PDB Chemical Component 655

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 655

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.443 1.400
C1 C6 1.398 1.391
C1 C7 1.423 1.478
C2 C3 1.381 1.366
C2 HC2 1.087 1.080
C3 C4 1.362 1.390
C3 HC3 1.072 1.080
C4 C5 1.354 1.408
C4 N3 1.290 1.379
C5 C6 1.399 1.395
C5 N4 1.319 1.356
C6 HC6 1.079 1.080
C7 N1 1.311 1.332
C7 N2 1.330 1.332
N1 HH11 1.005 0.970
N1 HH12 0.984 0.970
N2 HH21 1.016 0.971
N2 HH22 0.996 0.969
N3 C8 1.314 1.369
N3 HN3 0.974 0.970
N4 C8 1.329 1.311
C8 C1' 1.385 1.477
C1' C2' 1.398 1.397
C1' C6' 1.383 1.399
C2' C3' 1.380 1.379
C2' HC2' 1.077 1.079
C3' C4' 1.390 1.385
C3' HC3' 1.084 1.081
C4' C5' 1.417 1.385
C4' HC4' 1.078 1.080
C5' O5' 1.378 1.360
C5' C6' 1.393 1.391
O5' C2B 1.422 1.429
C6' O6' 1.381 1.359
C1B C2B 1.492 1.539
C1B C5B 1.503 1.543
C1B H1A 1.073 1.090
C1B H1B 1.086 1.090
C2B C3B 1.505 1.542
C2B H2A 1.081 1.090
C3B C4B 1.526 1.549
C3B H3A 1.072 1.090
C3B H3B 1.076 1.090
C4B C5B 1.506 1.548
C4B H4A 1.091 1.090
C4B H4B 1.076 1.090
C5B H5A 1.074 1.090
C5B H5B 1.074 1.090

Bond Angles for 655

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 118.8 120.2
C2 C1 C7 119.2 119.9
C1 C2 C3 120.7 120.5
C1 C2 HC2 120.5 119.8
C6 C1 C7 122.0 119.9
C1 C6 C5 118.2 119.5
C1 C6 HC6 120.7 120.3
C1 C7 N1 119.3 120.0
C1 C7 N2 118.9 120.0
C3 C2 HC2 118.8 119.7
C2 C3 C4 118.1 120.1
C2 C3 HC3 121.1 119.9
C4 C3 HC3 120.7 119.9
C3 C4 C5 123.1 120.1
C3 C4 N3 130.2 133.7
C5 C4 N3 106.7 106.2
C4 C5 C6 121.0 119.5
C4 C5 N4 111.7 107.1
C4 N3 C8 106.5 107.3
C4 N3 HN3 122.7 126.3
C6 C5 N4 127.3 133.4
C5 C6 HC6 121.0 120.2
C5 N4 C8 101.5 109.6
N1 C7 N2 121.7 120.0
C7 N1 HH11 120.0 120.0
C7 N1 HH12 123.9 120.0
C7 N2 HH21 120.2 120.0
C7 N2 HH22 124.1 120.0
HH11 N1 HH12 116.0 120.0
HH21 N2 HH22 115.7 120.0
C8 N3 HN3 130.8 126.4
N3 C8 N4 113.6 109.7
N3 C8 C1' 124.6 125.1
N4 C8 C1' 121.8 125.1
C8 C1' C2' 120.2 120.1
C8 C1' C6' 120.2 120.2
C2' C1' C6' 119.6 119.7
C1' C2' C3' 121.7 120.0
C1' C2' HC2' 119.5 120.0
C1' C6' C5' 119.9 119.7
C1' C6' O6' 118.4 120.1
C3' C2' HC2' 118.8 120.0
C2' C3' C4' 118.8 120.3
C2' C3' HC3' 120.2 119.8
C4' C3' HC3' 121.0 119.8
C3' C4' C5' 120.3 120.3
C3' C4' HC4' 117.4 119.8
