PDB Chemical Component 64T

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 64T

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.483 1.501
P OP2 1.484 1.618
P O5' 1.590 1.619
P OP3   1.616
OP2 HOP2 0.950 0.981
O5' C5' 1.424 1.418
C5' C4' 1.508 1.523
C5' H5' 1.115 1.092
C5' H5'' 1.115 1.093
C4' O4' 1.450 1.441
C4' C3' 1.527 1.522
C4' H4' 1.114 1.094
O4' C1' 1.413 1.434
C3' O3' 1.421 1.426
C3' C2' 1.512 1.511
C3' H3' 1.116 1.094
O3' HO3' 0.950 0.974
C2' C1' 1.514 1.520
C2' H2' 1.116 1.097
C2' H2'' 1.114 1.095
C1' N1 1.521 1.434
C1' H1' 1.114 1.095
N1 C2 1.293 1.397
N1 C6 1.490 1.461
C2 O2 1.243 1.232
C2 N3 1.389 1.400
N3 C4 1.403 1.392
N3 H3 1.020 1.017
C4 O4 1.198 1.230
C4 C5 1.504 1.519
C5 C5M 1.526 1.527
C5 O5 1.425 1.425
C5 C6 1.556 1.523
C5M H71 1.115 1.094
C5M H72 1.116 1.094
C5M H73 1.114 1.094
O5 HO5 0.950 0.971
C6 H61 1.115 1.097
C6 H62 1.115 1.096
OP3 HOP3   0.981

Bond Angles for 64T

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 119.5 115.3
OP1 P O5' 107.6 115.0
OP1 P OP3   115.0
OP2 P O5' 108.9 103.7
OP2 P OP3   103.3
P OP2 HOP2 119.6 118.9
O5' P OP3   102.9
P O5' C5' 120.0 118.5
P OP3 HOP3   118.9
O5' C5' C4' 110.4 108.9
O5' C5' H5' 111.8 109.0
O5' C5' H5'' 111.8 108.9
C4' C5' H5' 111.9 110.3
C4' C5' H5'' 111.9 110.3
C5' C4' O4' 106.4 107.9
C5' C4' C3' 112.9 112.9
C5' C4' H4' 108.3 109.5
H5' C5' H5'' 98.6 109.3
O4' C4' C3' 106.4 106.2
O4' C4' H4' 114.6 107.9
C4' O4' C1' 111.2 109.3
C3' C4' H4' 108.3 112.2
C4' C3' O3' 117.0 109.9
C4' C3' C2' 105.1 103.1
C4' C3' H3' 107.1 113.5
O4' C1' C2' 107.2 107.4
O4' C1' N1 110.9 109.3
O4' C1' H1' 110.3 108.0
O3' C3' C2' 108.3 109.7
O3' C3' H3' 103.8 107.4
C3' O3' HO3' 116.9 107.3
C2' C3' H3' 115.9 113.2
C3' C2' C1' 107.2 102.5
C3' C2' H2' 113.0 109.7
C3' C2' H2'' 113.1 114.1
C1' C2' H2' 113.1 110.6
C1' C2' H2'' 113.1 111.7
C2' C1' N1 110.0 112.8
C2' C1' H1' 111.1 111.5
H2' C2' H2'' 97.4 108.3
N1 C1' H1' 107.4 107.8
C1' N1 C2 120.9 120.7
C1' N1 C6 112.9 117.2
C2 N1 C6 125.6 121.1
N1 C2 O2 123.4 124.4
N1 C2 N3 118.5 114.8
N1 C6 C5 111.5 111.9
N1 C6 H61 111.5 107.7
N1 C6 H62 111.5 106.9
O2 C2 N3 118.2 120.9
C2 N3 C4 124.4 128.1
C2 N3 H3 117.3 115.9
C4 N3 H3 118.3 116.0
N3 C4 O4 119.8 122.6
N3 C4 C5 117.4 114.3
O4 C4 C5 122.8 123.0
C4 C5 C5M 108.6 111.6
C4 C5 O5 109.3 106.5
C4 C5 C6 111.7 110.6
C5M C5 O5 110.0 108.6
C5M C5 C6 109.4 110.7
C5 C5M H71 108.6 110.6
C5 C5M H72 112.5 110.6
C5 C5M H73 112.5 110.6
