PDB Chemical Component 656

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 656

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.413 1.401
C1 C6 1.409 1.390
C1 C7 1.417 1.478
C2 C3 1.395 1.365
C2 HC2 1.077 1.080
C3 C4 1.362 1.390
C3 HC3 1.080 1.080
C4 C5 1.337 1.408
C4 N3 1.281 1.379
C5 C6 1.399 1.395
C5 N4 1.319 1.356
C6 HC6 1.080 1.080
C7 N1 1.317 1.333
C7 N2 1.319 1.332
N1 HH11 1.011 0.970
N1 HH12 0.995 0.970
N2 HH21 1.010 0.971
N2 HH22 0.996 0.970
N3 C8 1.292 1.369
N3 HN3 0.992 0.971
N4 C8 1.321 1.310
C8 C1' 1.397 1.478
C1' C2' 1.392 1.396
C1' C6' 1.402 1.400
C2' C3' 1.391 1.379
C2' HC2' 1.081 1.080
C3' C4' 1.376 1.384
C3' HC3' 1.081 1.080
C4' C5' 1.389 1.386
C4' HC4' 1.080 1.080
C5' C6' 1.384 1.390
C5' O5' 1.382 1.360
C6' O6' 1.385 1.359
O5' C10 1.414 1.429
C10 C20 1.553 1.530
C10 H10A 1.079 1.090
C10 H10B 1.081 1.090
C20 C30 1.510 1.529
C20 C40 1.547 1.530
C20 H20 1.080 1.091
C30 H30A 1.080 1.090
C30 H30B 1.078 1.090
C30 H30C 1.083 1.090
C40 H40A 1.081 1.090
C40 H40B 1.081 1.090
C40 H40C 1.080 1.090

Bond Angles for 656

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 118.0 120.2
C2 C1 C7 119.8 119.9
C1 C2 C3 121.4 120.5
C1 C2 HC2 121.0 119.7
C6 C1 C7 122.2 119.9
C1 C6 C5 118.9 119.5
C1 C6 HC6 121.0 120.2
C1 C7 N1 121.0 120.0
C1 C7 N2 118.4 120.0
C3 C2 HC2 117.6 119.8
C2 C3 C4 117.7 120.2
C2 C3 HC3 121.7 119.9
C4 C3 HC3 120.6 119.9
C3 C4 C5 123.3 120.1
C3 C4 N3 131.0 133.7
C5 C4 N3 105.7 106.2
C4 C5 C6 120.8 119.5
C4 C5 N4 112.5 107.2
C4 N3 C8 107.5 107.3
C4 N3 HN3 130.0 126.4
C6 C5 N4 126.8 133.3
C5 C6 HC6 120.1 120.3
C5 N4 C8 100.6 109.6
N1 C7 N2 120.6 120.0
C7 N1 HH11 118.7 120.0
C7 N1 HH12 125.7 120.0
C7 N2 HH21 120.2 120.0
C7 N2 HH22 123.4 120.0
HH11 N1 HH12 115.6 120.0
HH21 N2 HH22 116.4 120.0
C8 N3 HN3 122.6 126.3
N3 C8 N4 113.8 109.8
N3 C8 C1' 121.6 125.1
N4 C8 C1' 124.7 125.1
C8 C1' C2' 120.1 120.2
C8 C1' C6' 121.1 120.1
C2' C1' C6' 118.9 119.7
C1' C2' C3' 120.5 120.0
C1' C2' HC2' 119.8 119.9
C1' C6' C5' 120.3 119.7
C1' C6' O6' 121.5 120.2
C3' C2' HC2' 119.7 120.1
C2' C3' C4' 120.0 120.3
C2' C3' HC3' 120.0 119.8
C4' C3' HC3' 119.9 119.9
C3' C4' C5' 120.2 120.3
C3' C4' HC4' 119.3 119.9
C5' C4' HC4' 120.5 119.8
C4' C5' C6' 120.1 120.0
C4' C5' O5' 122.1 120.0
C6' C5' O5' 117.8 120.0
C5' C6' O6' 118.2 120.2
C5' O5' C10 126.7 106.8
O5' C10 C20 106.9 109.5
O5' C10 H10A 108.0 109.5
O5' C10 H10B 108.3 109.4
C20 C10 H10A 112.5 109.5
C20 C10 H10B 111.6 109.4
