Atom Nomenclature for 63V

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 63V

Atom Name (V3) Atom Name (V2)
OAU O1
CAK C1
OAV O2
CAD C2
NAC N1
CAE C3
CAJ C4
CAF C5
SAA S1
CB C6
CA C7
C C8
O O3
N N2
CAM C9
OAO O4
CAN C10
CAP C11
SAT S2
CAS C12
CAR C13
CAQ C14
H1 H1
H6 H6
H7 H7
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19