PDB Chemical Component 653

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 653

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.440 1.400
C1 C6 1.426 1.391
C1 C7 1.419 1.479
C2 C3 1.391 1.365
C2 HC2 1.071 1.080
C3 C4 1.360 1.389
C3 HC3 1.076 1.080
C4 C5 1.351 1.408
C4 N3 1.290 1.379
C5 C6 1.401 1.395
C5 N4 1.321 1.356
C6 HC6 1.083 1.080
C7 N1 1.323 1.332
C7 N2 1.325 1.333
N1 HH11 1.014 0.970
N1 HH12 0.996 0.969
N2 HH21 1.011 0.970
N2 HH22 0.997 0.970
N3 C8 1.299 1.370
N3 HN3 0.983 0.970
N4 C8 1.331 1.310
C8 C1' 1.418 1.478
C1' C2' 1.416 1.396
C1' C6' 1.412 1.399
C2' C3' 1.396 1.380
C2' HC2' 1.082 1.080
C3' CV' 1.565 1.507
C3' C4' 1.390 1.382
CV' CW' 1.569 1.530
CV' H31A 1.091 1.090
CV' H31B 1.081 1.090
CW' NX' 1.517 1.469
CW' H32A 1.082 1.090
CW' H32B 1.084 1.090
NX' H33A 1.045 1.009
NX' H33B 1.044 1.009
NX' H33C 1.036 1.009
C4' C5' 1.398 1.393
C4' HC4' 1.082 1.080
C5' C6' 1.401 1.397
C5' C1B 1.402 1.483
C6' O6' 1.370 1.357
C1B C2B 1.408 1.393
C1B C6B 1.412 1.395
C2B C3B 1.405 1.380
C2B H2B 1.082 1.080
C3B C4B 1.391 1.384
C3B H3B 1.082 1.080
C4B C5B 1.397 1.383
C4B H4B 1.085 1.080
C5B C6B 1.405 1.380
C5B H5B 1.082 1.080
C6B H6B 1.082 1.079

Bond Angles for 653

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 116.9 120.2
C2 C1 C7 120.5 119.9
C1 C2 C3 123.6 120.5
C1 C2 HC2 119.9 119.7
C6 C1 C7 122.6 119.9
C1 C6 C5 117.1 119.5
C1 C6 HC6 122.0 120.2
C1 C7 N1 120.0 120.0
C1 C7 N2 118.5 120.0
C3 C2 HC2 116.6 119.8
C2 C3 C4 116.4 120.2
C2 C3 HC3 122.7 119.9
C4 C3 HC3 121.0 119.9
C3 C4 C5 123.0 120.1
C3 C4 N3 129.9 133.7
C5 C4 N3 107.1 106.2
C4 C5 C6 123.1 119.5
C4 C5 N4 111.9 107.2
C4 N3 C8 105.3 107.3
C4 N3 HN3 129.8 126.4
C6 C5 N4 125.0 133.3
C5 C6 HC6 121.0 120.3
C5 N4 C8 100.1 109.6
N1 C7 N2 121.5 120.0
C7 N1 HH11 117.6 120.0
C7 N1 HH12 126.7 120.0
C7 N2 HH21 120.1 120.0
C7 N2 HH22 123.4 119.9
HH11 N1 HH12 115.7 120.0
HH21 N2 HH22 116.4 120.0
C8 N3 HN3 124.8 126.3
N3 C8 N4 115.5 109.8
N3 C8 C1' 122.8 125.1
N4 C8 C1' 121.6 125.1
C8 C1' C2' 121.2 120.1
C8 C1' C6' 122.1 120.1
C2' C1' C6' 116.7 119.8
C1' C2' C3' 122.3 120.1
C1' C2' HC2' 119.2 119.9
C1' C6' C5' 122.5 119.6
C1' C6' O6' 119.8 120.2
C3' C2' HC2' 118.5 119.9
C2' C3' CV' 121.8 119.8