C10 C20 C30 107.4 109.5
C10 C20 C40 109.1 109.4
C10 C20 H20 112.3 109.4
H10A C10 H10B 109.3 109.5
C30 C20 C40 106.3 109.5
C30 C20 H20 110.6 109.5
C20 C30 H30A 110.8 109.5
C20 C30 H30B 109.8 109.5
C20 C30 H30C 109.2 109.5
C40 C20 H20 111.0 109.5
C20 C40 H40A 110.1 109.5
C20 C40 H40B 111.2 109.5
C20 C40 H40C 110.5 109.4
H30A C30 H30B 109.7 109.5
H30A C30 H30C 108.7 109.5
H30B C30 H30C 108.6 109.4
H40A C40 H40B 108.9 109.5
H40A C40 H40C 108.0 109.5
H40B C40 H40C 108.1 109.5

Torsion Angles for 656

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 180.0 180.0
C2 C1 C6 C5 0.3 360.0
C2 C1 C6 HC6 180.1 179.9
C2 C1 C7 N1 172.8 359.9
C2 C1 C7 N2 352.1 180.0
C3 C2 C1 HC2 180.1 180.0
C1 C2 C3 C4 0.1 360.0
C1 C2 C3 HC3 180.1 180.1
C2 C1 C6 C7 180.0 180.0
C6 C1 C2 C3 359.7 0.0
C6 C1 C2 HC2 179.6 180.0
C6 C1 C7 N1 352.8 179.9
C6 C1 C7 N2 172.1 360.0
C4 C5 C6 C1 359.8 0.1
C1 C6 C5 N4 180.0 180.3
C5 C6 C1 HC6 180.2 180.0
C2 C1 C7 C6 180.0 180.0
C7 C1 C2 C3 179.7 180.0
C7 C1 C2 HC2 359.6 360.0
C7 C1 C6 C5 180.3 180.0
C7 C1 C6 HC6 0.1 360.0
N1 C7 C1 N2 180.7 180.0
C1 C7 N1 HH11 359.5 0.1
C1 C7 N1 HH12 178.4 180.0
C1 C7 N2 HH21 357.7 180.0
C1 C7 N2 HH22 176.5 0.0
C3 C2 C1 C6 359.7 0.0
C3 C2 C1 C7 179.7 180.0
C1 C2 C3 HC2 179.9 180.0
C4 C3 C2 HC3 180.0 179.9
C2 C3 C4 C5 360.0 0.1
C2 C3 C4 N3 179.8 180.0
HC2 C2 C1 C6 179.6 180.0
HC2 C2 C1 C7 359.6 360.0
C1 C2 HC2 C3 180.1 180.0
HC2 C2 C3 C4 180.2 180.0
HC2 C2 C3 HC3 0.2 0.1
C4 C3 C2 HC2 180.2 180.0
C2 C3 C4 HC3 180.0 180.1
C5 C4 C3 N3 180.2 180.1
C3 C4 C5 C6 0.1 359.9
C3 C4 C5 N4 179.9 179.7
C3 C4 N3 C8 180.2 180.1
C3 C4 N3 HN3 0.5 0.1
HC3 C3 C2 HC2 0.2 0.1
C2 C3 HC3 C4 180.0 179.9
HC3 C3 C4 C5 180.0 180.0
HC3 C3 C4 N3 359.8 359.9
C1 C6 C5 C4 359.8 0.1
C5 C4 C3 HC3 180.0 180.0
C3 C4 C5 N3 179.9 179.9
C5 C4 N3 C8 0.0 360.0
C5 C4 N3 HN3 180.4 180.0
C6 C5 C4 N4 180.2 180.2
C4 C5 C6 HC6 180.0 180.1
C4 C5 N4 C8 360.0 0.4
N3 C4 C3 HC3 359.8 359.9
C3 C4 N3 C5 180.2 180.1
N3 C4 C5 C6 180.2 180.0
N3 C4 C5 N4 360.0 359.8
C8 N3 C4 HN3 179.6 180.0
C4 N3 C8 N4 360.0 0.2
C4 N3 C8 C1' 179.0 180.0
C5 C6 C1 C7 180.3 180.0
C1 C6 C5 HC6 179.8 180.0
C6 C5 C4 N3 180.2 180.0
C4 C5 C6 N4 179.8 179.8
C6 C5 N4 C8 179.8 180.2
N4 C5 C4 N3 360.0 359.8
C4 C5 N4 C6 180.2 180.2
N4 C5 C6 HC6 0.2 0.3
N3 C8 N4 C5 0.0 359.6
C5 N4 C8 C1' 181.0 179.8
HC6 C6 C1 C7 0.1 360.0
C1 C6 HC6 C5 180.2 180.0
HC6 C6 C5 N4 0.2 0.3
C1 C7 N1 N2 179.2 180.0
N1 C7 N2 HH21 176.9 0.0
N1 C7 N2 HH22 355.8 180.1