C5' C4' HC4' 122.3 119.9
C4' C5' O5' 123.6 120.0
C4' C5' C6' 119.7 120.0
O5' C5' C6' 116.7 120.0
C5' O5' C2B 121.7 106.8
C5' C6' O6' 121.7 120.1
O5' C2B C1B 100.3 110.0
O5' C2B C3B 108.8 110.1
O5' C2B H2A 114.4 110.0
C2B C1B C5B 105.8 106.6
C2B C1B H1A 109.5 110.0
C2B C1B H1B 110.9 110.0
C1B C2B C3B 106.8 106.6
C1B C2B H2A 113.1 110.0
C5B C1B H1A 107.8 110.0
C5B C1B H1B 112.9 110.0
C1B C5B C4B 104.5 104.2
C1B C5B H5A 108.5 110.4
C1B C5B H5B 108.9 110.5
H1A C1B H1B 109.7 110.1
C3B C2B H2A 112.6 110.1
C2B C3B C4B 104.4 104.2
C2B C3B H3A 108.2 110.5
C2B C3B H3B 110.0 110.5
C4B C3B H3A 106.1 110.5
C4B C3B H3B 117.2 110.5
C3B C4B C5B 101.0 102.7
C3B C4B H4A 112.3 110.7
C3B C4B H4B 113.3 110.8
H3A C3B H3B 110.3 110.5
C5B C4B H4A 108.6 110.8
C5B C4B H4B 112.3 110.8
C4B C5B H5A 113.4 110.5
C4B C5B H5B 110.7 110.5
H4A C4B H4B 109.2 110.8
H5A C5B H5B 110.5 110.6

Torsion Angles for 655

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 177.0 180.3
C2 C1 C6 C5 1.0 359.4
C2 C1 C6 HC6 180.4 179.7
C2 C1 C7 N1 159.4 180.0
C2 C1 C7 N2 339.7 0.0
C3 C2 C1 HC2 176.9 180.1
C1 C2 C3 C4 2.4 360.0
C1 C2 C3 HC3 179.7 179.9
C2 C1 C6 C7 183.1 179.7
C6 C1 C2 C3 357.5 0.3
C6 C1 C2 HC2 180.6 180.3
C6 C1 C7 N1 342.5 359.7
C6 C1 C7 N2 162.8 179.7
C4 C5 C6 C1 0.5 0.6
C1 C6 C5 N4 179.7 180.2
C5 C6 C1 HC6 180.6 179.7
C2 C1 C7 C6 176.9 180.3
C7 C1 C2 C3 180.5 180.0
C7 C1 C2 HC2 3.6 359.9
C7 C1 C6 C5 177.9 179.8
C7 C1 C6 HC6 357.4 0.0
N1 C7 C1 N2 179.7 180.0
C1 C7 N1 HH11 1.5 0.0
C1 C7 N1 HH12 177.2 180.0
C1 C7 N2 HH21 358.6 179.9
C1 C7 N2 HH22 177.4 359.7
C3 C2 C1 C6 357.5 0.3
C3 C2 C1 C7 180.5 180.0
C1 C2 C3 HC2 183.0 179.9
C4 C3 C2 HC3 182.7 180.0
C2 C3 C4 C5 359.1 0.0
C2 C3 C4 N3 177.7 180.0
HC2 C2 C1 C6 180.6 180.3
HC2 C2 C1 C7 3.6 359.9
C1 C2 HC2 C3 177.0 180.1
HC2 C2 C3 C4 179.4 180.0
HC2 C2 C3 HC3 356.7 0.0
C4 C3 C2 HC2 179.4 180.0
C2 C3 C4 HC3 177.3 180.0
C5 C4 C3 N3 181.4 180.1
C3 C4 C5 C6 359.4 359.7
C3 C4 C5 N4 180.1 180.0
C3 C4 N3 C8 179.8 180.0
C3 C4 N3 HN3 1.7 0.0
HC3 C3 C2 HC2 356.7 0.0
C2 C3 HC3 C4 182.7 180.0
HC3 C3 C4 C5 181.8 180.1
HC3 C3 C4 N3 0.3 360.0
C1 C6 C5 C4 0.5 0.6
C5 C4 C3 HC3 181.8 180.1
C3 C4 C5 N3 178.8 180.0
C5 C4 N3 C8 358.5 360.0