C2' C3' C4' 118.2 120.4
CV' C3' C4' 119.9 119.8
C3' CV' CW' 112.1 109.5
C3' CV' H31A 109.0 109.4
C3' CV' H31B 108.3 109.5
C3' C4' C5' 122.6 120.2
C3' C4' HC4' 118.8 119.9
CW' CV' H31A 110.6 109.5
CW' CV' H31B 110.9 109.5
CV' CW' NX' 109.2 109.5
CV' CW' H32A 111.1 109.5
CV' CW' H32B 109.5 109.5
H31A CV' H31B 105.6 109.5
NX' CW' H32A 110.6 109.5
NX' CW' H32B 109.8 109.5
CW' NX' H33A 112.7 109.5
CW' NX' H33B 112.2 109.4
CW' NX' H33C 108.4 109.5
H32A CW' H32B 106.5 109.5
H33A NX' H33B 107.6 109.5
H33A NX' H33C 107.8 109.4
H33B NX' H33C 107.9 109.5
C5' C4' HC4' 118.6 119.9
C4' C5' C6' 117.7 119.9
C4' C5' C1B 118.6 120.1
C6' C5' C1B 123.7 120.1
C5' C6' O6' 117.7 120.2
C5' C1B C2B 122.8 120.2
C5' C1B C6B 120.4 120.1
C2B C1B C6B 116.8 119.8
C1B C2B C3B 121.3 119.9
C1B C2B H2B 119.5 120.1
C1B C6B C5B 121.9 119.8
C1B C6B H6B 119.4 120.1
C3B C2B H2B 119.2 120.0
C2B C3B C4B 120.9 120.1
C2B C3B H3B 120.2 120.0
C4B C3B H3B 118.9 119.9
C3B C4B C5B 118.9 120.3
C3B C4B H4B 120.7 119.8
C5B C4B H4B 120.4 119.9
C4B C5B C6B 120.2 120.2
C4B C5B H5B 120.0 119.9
C6B C5B H5B 119.9 119.9
C5B C6B H6B 118.7 120.1

Torsion Angles for 653

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 179.7 180.3
C2 C1 C6 C5 359.6 359.4
C2 C1 C6 HC6 179.9 179.6
C2 C1 C7 N1 176.6 180.1
C2 C1 C7 N2 356.3 360.0
C3 C2 C1 HC2 180.9 180.1
C1 C2 C3 C4 0.3 360.0
C1 C2 C3 HC3 180.4 180.0
C2 C1 C6 C7 180.3 179.7
C6 C1 C2 C3 359.9 0.3
C6 C1 C2 HC2 179.0 180.2
C6 C1 C7 N1 357.0 359.8
C6 C1 C7 N2 176.7 179.7
C4 C5 C6 C1 0.8 0.5
C1 C6 C5 N4 180.6 180.2
C5 C6 C1 HC6 179.8 179.8
C2 C1 C7 C6 179.7 180.3
C7 C1 C2 C3 180.2 180.0
C7 C1 C2 HC2 359.3 360.0
C7 C1 C6 C5 179.3 179.7
C7 C1 C6 HC6 359.5 359.9
N1 C7 C1 N2 180.3 180.1
C1 C7 N1 HH11 358.5 180.1
C1 C7 N1 HH12 179.1 359.9
C1 C7 N2 HH21 358.9 0.0
C1 C7 N2 HH22 177.0 179.7
C3 C2 C1 C6 359.9 0.3
C3 C2 C1 C7 180.2 180.0
C1 C2 C3 HC2 179.2 179.9
C4 C3 C2 HC3 179.8 180.0
C2 C3 C4 C5 0.1 360.0
C2 C3 C4 N3 178.9 180.0
HC2 C2 C1 C6 179.0 180.2
HC2 C2 C1 C7 359.3 360.0
C1 C2 HC2 C3 180.8 180.1
HC2 C2 C3 C4 181.1 180.1
HC2 C2 C3 HC3 1.2 0.1
C4 C3 C2 HC2 181.1 180.1
C2 C3 C4 HC3 180.1 180.0
C5 C4 C3 N3 181.2 180.0
C3 C4 C5 C6 359.3 359.8
C3 C4 C5 N4 179.5 180.0
C3 C4 N3 C8 180.5 180.0