O5 C5 C6 107.7 108.7
C5 O5 HO5 109.3 106.7
C5 C6 H61 111.4 110.1
C5 C6 H62 111.4 111.3
H71 C5M H72 112.5 108.3
H71 C5M H73 112.6 108.3
H72 C5M H73 97.9 108.4
H61 C6 H62 98.9 108.9

Torsion Angles for 64T

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 O5' 235.1 120.6
OP2 P OP1 OP3   239.9
OP1 P OP2 HOP2 180.0 48.8
O5' P OP1 OP3   119.3
OP1 P O5' C5' 68.2 179.9
OP1 P OP3 HOP3   312.0
OP1 P OP2 O5' 124.3 233.4
OP1 P OP2 OP3   126.3
O5' P OP2 OP3   252.9
OP2 P O5' C5' 199.2 53.2
OP2 P OP3 HOP3   78.5
OP1 P O5' OP2 229.0 126.8
OP1 P O5' OP3   234.2
OP2 P O5' OP3   107.4
O5' P OP2 HOP2 55.8 175.4
O5' P OP3 HOP3   186.2
P O5' C5' C4' 192.3 180.0
P O5' C5' H5' 317.6 300.4
P O5' C5' H5'' 67.0 59.6
OP1 P OP3 OP2   233.5
OP1 P OP3 O5'   125.8
OP2 P OP3 O5'   252.3
OP3 P OP2 HOP2   282.5
OP3 P O5' C5'   305.8
HOP2 OP2 P O5' 55.8 175.4
HOP2 OP2 P OP3   282.5
C5' O5' P OP3   305.8
C4' C5' O5' H5' 234.7 239.6
C4' C5' O5' H5'' 125.3 120.4
O5' C5' C4' O4' 283.5 62.4
O5' C5' C4' C3' 39.7 179.5
O5' C5' C4' H4' 159.7 305.3
H5' C5' O5' H5'' 250.5 240.8
O5' C5' C4' H5' 125.2 119.6
O5' C5' C4' H5'' 234.8 240.5
H5' C5' C4' H5'' 109.5 120.9
O4' C4' C5' C3' 243.7 242.9
O4' C4' C5' H4' 123.7 117.1
C5' C4' O4' C1' 138.6 108.6
C3' C4' C5' H4' 240.0 234.2
C5' C4' C3' O3' 109.6 154.2
C5' C4' C3' C2' 229.8 271.2
C5' C4' C3' H3' 353.6 34.0
O5' C5' H5' C4' 235.6 240.5
O5' C5' H5' H5'' 117.7 119.0
C4' C5' H5' H5'' 242.2 238.5
H5' C5' C4' O4' 158.2 302.9
H5' C5' C4' C3' 274.5 60.0
H5' C5' C4' H4' 34.5 185.7
O5' C5' H5'' C4' 124.4 119.4
O5' C5' H5'' H5' 242.3 241.0
C4' C5' H5'' H5' 117.9 121.5
H5'' C5' C4' O4' 48.7 181.9
H5'' C5' C4' C3' 165.0 299.0
H5'' C5' C4' H4' 285.0 64.8
O4' C4' C5' H5' 158.2 302.9
O4' C4' C5' H5'' 48.7 181.9
C5' C4' O4' C3' 120.6 121.4
C5' C4' O4' H4' 240.3 241.8
C3' C4' O4' H4' 119.7 120.5
O4' C4' C3' O3' 225.9 272.3
O4' C4' C3' C2' 346.1 29.2
O4' C4' C3' H3' 109.9 152.1
C4' O4' C1' C2' 345.6 351.0
C4' O4' C1' N1 225.5 228.3
C4' O4' C1' H1' 106.7 111.3
C3' C4' C5' H5' 274.5 60.0
C3' C4' C5' H5'' 165.0 299.0
C5' C4' C3' O4' 243.7 241.9
C5' C4' C3' H4' 120.0 124.3
O4' C4' C3' H4' 236.3 242.4
C3' C4' O4' C1' 18.0 347.3
O3' C3' C4' C2' 239.8 243.1
O3' C3' C4' H3' 116.0 120.2
C4' C3' O3' HO3' 180.0 196.3
C2' C3' C4' H3' 236.2 237.2
C4' C3' C2' C1' 5.7 326.6
C4' C3' C2' H2' 130.9 84.1
C4' C3' C2' H2'' 240.4 205.7
H4' C4' C5' H5' 34.5 185.7
H4' C4' C5' H5'' 285.0 64.8
