PDB Chemical Component 64T

Ideal Model

Chemical Description

Name 5-HYDROXY-THYMIDINE-5'-MONOPHOSPHATE
Formula C10 H17 N2 O9 P
Formal charge 0
Molecular weight 340.224 g/mol
Component type DNA LINKING
Nonstandard Parent Id DT

Chemical features

Atom count 39
Chiral atom count 4
Chiral atoms C4' C3' C1' C5
Observed leaving atoms OP3 HO3'
Bond count 40
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-hydroxythymidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[(5R)-5-hydroxy-5-methyl-2,4-dioxo-1,3-diazinan-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) C[C@@]1(O)CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) C[C]1(O)CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C[C@]1(CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H17N2O9P/c1-10(16)4-12(9(15)11-8(10)14)7-2-5(13)6(21-7)3-20-22(17,18)19/h5-7,13,16H,2-4H2,1H3,(H,11,14,15)(H2,17,18,19)/t5-,6+,7+,10+/m0/s1
InChIKey descriptor KFLPOBSZNOOWQL-MPXCPUAZSA-N

Status Information

Last modified 2011-06-04
Created 2001-11-27
Release status REL
Model PDB code 1KEG
Processing site RCSB