C3 C4 N3 HN3 2.7 360.0
HC3 C3 C2 HC2 1.2 0.1
C2 C3 HC3 C4 179.8 180.0
HC3 C3 C4 C5 180.0 180.0
HC3 C3 C4 N3 358.7 0.0
C1 C6 C5 C4 0.8 0.5
C5 C4 C3 HC3 180.0 180.0
C3 C4 C5 N3 179.0 180.0
C5 C4 N3 C8 359.4 360.0
C5 C4 N3 HN3 181.6 180.0
C6 C5 C4 N4 179.9 179.7
C4 C5 C6 HC6 180.5 180.4
C4 C5 N4 C8 359.8 0.0
N3 C4 C3 HC3 358.7 0.0
C3 C4 N3 C5 181.1 180.0
N3 C4 C5 C6 180.3 179.7
N3 C4 C5 N4 0.5 360.0
C8 N3 C4 HN3 177.9 180.0
C4 N3 C8 N4 0.5 0.0
C4 N3 C8 C1' 177.7 180.0
C5 C6 C1 C7 179.3 179.7
C1 C6 C5 HC6 180.2 180.2
C6 C5 C4 N3 180.3 179.7
C4 C5 C6 N4 180.2 180.4
C6 C5 N4 C8 180.0 180.3
N4 C5 C4 N3 0.5 360.0
C4 C5 N4 C6 179.9 179.7
N4 C5 C6 HC6 0.4 0.0
N3 C8 N4 C5 359.8 360.0
C5 N4 C8 C1' 182.6 180.0
HC6 C6 C1 C7 359.5 359.9
C1 C6 HC6 C5 179.8 179.8
HC6 C6 C5 N4 0.4 0.0
C1 C7 N1 N2 179.7 179.9
N1 C7 N2 HH21 178.6 179.9
N1 C7 N2 HH22 356.6 359.7
HH11 N1 C7 HH12 179.5 180.1
C1 C7 N2 N1 180.3 180.1
N2 C7 N1 HH11 178.9 0.1
N2 C7 N1 HH12 359.4 180.0
HH21 N2 C7 HH22 182.0 180.3
HH11 N1 C7 N2 178.9 0.1
C7 N1 HH11 HH12 180.5 179.9
HH12 N1 C7 N2 359.4 180.0
C7 N1 HH12 HH11 179.5 180.1
C7 N2 HH21 HH22 178.2 179.7
C7 N2 HH22 HH21 181.9 180.3
C4 N3 C8 HN3 182.0 180.0
C5 N4 C8 N3 359.8 360.0
N4 C8 N3 C1' 182.8 180.1
N3 C8 C1' C2' 183.8 140.3
N3 C8 C1' C6' 4.2 320.0
C4 N3 HN3 C8 177.5 180.0
HN3 N3 C8 N4 178.5 180.0
HN3 N3 C8 C1' 355.7 359.9
N4 C8 N3 HN3 178.5 180.0
N3 C8 N4 C1' 177.2 179.9
N4 C8 C1' C2' 0.9 320.2
N4 C8 C1' C6' 181.2 139.9
C1' C8 N3 HN3 355.7 359.9
N3 C8 C1' N4 183.0 180.1
C2' C1' C8 C6' 179.7 180.3
C8 C1' C2' C3' 180.1 180.0
C8 C1' C2' HC2' 360.0 360.0
C8 C1' C6' C5' 179.9 179.8
C8 C1' C6' O6' 359.6 0.2
C8 C1' C2' C6' 180.3 179.7
C2' C1' C6' C5' 0.2 359.6
C2' C1' C6' O6' 179.9 179.9
C3' C2' C1' HC2' 180.1 180.0
C1' C2' C3' CV' 181.2 180.0
C1' C2' C3' C4' 0.2 360.0
C8 C1' C6' C2' 179.7 180.3
C6' C1' C2' C3' 359.8 0.3
C6' C1' C2' HC2' 179.7 180.3
C4' C5' C6' C1' 359.8 0.4
C1' C6' C5' C1B 179.9 180.2
C5' C6' C1' O6' 180.3 179.6
C3' C2' C1' C6' 359.8 0.3
C1' C2' C3' HC2' 179.9 180.0
CV' C3' C2' C4' 180.9 180.0
C2' C3' CV' CW' 280.5 90.0
C2' C3' CV' H31A 157.7 210.0
C2' C3' CV' H31B 43.3 330.0
C2' C3' C4' C5' 359.8 360.0
C2' C3' C4' HC4' 179.9 180.0
HC2' C2' C1' C6' 179.7 180.3
