Atom Nomenclature for 62P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 62P

Atom Name (V3) Atom Name (V2)
C2 C2
C3 C3
S8 S8
O19 O19
O18 O18
C9 C9
O13 O13
C12 C12
C17 C17
C16 C16
C15 C15
CL21 CL21
C14 C14
C11 C11
C10 C10
C20 C20
N4 N4
N5 N5
C6 C6
O7 O7
C1 C1
H2 H2
H17 H17
H16 H16
H14 H14
H201 1H20
H202 2H20
H203 3H20
HN5 HN5
H1 H1