PDB Chemical Component 63Y
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 63Y
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
NAB |
C2 |
1.280 |
1.387 |
C2 |
N3 |
1.340 |
1.320 |
C2 |
N1 |
1.317 |
1.327 |
N3 |
C4 |
1.339 |
1.339 |
N1 |
C6 |
1.336 |
1.324 |
C4 |
SAL |
1.812 |
1.758 |
C4 |
C5 |
1.371 |
1.396 |
SAL |
CAT |
1.737 |
1.753 |
C6 |
C5 |
1.393 |
1.419 |
C6 |
NAC |
1.363 |
1.384 |
C5 |
CAP |
1.393 |
1.452 |
CAT |
CAP |
1.372 |
1.328 |
CAT |
SAK |
1.838 |
1.762 |
CAP |
CAA |
1.541 |
1.508 |
SAK |
CAQ |
1.593 |
1.763 |
CAQ |
CAH |
1.402 |
1.389 |
CAQ |
CAS |
1.394 |
1.391 |
CAH |
CAG |
1.385 |
1.382 |
CAG |
CAN |
1.387 |
1.384 |
FAF |
CAS |
1.550 |
1.350 |
CAS |
CAR |
1.395 |
1.384 |
CAN |
CAR |
1.375 |
1.387 |
CAN |
FAD |
1.358 |
1.351 |
CAR |
FAE |
1.175 |
1.351 |
CAG |
H1 |
1.080 |
1.080 |
CAH |
H2 |
1.080 |
1.080 |
NAB |
H3 |
1.000 |
0.970 |
NAB |
H4 |
1.000 |
0.970 |
NAC |
H5 |
1.000 |
0.970 |
NAC |
H6 |
1.001 |
0.970 |
CAA |
H7 |
1.100 |
1.089 |
CAA |
H8 |
1.100 |
1.090 |
CAA |
H9 |
1.100 |
1.090 |
Bond Angles for 63Y
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N3 |
C4 |
SAL |
121.9 |
131.1 |
N1 |
C6 |
NAC |
117.2 |
120.5 |
C5 |
C4 |
SAL |
113.1 |
109.8 |
C4 |
SAL |
CAT |
86.3 |
92.3 |
C4 |
C5 |
CAP |
112.6 |
112.1 |
SAL |
CAT |
CAP |
116.1 |
111.3 |
C6 |
C5 |
CAP |
133.3 |
130.3 |
C6 |
NAC |
H5 |
109.5 |
120.0 |
C6 |
NAC |
H6 |
109.5 |
120.0 |
C5 |
CAP |
CAT |
111.7 |
114.6 |
C5 |
CAP |
CAA |
127.0 |
122.7 |
CAT |
CAP |
CAA |
121.2 |
122.6 |
CAP |
CAA |
H7 |
109.5 |
109.4 |
CAP |
CAA |
H8 |
109.5 |
109.5 |
CAP |
CAA |
H9 |
109.5 |
109.4 |
CAQ |
CAH |
H2 |
119.3 |
120.0 |
CAH |
CAG |
H1 |
120.5 |
120.0 |
FAF |
CAS |
CAR |
124.3 |
120.1 |
CAS |
CAR |
FAE |
121.1 |
120.0 |
H3 |
NAB |
H4 |
109.5 |
120.1 |
H5 |
NAC |
H6 |
109.5 |
120.0 |
H7 |
CAA |
H8 |
109.4 |
109.5 |
H7 |
CAA |
H9 |
109.5 |
109.5 |
H8 |
CAA |
H9 |
109.5 |
109.5 |
Torsion Angles for 63Y
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N1 |