C1' C2' HC2' C3' 180.1 180.0
HC2' C2' C3' CV' 1.3 360.0
HC2' C2' C3' C4' 180.3 180.0
CV' C3' C2' HC2' 1.3 360.0
C2' C3' CV' C4' 179.0 180.0
CV' C3' C4' C5' 178.9 180.0
CV' C3' C4' HC4' 358.9 360.0
CW' CV' C3' H31A 122.8 240.0
CW' CV' C3' H31B 237.2 120.0
C3' CV' CW' NX' 165.6 180.0
C3' CV' CW' H32A 43.3 300.0
C3' CV' CW' H32B 285.9 60.0
H31A CV' C3' H31B 114.5 240.0
C4' C3' C2' HC2' 180.3 180.0
C2' C3' C4' CV' 180.9 180.0
C4' C3' CV' CW' 101.5 270.0
C4' C3' CV' H31A 338.7 30.0
C4' C3' CV' H31B 224.2 150.0
C5' C4' C3' HC4' 179.9 180.0
C3' C4' C5' C6' 0.2 359.8
C3' C4' C5' C1B 180.1 180.0
CW' CV' C3' C4' 101.5 270.0
C3' CV' CW' H31A 238.1 119.9
C3' CV' CW' H31B 121.3 240.0
H31A CV' CW' H31B 243.2 120.0
NX' CW' CV' H32A 122.4 240.0
NX' CW' CV' H32B 239.7 120.0
CV' CW' NX' H33A 258.1 300.0
CV' CW' NX' H33B 136.4 60.0
CV' CW' NX' H33C 17.3 180.0
H32A CW' CV' H32B 117.4 240.0
H31A CV' C3' C4' 338.7 30.0
C3' CV' H31A CW' 123.7 240.0
C3' CV' H31A H31B 243.8 120.0
CW' CV' H31A H31B 120.1 240.0
H31A CV' CW' NX' 287.5 60.0
H31A CV' CW' H32A 165.1 180.0
H31A CV' CW' H32B 47.8 300.0
H31B CV' C3' C4' 224.2 150.0
C3' CV' H31B CW' 236.5 120.0
C3' CV' H31B H31A 116.7 240.0
CW' CV' H31B H31A 240.2 120.0
H31B CV' CW' NX' 44.3 300.0
H31B CV' CW' H32A 282.0 60.0
H31B CV' CW' H32B 164.6 180.0
NX' CW' CV' H31A 287.5 60.0
NX' CW' CV' H31B 44.3 300.0
CV' CW' NX' H32A 237.3 120.0
CV' CW' NX' H32B 120.1 240.0
H32A CW' NX' H32B 242.8 120.0
H33A NX' CW' H33B 121.7 240.0
H33A NX' CW' H33C 240.8 120.0
H33B NX' CW' H33C 119.1 240.0
H32A CW' CV' H31A 165.1 180.0
H32A CW' CV' H31B 282.0 60.0
CV' CW' H32A NX' 121.5 240.0
CV' CW' H32A H32B 240.8 120.0
NX' CW' H32A H32B 119.3 240.0
H32A CW' NX' H33A 20.8 180.0
H32A CW' NX' H33B 259.1 300.0
H32A CW' NX' H33C 140.0 60.0
H32B CW' CV' H31A 47.8 300.0
H32B CW' CV' H31B 164.6 180.0
CV' CW' H32B NX' 240.1 120.0
CV' CW' H32B H32A 120.3 240.0
NX' CW' H32B H32A 240.2 120.0
H32B CW' NX' H33A 138.0 60.0
H32B CW' NX' H33B 16.3 180.0
H32B CW' NX' H33C 257.3 300.0
H33A NX' CW' H32A 20.8 180.0
H33A NX' CW' H32B 138.0 60.0
CW' NX' H33A H33B 235.7 120.0
CW' NX' H33A H33C 119.6 240.0
H33B NX' H33A H33C 243.8 120.0
H33B NX' CW' H32A 259.1 300.0
