'2 |
C6' |
H6'1 |
H6'3 |
120.0 |
120.0 |
C6 |
C6' |
H6'2 |
H6'1 |
240.0 |
240.0 |
C6 |
C6' |
H6'2 |
H6'3 |
120.0 |
120.0 |
H6'1 |
C6' |
H6'2 |
H6'3 |
240.1 |
240.0 |
C6 |
C6' |
H6'3 |
H6'1 |
120.0 |
120.0 |
C6 |
C6' |
H6'3 |
H6'2 |
240.0 |
240.0 |
H6'1 |
C6' |
H6'3 |
H6'2 |
120.0 |
120.0 |
O17 |
C13 |
N12 |
C14 |
179.7 |
179.7 |
N12 |
C13 |
C14 |
C15 |
359.6 |
359.5 |
N12 |
C13 |
C14 |
BR |
179.2 |
179.7 |
C13 |
N12 |
C11 |
N5 |
180.3 |
180.0 |
C13 |
N12 |
C11 |
N16 |
0.6 |
359.9 |
O17 |
C13 |
C14 |
N12 |
180.3 |
180.3 |
C14 |
C13 |
N12 |
C11 |
359.9 |
0.3 |
N16 |
C15 |
C14 |
C13 |
0.5 |
0.4 |
N18 |
C15 |
C14 |
C13 |
180.7 |
180.3 |
C15 |
C14 |
C13 |
BR |
180.4 |
179.8 |
C11 |
N12 |
C13 |
C14 |
359.9 |
0.3 |
N5 |
C11 |
N12 |
N16 |
179.6 |
180.1 |
N12 |
C11 |
N5 |
C21 |
345.3 |
174.4 |
N12 |
C11 |
N5 |
HN5 |
165.2 |
354.4 |
N12 |
C11 |
N16 |
C15 |
359.4 |
0.0 |
N12 |
C11 |
N5 |
N16 |
180.4 |
179.9 |
N5 |
C11 |
N16 |
C15 |
179.8 |
179.9 |
C21 |
N5 |
C11 |
HN5 |
180.0 |
180.0 |
C11 |
N5 |
C21 |
C22 |
85.4 |
146.2 |
C11 |
N5 |
C21 |
C26 |
265.2 |
326.0 |
N12 |
C11 |
N16 |
N5 |
179.7 |
180.1 |
N16 |
C11 |
N5 |
C21 |
164.9 |
354.5 |
N16 |
C11 |
N5 |
HN5 |
344.9 |
174.5 |
C11 |
N16 |
C15 |
N18 |
179.8 |
180.0 |
C11 |
N16 |
C15 |
C14 |
0.0 |
359.8 |
C21 |
N5 |
C11 |
N16 |
164.9 |
354.5 |
C11 |
N5 |
C21 |
HN5 |
180.0 |
180.0 |
C22 |
C21 |
N5 |
C26 |
180.2 |
180.2 |
N5 |
C21 |
C22 |
C23 |
180.2 |
180.1 |
N5 |
C21 |
C22 |
H22 |
0.2 |
360.0 |
N5 |
C21 |
C26 |
C25 |
179.8 |
179.7 |
N5 |
C21 |
C26 |
H26 |
359.8 |
360.0 |
HN5 |
N5 |
C11 |
N16 |
344.9 |
174.5 |
C11 |
N5 |
HN5 |
C21 |
180.0 |
180.0 |
HN5 |
N5 |
C21 |
C22 |
265.5 |
326.2 |
HN5 |
N5 |
C21 |
C26 |
85.2 |
146.0 |
C13 |
C14 |
C15 |
N16 |
0.5 |
0.4 |
N18 |
C15 |
N16 |
C14 |
179.8 |
180.2 |
N16 |
C15 |
N18 |
H181 |
360.0 |
0.2 |
N16 |
C15 |
N18 |
H182 |
120.0 |
180.0 |
N16 |
C15 |
C14 |
BR |
180.9 |
180.2 |
C13 |
C14 |
C15 |
N18 |
180.7 |
180.3 |
N16 |
C15 |
N18 |
C14 |
180.2 |
179.8 |
N18 |
C15 |
C14 |
BR |
1.1 |
0.1 |
H181 |
N18 |
C15 |
H182 |
240.0 |
180.1 |
C13 |
C14 |
C15 |
BR |
179.6 |
180.2 |
N16 |
C15 |
C14 |
N18 |
179.8 |
180.2 |
C14 |
C15 |
N18 |
H181 |
179.7 |
180.3 |
C14 |
C15 |
N18 |
H182 |
299.8 |
0.2 |
