PDB Chemical Component 60S
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 60S
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C24 |
C18 |
1.423 |
1.376 |
C24 |
C19 |
1.380 |
1.367 |
C18 |
C11 |
1.387 |
1.336 |
N21 |
C23 |
1.158 |
1.136 |
C23 |
C19 |
1.411 |
1.432 |
C19 |
S16 |
1.712 |
1.758 |
C28 |
C17 |
1.504 |
1.508 |
C11 |
S16 |
1.722 |
1.706 |
C11 |
C1 |
1.483 |
1.507 |
N12 |
C17 |
1.339 |
1.325 |
N12 |
C7 |
1.342 |
1.324 |
C17 |
C14 |
1.375 |
1.382 |
C13 |
C1 |
1.517 |
1.548 |
C13 |
N9 |
1.441 |
1.478 |
C1 |
C2 |
1.531 |
1.543 |
C1 |
N6 |
1.456 |
1.471 |
C14 |
F26 |
1.341 |
1.351 |
C14 |
C10 |
1.376 |
1.398 |
C7 |
N9 |
1.411 |
1.386 |
C7 |
N8 |
1.342 |
1.324 |
N9 |
C15 |
1.453 |
1.474 |
C2 |
C15 |
1.509 |
1.539 |
C2 |
C5 |
1.502 |
1.495 |
C10 |
N8 |
1.335 |
1.328 |
C10 |
N20 |
1.400 |
1.387 |
N6 |
C4 |
1.363 |
1.382 |
C5 |
O25 |
1.223 |
1.212 |
C5 |
N3 |
1.375 |
1.340 |
N20 |
C29 |
1.464 |
1.465 |
C4 |
N3 |
1.373 |
1.385 |
C4 |
N22 |
1.291 |
1.303 |
N3 |
C27 |
1.452 |
1.465 |
C2 |
H1 |
1.099 |
1.090 |
C15 |
H2 |
1.100 |
1.090 |
C15 |
H3 |
1.100 |
1.090 |
C18 |
H4 |
1.080 |
1.080 |
C24 |
H5 |
1.080 |
1.080 |
C13 |
H6 |
1.100 |
1.090 |
C13 |
H7 |
1.100 |
1.090 |
N20 |
H8 |
1.000 |
0.970 |
N22 |
H9 |
1.000 |
0.969 |
C27 |
H11 |
1.100 |
1.090 |
C27 |
H12 |
1.100 |
1.090 |
C27 |
H13 |
1.100 |
1.090 |
C28 |
H14 |
1.100 |
1.090 |
C28 |
H15 |
1.100 |
1.090 |
C28 |
H16 |
1.100 |
1.090 |
C29 |
H17 |
1.100 |
1.089 |
C29 |
H18 |
1.100 |
1.090 |
C29 |
H19 |
1.101 |
1.090 |
N6 |
H20 |
1.000 |
0.969 |
Bond Angles for 60S
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C24 |
C18 |
H4 |
123.3 |
122.4 |
C24 |
C19 |
S16 |
111.1 |
109.1 |
C18 |
C11 |
S16 |
109.9 |
111.0 |
C11 |
S16 |
C19 |
93.3 |
91.6 |
C11 |
C1 |
N6 |
113.6 |
112.1 |
N12 |
C17 |
C14 |
122.0 |
119.3 |
N12 |
C7 |
N9 |
117.6 |
119.1 |
N12 |
C7 |
N8 |
124.7 |
121.7 |
C17 |
C14 |
F26 |
122.0 |
120.8 |
C2 |
C1 |
N6 |
108.6 |
108.9 |
C1 |
C2 |
C15 |
106.0 |
103.9 |
C1 |
C2 |
C5 |
113.8 |
111.5 |
C1 |
C2 |
H1 |
109.3 |
110.2 |
C1 |
N6 |
C4 |
122.9 |
117.5 |
C1 |
N6 |
H20 |
118.6 |
121.2 |
C14 |
C10 |