H33B NX' CW' H32B 16.3 180.0
CW' NX' H33B H33A 124.6 239.9
CW' NX' H33B H33C 240.7 120.0
H33A NX' H33B H33C 116.1 240.1
H33C NX' CW' H32A 140.0 60.0
H33C NX' CW' H32B 257.3 300.0
CW' NX' H33C H33A 237.7 120.1
CW' NX' H33C H33B 121.7 240.0
H33A NX' H33C H33B 244.0 120.0
C1' C6' C5' C4' 359.8 0.4
C3' C4' C5' HC4' 180.1 180.0
C6' C5' C4' C1B 180.0 179.8
C4' C5' C6' O6' 180.1 180.0
C4' C5' C1B C2B 117.8 130.0
C4' C5' C1B C6B 298.9 309.8
C3' C4' HC4' C5' 179.9 180.0
HC4' C4' C5' C6' 180.1 179.8
HC4' C4' C5' C1B 0.0 0.0
C1' C6' C5' O6' 179.7 180.4
C6' C5' C4' HC4' 180.1 179.8
C4' C5' C6' C1B 179.9 180.2
C6' C5' C1B C2B 297.7 310.2
C6' C5' C1B C6B 118.9 130.0
C1B C5' C4' HC4' 0.0 0.0
C4' C5' C1B C6' 180.1 179.8
C1B C5' C6' O6' 0.2 359.8
C2B C1B C5' C6B 178.8 180.2
C5' C1B C2B C3B 181.5 180.0
C5' C1B C2B H2B 1.5 0.0
C5' C1B C6B C5B 178.4 179.7
C5' C1B C6B H6B 358.9 0.2
C1' C6' O6' C5' 180.3 179.6
O6' C6' C5' C1B 0.2 359.8
C5' C1B C2B C6B 181.1 179.8
C2B C1B C6B C5B 359.5 359.4
C2B C1B C6B H6B 180.0 180.0
C3B C2B C1B H2B 180.0 180.0
C1B C2B C3B C4B 359.8 0.0
C1B C2B C3B H3B 179.7 180.0
C5' C1B C6B C2B 178.9 180.2
C6B C1B C2B C3B 0.3 0.2
C6B C1B C2B H2B 180.4 180.2
C4B C5B C6B C1B 0.4 0.6
C1B C6B C5B H5B 180.2 180.3
C5B C6B C1B H6B 179.5 179.5
C3B C2B C1B C6B 0.3 0.2
C1B C2B C3B H2B 180.0 180.0
C4B C3B C2B H3B 180.1 180.0
C2B C3B C4B C5B 0.1 360.0
C2B C3B C4B H4B 179.8 180.0
H2B C2B C1B C6B 180.4 180.2
C1B C2B H2B C3B 180.0 180.0
H2B C2B C3B C4B 179.8 180.1
H2B C2B C3B H3B 359.7 0.0
C4B C3B C2B H2B 179.8 180.1
C2B C3B C4B H3B 179.9 180.0
C5B C4B C3B H4B 180.3 180.0
C3B C4B C5B C6B 359.8 359.7
C3B C4B C5B H5B 180.0 180.0
H3B C3B C2B H2B 359.7 0.0
C2B C3B H3B C4B 180.1 180.0
H3B C3B C4B C5B 180.2 180.0
H3B C3B C4B H4B 359.9 0.0
C1B C6B C5B C4B 0.4 0.6
C5B C4B C3B H3B 180.2 180.0
C3B C4B C5B H4B 179.7 180.0
C6B C5B C4B H5B 179.8 179.7
C4B C5B C6B H6B 180.0 180.1
H4B C4B C3B H3B 359.9 0.0
C3B C4B H4B C5B 180.3 180.0
H4B C4B C5B C6B 180.1 179.7
H4B C4B C5B H5B 0.3 360.0
C1B C6B C5B H6B 180.5 180.5
C6B C5B C4B H4B 180.1 179.7
C4B C5B C6B H5B 180.2 180.3
H5B C5B C4B H4B 0.3 360.0
C4B C5B H5B C6B 179.8 179.7
H5B C5B C6B H6B 359.8 359.7
C1B C6B H6B C5B 179.6 179.5
H6B C6B C5B H5B 359.8 359.7