C5 C4 N3 HN3 180.4 180.0
C6 C5 C4 N4 179.3 179.7
C4 C5 C6 HC6 181.1 180.3
C4 C5 N4 C8 359.6 360.0
N3 C4 C3 HC3 0.3 360.0
C3 C4 N3 C5 181.3 180.1
N3 C4 C5 C6 180.6 179.7
N3 C4 C5 N4 1.2 0.0
C8 N3 C4 HN3 178.1 180.0
C4 N3 C8 N4 1.4 0.0
C4 N3 C8 C1' 180.0 180.0
C5 C6 C1 C7 177.9 179.8
C1 C6 C5 HC6 179.4 180.3
C6 C5 C4 N3 180.6 179.7
C4 C5 C6 N4 180.8 180.4
C6 C5 N4 C8 180.3 180.3
N4 C5 C4 N3 1.2 0.0
C4 C5 N4 C6 179.3 179.7
N4 C5 C6 HC6 0.3 359.9
N3 C8 N4 C5 359.4 360.0
C5 N4 C8 C1' 180.7 180.0
HC6 C6 C1 C7 357.4 0.0
C1 C6 HC6 C5 180.6 179.7
HC6 C6 C5 N4 0.3 359.9
C1 C7 N1 N2 180.3 180.0
N1 C7 N2 HH21 178.9 360.0
N1 C7 N2 HH22 357.7 179.8
HH11 N1 C7 HH12 184.3 180.1
C1 C7 N2 N1 179.7 180.0
N2 C7 N1 HH11 181.2 180.0
N2 C7 N1 HH12 356.9 359.9
HH21 N2 C7 HH22 181.2 180.2
HH11 N1 C7 N2 181.2 180.0
C7 N1 HH11 HH12 176.0 179.9
HH12 N1 C7 N2 356.9 359.9
C7 N1 HH12 HH11 184.2 180.1
C7 N2 HH21 HH22 178.9 179.8
C7 N2 HH22 HH21 181.1 180.2
C4 N3 C8 HN3 182.1 180.0
C5 N4 C8 N3 359.4 360.0
N4 C8 N3 C1' 181.3 180.0
N3 C8 C1' C2' 193.1 40.0
N3 C8 C1' C6' 13.5 219.7
C4 N3 HN3 C8 177.6 180.0
HN3 N3 C8 N4 179.3 180.0
HN3 N3 C8 C1' 357.9 360.0
N4 C8 N3 HN3 179.3 180.0
N3 C8 N4 C1' 178.7 180.0
N4 C8 C1' C2' 11.7 219.9
N4 C8 C1' C6' 192.1 39.7
C1' C8 N3 HN3 357.9 360.0
N3 C8 C1' N4 181.4 180.0
C2' C1' C8 C6' 179.6 180.2
C8 C1' C2' C3' 180.2 180.0
C8 C1' C2' HC2' 360.0 0.0
C8 C1' C6' C5' 179.8 179.8
C8 C1' C6' O6' 0.5 0.2
C8 C1' C2' C6' 180.4 179.8
C2' C1' C6' C5' 0.2 359.5
C2' C1' C6' O6' 180.9 180.0
C3' C2' C1' HC2' 180.2 180.0
C1' C2' C3' C4' 359.5 0.0
C1' C2' C3' HC3' 179.9 180.0
C8 C1' C6' C2' 179.6 180.2
C6' C1' C2' C3' 359.8 0.2
C6' C1' C2' HC2' 179.6 180.2
C4' C5' C6' C1' 0.5 0.5
O5' C5' C6' C1' 178.9 180.2
C5' C6' C1' O6' 179.3 179.5
C3' C2' C1' C6' 359.8 0.2
C1' C2' C3' HC2' 179.8 180.0
C4' C3' C2' HC3' 179.7 180.0
C2' C3' C4' C5' 1.1 360.0
C2' C3' C4' HC4' 180.7 180.0
HC2' C2' C1' C6' 179.6 180.2
C1' C2' HC2' C3' 180.2 180.0
HC2' C2' C3' C4' 179.8 180.0
HC2' C2' C3' HC3' 0.1 360.0
C4' C3' C2' HC2' 179.8 180.0
C2' C3' C4' HC3' 180.3 180.0
C5' C4' C3' HC4' 180.5 180.0
C3' C4' C5' O5' 180.5 180.0
C3' C4' C5' C6' 358.8 359.8
HC3' C3' C2' HC2' 0.1 360.0
