PDB Chemical Component 63Y

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 63Y

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
NAB C2 1.280 1.387
C2 N3 1.340 1.320
C2 N1 1.317 1.327
N3 C4 1.339 1.339
N1 C6 1.336 1.324
C4 SAL 1.812 1.758
C4 C5 1.371 1.396
SAL CAT 1.737 1.753
C6 C5 1.393 1.419
C6 NAC 1.363 1.384
C5 CAP 1.393 1.452
CAT CAP 1.372 1.328
CAT SAK 1.838 1.762
CAP CAA 1.541 1.508
SAK CAQ 1.593 1.763
CAQ CAH 1.402 1.389
CAQ CAS 1.394 1.391
CAH CAG 1.385 1.382
CAG CAN 1.387 1.384
FAF CAS 1.550 1.350
CAS CAR 1.395 1.384
CAN CAR 1.375 1.387
CAN FAD 1.358 1.351
CAR FAE 1.175 1.351
CAG H1 1.080 1.080
CAH H2 1.080 1.080
NAB H3 1.000 0.970
NAB H4 1.000 0.970
NAC H5 1.000 0.970
NAC H6 1.001 0.970
CAA H7 1.100 1.089
CAA H8 1.100 1.090
CAA H9 1.100 1.090

Bond Angles for 63Y

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
N3 C4 SAL 121.9 131.1
N1 C6 NAC 117.2 120.5
C5 C4 SAL 113.1 109.8
C4 SAL CAT 86.3 92.3
C4 C5 CAP 112.6 112.1
SAL CAT CAP 116.1 111.3
C6 C5 CAP 133.3 130.3
C6 NAC H5 109.5 120.0
C6 NAC H6 109.5 120.0
C5 CAP CAT 111.7 114.6
C5 CAP CAA 127.0 122.7
CAT CAP CAA 121.2 122.6
CAP CAA H7 109.5 109.4
CAP CAA H8 109.5 109.5
CAP CAA H9 109.5 109.4
CAQ CAH H2 119.3 120.0
CAH CAG H1 120.5 120.0
FAF CAS CAR 124.3 120.1
CAS CAR FAE 121.1 120.0
H3 NAB H4 109.5 120.1
H5 NAC H6 109.5 120.0
H7 CAA H8 109.4 109.5
H7 CAA H9 109.5 109.5
H8 CAA H9 109.5 109.5

Torsion Angles for 63Y

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 NAC 177.0 180.0
C5 C4 N3 SAL 181.3 180.3
N3 C4 SAL CAT 178.4 180.3
N3 C4 C5 CAP 180.6 179.7
N1 C6 C5 CAP 178.2 180.1
N1 C6 NAC H5 360.0 343.4
N1 C6 NAC H6 120.0 163.4
SAL C4 C5 CAP 1.8 0.0
C4 SAL CAT CAP 3.1 0.0
N3 C4 C5 SAL 178.8 179.7
C5 C4 SAL CAT 357.3 360.0
C6 C5 C4 CAP 181.5 180.1
C4 C5 CAP CAT 0.6 360.0
C4 C5 CAP CAA 181.8 180.0
C5 CAP CAT SAL 357.2 360.0
SAL CAT CAP CAA 176.1 180.0
C6 C5 C4 SAL 183.3 180.1
C4 C5 C6 CAP 178.1 179.9
C6 C5 CAP CAT 178.7 179.9
C6 C5 CAP CAA 359.9 359.9
NAC C6 C5 CAP 3.0 0.1
H5 NAC C6 H6 240.0 180.1
CAP C5 C4 SAL 1.8 0.0
SAL CAT CAP C5 357.2 360.0
CAT CAP C5 CAA 178.8 180.0
C5 CAP CAA H7 89.3 83.7
C5 CAP CAA H8 209.3 203.7
C5 CAP CAA H9 329.3 323.7
C5 CAP CAT CAA 181.1 180.0
CAT CAP CAA H7 270.6 263.7
CAT CAP CAA H8 30.6 23.7
CAT CAP CAA H9 150.6 143.7
C4 SAL CAT SAK 182.9 180.0
C5 CAP CAT SAK 177.4 180.0
C5 CAP CAA CAT 178.7 180.0
H7 CAA CAP H8 240.0 239.9
H7 CAA CAP H9 120.0 120.0
H8 CAA CAP H9 240.0 240.0
SAK CAQ CAH H2 359.7 359.8
CAQ CAH CAG H1 179.3 179.8
FAF CAS CAR FAE 360.0 0.0
H2 CAH CAG H1 359.3 0.0
C6 NAC H5 H6 120.0 179.9
C6 NAC H6 H5 239.9 180.1
CAP CAA H7 H8 120.0 120.0
CAP CAA H7 H9 240.0 240.1
H8 CAA H7 H9 120.0 120.0
CAP CAA H8 H7 240.0 240.0
CAP CAA H8 H9 120.0 119.9
H7 CAA H8 H9 240.0 239.9
CAP CAA H9 H7 120.0 119.9
CAP CAA H9 H8 240.0 240.0
H7 CAA H9 H8 120.0 120.1