Atom Nomenclature for 61E

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 61E

Atom Name (V3) Atom Name (V2)
C26 C26
N3 N3
C25 C25
C24 C24
C23 C23
C22 C22
O4 O4
C20 C20
C18 C18
C19 C19
O3 O3
C17 C17
C15 C15
C16 C16
N2 N2
C21 C21
C14 C14
C1 C1
C13 C13
C4 C4
C5 C5
O1 O1
N1 N1
C6 C6
O2 O2
C3 C3
C2 C2
C7 C7
C12 C12
C11 C11
C10 C10
C9 C9
C8 C8
CL1 CL1
H26 H26
H26A H26A
H26B H26B
H25 H25
H25A H25A
H25B H25B
H24 H24
H24A H24A
H23 H23
H23A H23A
H22 H22
H22A H22A
H18 H18
HO3 HO3
H17 H17
H21 H21
H21A H21A
H21B H21B
H1 H1
HN1 HN1
H12 H12
H11 H11
H10 H10
H9 H9