C2' C3' HC3' C4' 179.7 180.0
HC3' C3' C4' C5' 180.8 180.0
HC3' C3' C4' HC4' 0.3 360.0
C1' C6' C5' C4' 0.5 0.5
C5' C4' C3' HC3' 180.8 180.0
C3' C4' C5' HC4' 179.5 180.0
O5' C5' C4' C6' 181.7 180.2
C4' C5' O5' C2B 354.7 6.6
C4' C5' C6' O6' 179.7 180.0
HC4' C4' C3' HC3' 0.3 360.0
C3' C4' HC4' C5' 180.5 180.0
HC4' C4' C5' O5' 1.0 0.0
HC4' C4' C5' C6' 179.4 179.8
C1' C6' C5' O5' 178.9 180.2
O5' C5' C4' HC4' 1.0 0.0
C4' C5' O5' C6' 178.4 179.8
O5' C5' C6' O6' 358.1 359.8
C5' O5' C2B C1B 220.0 158.3
C5' O5' C2B C3B 108.2 275.4
C5' O5' C2B H2A 341.4 36.9
C1' C6' C5' O6' 180.8 180.5
C6' C5' C4' HC4' 179.4 179.8
C4' C5' C6' O5' 181.6 180.2
C6' C5' O5' C2B 176.4 186.8
C2B O5' C5' C6' 176.4 186.8
O5' C2B C1B C5B 242.7 119.3
O5' C2B C1B H1A 358.7 238.6
O5' C2B C1B H1B 119.9 0.0
C1B C2B O5' C3B 111.8 242.8
C1B C2B O5' H2A 238.6 121.4
C3B C2B O5' H2A 126.8 238.5
O5' C2B C3B C4B 85.9 217.1
O5' C2B C3B H3A 198.6 335.8
O5' C2B C3B H3B 319.2 98.4
C1' C6' O6' C5' 179.3 179.5
O5' C2B C1B C3B 246.7 119.3
O5' C2B C1B H2A 122.3 238.6
C5B C1B C2B H1A 244.0 240.7
C5B C1B C2B H1B 122.8 119.3
C2B C1B C5B C4B 28.4 23.6
C2B C1B C5B H5A 149.7 142.3
C2B C1B C5B H5B 270.1 264.9
H1A C1B C2B H1B 238.8 238.6
C3B C2B C1B H2A 235.6 119.3
C1B C2B C3B C4B 338.5 336.4
C1B C2B C3B H3A 91.2 95.1
C1B C2B C3B H3B 211.8 217.7
C2B C1B C5B H1A 117.2 119.3
C2B C1B C5B H1B 238.5 240.7
C5B C1B C2B C3B 356.0 360.0
C5B C1B C2B H2A 120.4 240.7
H1A C1B C5B H1B 121.3 121.4
C3B C4B C5B C1B 319.1 322.1
C1B C5B C4B H4A 77.3 80.4
C1B C5B C4B H4B 198.1 203.7
C4B C5B C1B H5A 238.7 241.3
C4B C5B C1B H5B 118.4 118.7
H5A C5B C1B H5B 239.7 237.3
C2B C1B H1A C5B 245.3 242.8
C2B C1B H1A H1B 122.0 121.4
H1A C1B C2B C3B 112.0 119.3
H1A C1B C2B H2A 236.4 360.0
C5B C1B H1A H1B 236.7 238.6
H1A C1B C5B C4B 271.3 264.3
H1A C1B C5B H5A 32.5 23.0
H1A C1B C5B H5B 152.9 145.6
C2B C1B H1B C5B 118.6 117.2
C2B C1B H1B H1A 238.9 238.6
H1B C1B C2B C3B 233.2 240.7
H1B C1B C2B H2A 357.6 121.4
C5B C1B H1B H1A 120.3 121.4
H1B C1B C5B C4B 150.0 142.9
H1B C1B C5B H5A 271.2 261.6
H1B C1B C5B H5B 31.6 24.2
O5' C2B C3B C1B 107.4 240.7
O5' C2B C3B H2A 232.1 121.4
C3B C2B C1B C5B 356.0 360.0
C3B C2B C1B H1A 112.0 119.3