H181 |
N18 |
C15 |
C14 |
179.7 |
180.3 |
C15 |
N18 |
H181 |
H182 |
120.0 |
179.9 |
H182 |
N18 |
C15 |
C14 |
299.8 |
0.2 |
C15 |
N18 |
H182 |
H181 |
240.0 |
180.1 |
C13 |
C14 |
BR |
C15 |
180.4 |
179.8 |
C22 |
C21 |
N5 |
HN5 |
265.5 |
326.2 |
N5 |
C21 |
C22 |
C26 |
179.8 |
179.8 |
C22 |
C21 |
C26 |
C25 |
359.6 |
359.5 |
C22 |
C21 |
C26 |
H26 |
179.6 |
179.7 |
C23 |
C22 |
C21 |
H22 |
180.0 |
180.1 |
C21 |
C22 |
C23 |
C24 |
359.8 |
359.9 |
C21 |
C22 |
C23 |
H23 |
179.8 |
180.0 |
C26 |
C21 |
N5 |
HN5 |
85.2 |
146.0 |
N5 |
C21 |
C26 |
C22 |
180.2 |
180.2 |
C26 |
C21 |
C22 |
C23 |
0.4 |
0.3 |
C26 |
C21 |
C22 |
H22 |
180.5 |
180.2 |
C24 |
C25 |
C26 |
C21 |
0.2 |
0.4 |
C21 |
C26 |
C25 |
H25 |
180.2 |
180.2 |
C25 |
C26 |
C21 |
H26 |
180.0 |
179.8 |
C23 |
C22 |
C21 |
C26 |
0.4 |
0.3 |
C21 |
C22 |
C23 |
H22 |
180.0 |
179.9 |
C24 |
C23 |
C22 |
H23 |
180.0 |
179.9 |
C22 |
C23 |
C24 |
C25 |
0.0 |
0.0 |
C22 |
C23 |
C24 |
C27 |
179.8 |
180.0 |
H22 |
C22 |
C21 |
C26 |
180.5 |
180.2 |
C21 |
C22 |
H22 |
C23 |
180.0 |
180.1 |
H22 |
C22 |
C23 |
C24 |
179.7 |
180.0 |
H22 |
C22 |
C23 |
H23 |
359.8 |
0.1 |
C24 |
C23 |
C22 |
H22 |
179.7 |
180.0 |
C22 |
C23 |
C24 |
H23 |
180.0 |
180.1 |
C25 |
C24 |
C23 |
C27 |
180.2 |
180.0 |
C23 |
C24 |
C25 |
C26 |
0.0 |
359.8 |
C23 |
C24 |
C25 |
H25 |
180.0 |
180.0 |
C23 |
C24 |
C27 |
N27 |
206.6 |
213.8 |
H23 |
C23 |
C22 |
H22 |
359.8 |
0.1 |
C22 |
C23 |
H23 |
C24 |
180.0 |
179.9 |
H23 |
C23 |
C24 |
C25 |
180.0 |
180.0 |
H23 |
C23 |
C24 |
C27 |
359.8 |
360.0 |
C21 |
C26 |
C25 |
C24 |
0.2 |
0.4 |
C25 |
C24 |
C23 |
H23 |
180.0 |
180.0 |
C23 |
C24 |
C25 |
C27 |
179.8 |
180.0 |
C25 |
C24 |
C27 |
N27 |
26.4 |
33.8 |
C26 |
C25 |
C24 |
H25 |
180.0 |
179.8 |
C24 |
C25 |
C26 |
H26 |
180.2 |
180.2 |
C27 |
C24 |
C23 |
H23 |
359.8 |
360.0 |
C23 |
C24 |
C27 |
C25 |
180.2 |
180.0 |
C27 |
C24 |
C25 |
C26 |
180.2 |
179.8 |
C27 |
C24 |
C25 |
H25 |
0.2 |
360.0 |
C21 |
C26 |
C25 |
H26 |
180.0 |
180.2 |
C26 |
C25 |
C24 |
C27 |
180.2 |
179.8 |
C24 |
C25 |
C26 |
H25 |
180.0 |
180.2 |
H25 |
C25 |
C24 |
C27 |
0.2 |
360.0 |
C24 |
C25 |
H25 |
C26 |
180.0 |
179.8 |
H25 |
C25 |
C26 |
H26 |
0.2 |
0.0 |
C21 |
C26 |
H26 |
C25 |
180.0 |
179.8 |
H26 |
C26 |
C25 |
H25 |
0.2 |
0.0 |