C5' C4' H4' O4' 118.6 117.1
C5' C4' H4' C3' 237.2 233.8
O4' C4' H4' C3' 118.6 116.7
H4' C4' O4' C1' 258.3 226.8
H4' C4' C3' O3' 349.6 29.9
H4' C4' C3' C2' 109.8 146.9
H4' C4' C3' H3' 233.6 269.7
C1' O4' C4' C3' 18.0 347.3
C1' O4' C4' H4' 258.3 226.8
C3' C2' C1' O4' 4.9 26.9
O4' C1' C2' H2' 239.6 270.0
O4' C1' C2' H2'' 130.1 149.4
C2' C1' O4' N1 120.1 122.7
C2' C1' O4' H1' 238.9 239.7
N1 C1' O4' H1' 118.8 117.0
O4' C1' N1 C2 251.2 212.9
O4' C1' N1 C6 79.5 22.0
O3' C3' C4' H4' 349.6 29.9
C4' C3' O3' C2' 118.5 112.7
C4' C3' O3' H3' 242.2 236.1
C2' C3' O3' H3' 123.7 123.4
O3' C3' C2' C1' 131.4 83.6
O3' C3' C2' H2' 256.7 201.1
O3' C3' C2' H2'' 6.1 322.8
C2' C3' C4' H4' 109.8 146.9
C4' C3' C2' O3' 234.2 242.9
C4' C3' C2' H3' 118.1 123.0
O4' C1' C2' C3' 4.9 26.9
O3' C3' C2' H3' 243.8 240.1
C2' C3' O3' HO3' 61.5 83.6
C1' C2' C3' H2' 234.8 242.5
C1' C2' C3' H2'' 125.3 120.8
C3' C2' C1' N1 125.5 147.4
C3' C2' C1' H1' 244.3 268.8
H2' C2' C3' H2'' 250.5 238.3
H3' C3' C4' H4' 233.6 269.7
C4' C3' H3' O3' 124.4 121.7
C4' C3' H3' C2' 243.0 242.9
O3' C3' H3' C2' 118.7 121.3
H3' C3' O3' HO3' 297.8 320.1
H3' C3' C2' C1' 247.6 203.6
H3' C3' C2' H2' 12.8 321.1
H3' C3' C2' H2'' 122.3 82.7
HO3' O3' C3' C2' 61.5 83.6
HO3' O3' C3' H3' 297.8 320.1
O4' C1' C2' N1 239.4 239.5
O4' C1' C2' H1' 120.6 118.1
C1' C2' C3' H3' 247.6 203.6
C3' C2' C1' H2' 125.2 116.9
C3' C2' C1' H2'' 234.7 237.5
H2' C2' C1' H2'' 109.5 120.7
N1 C1' C2' H1' 241.2 238.6
C2' C1' N1 C2 132.8 93.5
C2' C1' N1 C6 321.1 262.6
H2' C2' C3' H3' 12.8 321.1
C3' C2' H2' C1' 238.0 247.7
C3' C2' H2' H2'' 119.0 125.1
C1' C2' H2' H2'' 241.0 237.3
H2' C2' C1' N1 0.3 30.6
H2' C2' C1' H1' 119.1 151.9
H2'' C2' C3' H3' 122.3 82.7
C3' C2' H2'' C1' 122.1 115.6
C3' C2' H2'' H2' 241.1 237.5
C1' C2' H2'' H2' 119.0 122.0
H2'' C2' C1' N1 250.8 269.9
H2'' C2' C1' H1' 9.6 31.3
O4' C1' N1 C2' 118.4 119.4
O4' C1' N1 H1' 239.5 242.9
N1 C1' C2' H2' 0.3 30.6
N1 C1' C2' H2'' 250.8 269.9
C2' C1' N1 H1' 121.1 123.5
C2 N1 C1' C6 171.7 191.0
C1' N1 C2 O2 0.3 357.9
C1' N1 C2 N3 181.0 178.3
C1' N1 C6 C5 198.5 151.2
C1' N1 C6 H61 323.8 30.1
C1' N1 C6 H62 73.3 273.3
O4' C1' H1' C2' 241.3 242.3
O4' C1' H1' N1 120.9 118.0
H1' C1' C2' H2' 119.1 151.9
H1' C1' C2' H2'' 9.6 31.3
C2' C1' H1' N1 239.7 235.7
H1' C1' N1 C2 11.7 330.0
H1' C1' N1 C6 200.0 139.1
C2 N1 C1' H1' 11.7 330.0
C1' N1 C2 C6 189.4 168.6
C2 N1 C6 C5 27.3 320.2
C2 N1 C6 H61 152.6 199.1
C2 N1 C6 H62 262.0 82.3