C3B C2B C1B H1B 233.2 240.7
C1B C2B C3B H2A 124.7 240.7
C4B C3B C2B H3A 247.3 241.3
C4B C3B C2B H3B 126.7 118.7
C2B C3B C4B C5B 38.2 37.9
C2B C3B C4B H4A 282.7 279.6
C2B C3B C4B H4B 158.5 156.3
H3A C3B C2B H3B 239.4 237.3
O5' C2B H2A C1B 246.0 121.4
O5' C2B H2A C3B 124.8 238.5
H2A C2B C1B C5B 120.4 240.7
H2A C2B C1B H1A 236.4 360.0
H2A C2B C1B H1B 357.6 121.4
C1B C2B H2A C3B 238.9 117.2
H2A C2B C3B C4B 213.8 95.7
H2A C2B C3B H3A 326.5 214.3
H2A C2B C3B H3B 87.1 337.0
C1B C5B C4B C3B 319.1 322.1
C4B C3B C2B H2A 213.8 95.7
C2B C3B C4B H3A 114.2 118.7
C2B C3B C4B H3B 238.0 241.3
H3A C3B C4B H3B 123.7 122.6
C5B C4B C3B H4A 115.5 118.3
C5B C4B C3B H4B 239.8 241.6
C3B C4B C5B H5A 201.1 203.5
C3B C4B C5B H5B 76.2 80.8
H4A C4B C3B H4B 124.2 123.3
H3A C3B C2B H2A 326.5 214.3
C2B C3B H3A C4B 248.4 245.2
C2B C3B H3A H3B 120.4 122.6
C4B C3B H3A H3B 232.0 237.4
H3A C3B C4B C5B 284.0 279.2
H3A C3B C4B H4A 168.5 160.9
H3A C3B C4B H4B 44.3 37.6
H3B C3B C2B H2A 87.1 337.0
C2B C3B H3B C4B 119.1 114.8
C2B C3B H3B H3A 240.7 237.4
C4B C3B H3B H3A 121.6 122.5
H3B C3B C4B C5B 160.3 156.6
H3B C3B C4B H4A 44.7 38.3
H3B C3B C4B H4B 280.5 275.0
C4B C5B C1B H1A 271.3 264.3
C4B C5B C1B H1B 150.0 142.9
C1B C5B C4B H5A 118.0 118.6
C1B C5B C4B H5B 242.9 241.3
C5B C4B C3B H3A 284.0 279.2
C5B C4B C3B H3B 160.3 156.6
C3B C4B C5B H4A 241.8 241.7
C3B C4B C5B H4B 120.9 118.3
H4A C4B C5B H4B 239.2 236.6
H5A C5B C4B H5B 124.9 122.7
H4A C4B C3B H3A 168.5 160.9
H4A C4B C3B H3B 44.7 38.3
C3B C4B H4A C5B 110.8 113.3
C3B C4B H4A H4B 233.5 236.7
C5B C4B H4A H4B 122.7 123.4
H4A C4B C5B H5A 319.3 321.7
H4A C4B C5B H5B 194.4 199.1
H4B C4B C3B H3A 44.3 37.6
H4B C4B C3B H3B 280.5 275.0
C3B C4B H4B C5B 246.4 246.7
C3B C4B H4B H4A 125.9 123.3
C5B C4B H4B H4A 239.5 236.6
H4B C4B C5B H5A 80.1 85.1
H4B C4B C5B H5B 315.2 322.4
H5A C5B C1B H1A 32.5 23.0
H5A C5B C1B H1B 271.2 261.6
C1B C5B H5A C4B 244.3 245.3
C1B C5B H5A H5B 119.3 122.6
H5A C5B C4B H4A 319.3 321.7
H5A C5B C4B H4B 80.1 85.1
C4B C5B H5A H5B 235.0 237.4
H5B C5B C1B H1A 152.9 145.6
H5B C5B C1B H1B 31.6 24.2
C1B C5B H5B C4B 114.4 114.8
C1B C5B H5B H5A 240.9 237.4
H5B C5B C4B H4A 194.4 199.1
H5B C5B C4B H4B 315.2 322.4
C4B C5B H5B H5A 126.5 122.6