Atom Nomenclature for 61P

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 61P

Atom Name (V3) Atom Name (V2)
C11 C1
C12 C2
C13 C3
C14 C4
C15 C5
N4 N1
O1 O1
C18 C6
C19 C7
C20 C8
C21 C9
C28 C10
C27 C11
C26 C12
C25 C13
C24 C14
C23 C15
N7 N2
C22 C16
N6 N3
N5 N4
C17 C17
C16 C18
C29 C19
H1 H1
H4 H4
H5 H5
H6 H6
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H20 H20
H21 H21
H23 H23
N1 N5
N2 N6
C3 C20
C4 C21
O2 O2
N3 N7
C7 C22
C8 C23
N8 N8
C2 C24
C6 C25
C9 C26
C5 C27
C10 C28
C30 C30
C1 C31
H2 H2
H3 H3
H7 H7
H19 H19
H22 H22
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30