HH11 N1 C7 HH12 181.1 180.1
C1 C7 N2 N1 180.7 180.0
N2 C7 N1 HH11 180.3 180.0
N2 C7 N1 HH12 359.1 359.9
HH21 N2 C7 HH22 181.2 179.9
HH11 N1 C7 N2 180.3 180.0
C7 N1 HH11 HH12 179.0 179.9
HH12 N1 C7 N2 359.1 359.9
C7 N1 HH12 HH11 181.1 180.1
C7 N2 HH21 HH22 178.9 180.1
C7 N2 HH22 HH21 181.1 179.9
C4 N3 C8 HN3 180.3 180.0
C5 N4 C8 N3 0.0 359.6
N4 C8 N3 C1' 180.9 180.2
N3 C8 C1' C2' 186.1 40.0
N3 C8 C1' C6' 5.4 220.2
C4 N3 HN3 C8 179.6 180.0
HN3 N3 C8 N4 179.6 180.2
HN3 N3 C8 C1' 358.7 0.0
N4 C8 N3 HN3 179.6 180.2
N3 C8 N4 C1' 179.0 179.8
N4 C8 C1' C2' 5.1 219.8
N4 C8 C1' C6' 184.3 40.0
C1' C8 N3 HN3 358.7 0.0
N3 C8 C1' N4 181.1 180.2
C2' C1' C8 C6' 180.7 179.8
C8 C1' C2' C3' 179.3 180.0
C8 C1' C2' HC2' 359.2 360.0
C8 C1' C6' C5' 180.9 180.3
C8 C1' C6' O6' 1.6 359.8
C8 C1' C2' C6' 179.3 180.2
C2' C1' C6' C5' 0.2 0.5
C2' C1' C6' O6' 180.9 180.0
C3' C2' C1' HC2' 180.1 180.0
C1' C2' C3' C4' 359.9 359.9
C1' C2' C3' HC3' 179.9 180.0
C8 C1' C6' C2' 180.7 179.8
C6' C1' C2' C3' 360.0 359.8
C6' C1' C2' HC2' 179.9 179.8
C4' C5' C6' C1' 359.7 359.5
C1' C6' C5' O5' 178.5 179.7
C5' C6' C1' O6' 179.3 180.5
C3' C2' C1' C6' 360.0 359.8
C1' C2' C3' HC2' 179.9 180.0
C4' C3' C2' HC3' 180.0 179.9
C2' C3' C4' C5' 360.0 0.0
C2' C3' C4' HC4' 180.0 180.0
HC2' C2' C1' C6' 179.9 179.8
C1' C2' HC2' C3' 180.1 180.0
HC2' C2' C3' C4' 180.0 180.0
HC2' C2' C3' HC3' 360.0 0.0
C4' C3' C2' HC2' 180.0 180.0
C2' C3' C4' HC3' 180.0 180.1
C5' C4' C3' HC4' 180.0 180.0
C3' C4' C5' C6' 0.2 0.3
C3' C4' C5' O5' 181.4 180.0
HC3' C3' C2' HC2' 360.0 0.0
C2' C3' HC3' C4' 180.0 179.9
HC3' C3' C4' C5' 180.0 180.0
HC3' C3' C4' HC4' 0.1 359.9
C1' C6' C5' C4' 359.7 359.5
C5' C4' C3' HC3' 180.0 180.0
C3' C4' C5' HC4' 180.0 180.0
C6' C5' C4' O5' 178.8 180.2
C4' C5' C6' O6' 179.0 180.0
C4' C5' O5' C10 359.5 360.0
HC4' C4' C3' HC3' 0.1 359.9
C3' C4' HC4' C5' 180.0 180.0
HC4' C4' C5' C6' 180.2 180.3
HC4' C4' C5' O5' 1.4 0.0
C1' C6' C5' O6' 180.7 179.5
C6' C5' C4' HC4' 180.2 180.3
C4' C5' C6' O5' 181.2 179.8
C6' C5' O5' C10 180.7 179.8
O5' C5' C4' HC4' 1.4 0.0
C4' C5' O5' C6' 178.8 180.2
O5' C5' C6' O6' 357.8 0.2
C5' O5' C10 C20 170.9 180.0
C5' O5' C10 H10A 292.2 60.0
C5' O5' C10 H10B 50.5 300.0
C1' C6' O6' C5' 179.3 180.5
O6' C6' C5' O5' 357.8 0.2
C20 C10 O5' H10A 238.7 120.1
C20 C10 O5' H10B 120.4 240.1
O5' C10 C20 C30 113.1 65.0
O5' C10 C20 C40 227.8 185.0
O5' C10 C20 H20 351.3 305.0
H10A C10 O5' H10B 241.7 120.0