C6 |
NAC |
177.0 |
180.0 |
C5 |
C4 |
N3 |
SAL |
181.3 |
180.3 |
N3 |
C4 |
SAL |
CAT |
178.4 |
180.3 |
N3 |
C4 |
C5 |
CAP |
180.6 |
179.7 |
N1 |
C6 |
C5 |
CAP |
178.2 |
180.1 |
N1 |
C6 |
NAC |
H5 |
360.0 |
343.4 |
N1 |
C6 |
NAC |
H6 |
120.0 |
163.4 |
SAL |
C4 |
C5 |
CAP |
1.8 |
0.0 |
C4 |
SAL |
CAT |
CAP |
3.1 |
0.0 |
N3 |
C4 |
C5 |
SAL |
178.8 |
179.7 |
C5 |
C4 |
SAL |
CAT |
357.3 |
360.0 |
C6 |
C5 |
C4 |
CAP |
181.5 |
180.1 |
C4 |
C5 |
CAP |
CAT |
0.6 |
360.0 |
C4 |
C5 |
CAP |
CAA |
181.8 |
180.0 |
C5 |
CAP |
CAT |
SAL |
357.2 |
360.0 |
SAL |
CAT |
CAP |
CAA |
176.1 |
180.0 |
C6 |
C5 |
C4 |
SAL |
183.3 |
180.1 |
C4 |
C5 |
C6 |
CAP |
178.1 |
179.9 |
C6 |
C5 |
CAP |
CAT |
178.7 |
179.9 |
C6 |
C5 |
CAP |
CAA |
359.9 |
359.9 |
NAC |
C6 |
C5 |
CAP |
3.0 |
0.1 |
H5 |
NAC |
C6 |
H6 |
240.0 |
180.1 |
CAP |
C5 |
C4 |
SAL |
1.8 |
0.0 |
SAL |
CAT |
CAP |
C5 |
357.2 |
360.0 |
CAT |
CAP |
C5 |
CAA |
178.8 |
180.0 |
C5 |
CAP |
CAA |
H7 |
89.3 |
83.7 |
C5 |
CAP |
CAA |
H8 |
209.3 |
203.7 |
C5 |
CAP |
CAA |
H9 |
329.3 |
323.7 |
C5 |
CAP |
CAT |
CAA |
181.1 |
180.0 |
CAT |
CAP |
CAA |
H7 |
270.6 |
263.7 |
CAT |
CAP |
CAA |
H8 |
30.6 |
23.7 |
CAT |
CAP |
CAA |
H9 |
150.6 |
143.7 |
C4 |
SAL |
CAT |
SAK |
182.9 |
180.0 |
C5 |
CAP |
CAT |
SAK |
177.4 |
180.0 |
C5 |
CAP |
CAA |
CAT |
178.7 |
180.0 |
H7 |
CAA |
CAP |
H8 |
240.0 |
239.9 |
H7 |
CAA |
CAP |
H9 |
120.0 |
120.0 |
H8 |
CAA |
CAP |
H9 |
240.0 |
240.0 |
SAK |
CAQ |
CAH |
H2 |
359.7 |
359.8 |
CAQ |
CAH |
CAG |
H1 |
179.3 |
179.8 |
FAF |
CAS |
CAR |
FAE |
360.0 |
0.0 |
H2 |
CAH |
CAG |
H1 |
359.3 |
0.0 |
C6 |
NAC |
H5 |
H6 |
120.0 |
179.9 |
C6 |
NAC |
H6 |
H5 |
239.9 |
180.1 |
CAP |
CAA |
H7 |
H8 |
120.0 |
120.0 |
CAP |
CAA |
H7 |
H9 |
240.0 |
240.1 |
H8 |
CAA |
H7 |
H9 |
120.0 |
120.0 |
CAP |
CAA |
H8 |
H7 |
240.0 |
240.0 |
CAP |
CAA |
H8 |
H9 |
120.0 |
119.9 |
H7 |
CAA |
H8 |
H9 |
240.0 |
239.9 |
CAP |
CAA |
H9 |
H7 |
120.0 |
119.9 |
CAP |
CAA |
H9 |
H8 |
240.0 |
240.0 |
H7 |
CAA |
H9 |
H8 |
120.0 |
120.1 |