O2 C2 N1 N3 179.2 179.6
N1 C2 N3 C4 0.3 9.5
N1 C2 N3 H3 180.3 187.2
C6 N1 C1' H1' 200.0 139.1
C1' N1 C6 C2 171.2 191.0
C6 N1 C2 O2 170.8 189.3
C6 N1 C2 N3 351.6 9.7
C4 C5 C6 N1 323.6 50.2
C5M C5 C6 N1 83.9 174.5
O5 C5 C6 N1 203.5 293.7
C5 C6 N1 H61 234.7 121.1
C5 C6 N1 H62 125.3 238.0
H61 C6 N1 H62 250.5 116.8
O2 C2 N1 C6 170.8 189.3
N1 C2 O2 N3 180.8 180.4
O2 C2 N3 C4 181.0 189.9
O2 C2 N3 H3 1.0 7.6
N3 C2 N1 C6 351.6 9.7
N1 C2 N3 O2 179.3 179.6
C4 N3 C2 H3 180.0 182.3
C2 N3 C4 O4 166.2 181.4
C2 N3 C4 C5 346.3 4.4
C2 N3 C4 H3 180.0 177.7
O4 C4 N3 C5 179.9 177.0
N3 C4 C5 C5M 270.8 202.4
N3 C4 C5 O5 150.8 84.0
N3 C4 C5 C6 31.6 326.1
C2 N3 H3 C4 180.0 182.0
H3 N3 C4 O4 346.2 3.6
H3 N3 C4 C5 166.3 186.6
O4 C4 N3 H3 346.2 3.6
N3 C4 O4 C5 180.1 183.3
O4 C4 C5 C5M 90.9 25.4
O4 C4 C5 O5 330.9 267.0
O4 C4 C5 C6 211.7 149.1
N1 C6 C5 C4 323.6 50.2
C5 C4 N3 H3 166.3 186.6
N3 C4 C5 O4 179.9 177.0
C5M C5 C4 O5 120.0 118.3
C5M C5 C4 C6 239.2 236.3
C4 C5 C5M H71 180.1 198.1
C4 C5 C5M H72 305.2 318.1
C4 C5 C5M H73 54.7 78.2
O5 C5 C4 C6 119.2 118.0
C4 C5 O5 HO5 180.0 267.9
C4 C5 C6 H61 198.3 169.9
C4 C5 C6 H62 88.9 290.7
N1 C6 C5 C5M 83.9 174.5
C4 C5 C5M O5 240.4 243.0
C4 C5 C5M C6 122.2 123.7
O5 C5 C5M C6 241.8 240.7
C5M C5 O5 HO5 60.8 147.6
C5M C5 C6 H61 318.7 294.1
C5M C5 C6 H62 209.2 54.9
H71 C5M C5 H72 234.8 240.0
H71 C5M C5 H73 125.4 119.9
H72 C5M C5 H73 250.5 239.9
N1 C6 C5 O5 203.5 293.7
C4 C5 O5 C5M 119.2 120.3
C4 C5 O5 C6 238.4 240.8
C5M C5 O5 C6 119.2 120.5
O5 C5 C5M H71 299.6 315.2
O5 C5 C5M H72 64.8 75.2
O5 C5 C5M H73 174.3 195.2
O5 C5 C6 H61 78.2 53.4
O5 C5 C6 H62 328.8 174.2
N1 C6 C5 H61 125.3 240.3
N1 C6 C5 H62 234.7 119.5
C4 C5 C6 C5M 239.6 235.8
C4 C5 C6 O5 120.1 116.6
C5M C5 C6 O5 240.4 240.8
C6 C5 C5M H71 57.8 74.5
C6 C5 C5M H72 183.0 194.5
C6 C5 C5M H73 292.5 314.5
C6 C5 O5 HO5 301.6 27.1
H61 C6 C5 H62 109.4 239.2
H71 C5M C5 O5 299.6 315.2
H71 C5M C5 C6 57.8 74.5
C5 C5M H71 H72 125.2 121.4
C5 C5M H71 H73 234.7 238.7
H72 C5M H71 H73 109.5 117.3
H72 C5M C5 O5 64.8 75.2
H72 C5M C5 C6 183.0 194.5
C5 C5M H72 H71 236.9 238.7
C5 C5M H72 H73 118.4 121.4
H71 C5M H72 H73 241.5 242.7
H73 C5M C5 O5 174.3 195.2
H73 C5M C5 C6 292.5 314.5
C5 C5M H73 H71 123.2 121.3
C5 C5M H73 H72 241.6 238.6
H71 C5M H73 H72 118.4 117.3
HO5 O5 C5 C6 301.6 27.1
N1 C6 H61 C5 234.7 122.2
N1 C6 H61 H62 117.4 244.4
C5 C6 H61 H62 242.7 122.2
N1 C6 H62 C5 125.3 237.6
N1 C6 H62 H61 242.6 116.1
C5 C6 H62 H61 117.3 238.5