O5' C10 C20 H10A 118.4 240.0
O5' C10 C20 H10B 241.7 119.9
H10A C10 C20 H10B 123.3 239.9
C30 C20 C10 C40 245.2 240.0
C30 C20 C10 H20 121.8 120.0
C10 C20 C30 H30A 181.0 60.0
C10 C20 C30 H30B 302.3 180.0
C10 C20 C30 H30C 61.3 300.0
C40 C20 C10 H20 236.6 240.0
C10 C20 C40 H40A 75.0 299.9
C10 C20 C40 H40B 195.8 60.0
C10 C20 C40 H40C 315.8 180.0
O5' C10 H10A C20 242.3 120.0
O5' C10 H10A H10B 117.7 240.1
C20 C10 H10A H10B 235.4 120.0
H10A C10 C20 C30 354.7 185.0
H10A C10 C20 C40 109.5 305.0
H10A C10 C20 H20 232.9 65.0
O5' C10 H10B C20 117.4 240.1
O5' C10 H10B H10A 242.5 120.0
C20 C10 H10B H10A 125.1 239.9
H10B C10 C20 C30 231.3 305.1
H10B C10 C20 C40 346.1 65.1
H10B C10 C20 H20 109.6 185.1
C30 C20 C10 H10A 354.7 185.0
C30 C20 C10 H10B 231.3 305.1
C10 C20 C30 C40 116.6 120.0
C10 C20 C30 H20 237.2 240.1
C40 C20 C30 H20 120.5 120.1
C30 C20 C40 H40A 190.6 59.9
C30 C20 C40 H40B 311.3 180.0
C30 C20 C40 H40C 71.3 300.0
H30A C30 C20 H30B 238.6 240.0
H30A C30 C20 H30C 119.7 120.0
H30B C30 C20 H30C 241.1 240.0
C40 C20 C10 H10A 109.5 305.0
C40 C20 C10 H10B 346.1 65.1
C10 C20 C40 C30 244.5 240.0
C10 C20 C40 H20 124.2 119.9
C30 C20 C40 H20 239.7 239.9
C40 C20 C30 H30A 64.3 300.0
C40 C20 C30 H30B 185.7 60.0
C40 C20 C30 H30C 304.6 180.0
H40A C40 C20 H40B 239.3 239.9
H40A C40 C20 H40C 119.2 119.9
H40B C40 C20 H40C 240.0 240.0
H20 C20 C10 H10A 232.9 65.0
H20 C20 C10 H10B 109.6 185.1
C10 C20 H20 C30 120.0 120.0
C10 C20 H20 C40 237.6 240.1
C30 C20 H20 C40 117.7 120.1
H20 C20 C30 H30A 303.8 179.9
H20 C20 C30 H30B 65.2 300.0
H20 C20 C30 H30C 184.1 59.9
H20 C20 C40 H40A 310.8 180.0
H20 C20 C40 H40B 71.6 300.1
H20 C20 C40 H40C 191.6 60.0
H30A C30 C20 C40 64.3 300.0
H30A C30 C20 H20 303.8 179.9
C20 C30 H30A H30B 121.4 120.0
C20 C30 H30A H30C 240.0 240.0
H30B C30 H30A H30C 118.6 120.0
H30B C30 C20 C40 185.7 60.0
H30B C30 C20 H20 65.2 300.0
C20 C30 H30B H30A 238.0 240.0
C20 C30 H30B H30C 119.3 120.0
H30A C30 H30B H30C 241.3 240.0
H30C C30 C20 C40 304.6 180.0
H30C C30 C20 H20 184.1 59.9
C20 C30 H30C H30A 121.0 120.0
C20 C30 H30C H30B 240.3 240.0
H30A C30 H30C H30B 119.3 120.0
H40A C40 C20 H20 310.8 180.0
C20 C40 H40A H40B 122.1 120.1
C20 C40 H40A H40C 239.2 240.1
H40B C40 H40A H40C 117.1 120.0
H40B C40 C20 H20 71.6 300.1
C20 C40 H40B H40A 238.6 240.0
C20 C40 H40B H40C 121.4 120.0
H40A C40 H40B H40C 242.9 240.0
H40C C40 C20 H20 191.6 60.0
C20 C40 H40C H40A 120.5 119.9
C20 C40 H40C H40B 238.2 240.0
H40A C40 H40C H40B 117.7 120.1