N8 |
119.9 |
119.0 |
C14 |
C10 |
N20 |
117.8 |
120.4 |
N8 |
C7 |
N9 |
117.6 |
119.1 |
C7 |
N9 |
C15 |
119.5 |
111.0 |
C7 |
N8 |
C10 |
118.5 |
120.6 |
N9 |
C15 |
H2 |
111.6 |
109.9 |
N9 |
C15 |
H3 |
111.6 |
110.0 |
C5 |
C2 |
C15 |
108.2 |
110.3 |
C15 |
C2 |
H1 |
109.6 |
110.2 |
C2 |
C15 |
H2 |
111.6 |
109.9 |
C2 |
C15 |
H3 |
111.5 |
109.9 |
C2 |
C5 |
O25 |
120.5 |
118.1 |
C2 |
C5 |
N3 |
116.4 |
123.8 |
C5 |
C2 |
H1 |
109.7 |
110.5 |
N8 |
C10 |
N20 |
122.3 |
120.5 |
C10 |
N20 |
C29 |
113.2 |
120.0 |
C10 |
N20 |
H8 |
108.5 |
120.0 |
N6 |
C4 |
N22 |
122.4 |
121.3 |
N3 |
C5 |
O25 |
123.0 |
118.1 |
C4 |
N3 |
C5 |
124.6 |
120.6 |
C5 |
N3 |
C27 |
116.8 |
119.7 |
C29 |
N20 |
H8 |
108.5 |
120.0 |
N20 |
C29 |
H17 |
109.5 |
109.5 |
N20 |
C29 |
H18 |
109.4 |
109.5 |
N20 |
C29 |
H19 |
109.5 |
109.5 |
N3 |
C4 |
N22 |
120.2 |
121.3 |
C4 |
N3 |
C27 |
118.5 |
119.7 |
C4 |
N22 |
H9 |
112.0 |
120.0 |
N3 |
C27 |
H11 |
109.5 |
109.5 |
N3 |
C27 |
H12 |
109.4 |
109.4 |
N3 |
C27 |
H13 |
109.5 |
109.5 |
H2 |
C15 |
H3 |
109.5 |
109.8 |
H6 |
C13 |
H7 |
109.5 |
110.3 |
H11 |
C27 |
H12 |
109.5 |
109.4 |
H11 |
C27 |
H13 |
109.5 |
109.5 |
H12 |
C27 |
H13 |
109.5 |
109.5 |
H14 |
C28 |
H15 |
109.5 |
109.5 |
H14 |
C28 |
H16 |
109.5 |
109.5 |
H15 |
C28 |
H16 |
109.5 |
109.5 |
H17 |
C29 |
H18 |
109.5 |
109.5 |
H17 |
C29 |
H19 |
109.5 |
109.4 |
H18 |
C29 |
H19 |
109.5 |
109.5 |
Torsion Angles for 60S
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C24 |
C18 |
C11 |
S16 |
359.4 |
0.1 |
C19 |
C24 |
C18 |
H4 |
179.1 |
180.0 |
C11 |
S16 |
C19 |
C24 |
358.1 |
360.0 |
C18 |
C11 |
S16 |
C19 |
1.4 |
360.0 |
C18 |
C11 |
C1 |
N6 |
171.2 |
27.4 |
C24 |
C19 |
S16 |
C11 |
358.1 |
360.0 |
S16 |
C11 |
C1 |
N6 |
348.0 |
207.0 |
C2 |
C1 |
C11 |
N6 |
123.3 |
122.9 |
C11 |
C1 |
C2 |
C15 |
159.2 |
154.2 |
C11 |
C1 |
C2 |
H1 |
41.1 |
36.1 |
C11 |
C1 |
N6 |
C4 |
86.7 |
72.0 |
C11 |
C1 |
N6 |
H20 |
266.7 |
252.0 |
C17 |
N12 |
C7 |
N9 |
178.4 |
180.0 |
C17 |
N12 |
C7 |
N8 |
0.2 |
0.4 |
N12 |
C17 |
C14 |
F26 |
180.7 |
180.1 |
N8 |
C7 |
N12 |
N9 |
181.8 |
180.4 |
N12 |
C7 |
N9 |
C15 |
167.0 |
300.5 |
N12 |
C7 |
N8 |
C10 |
358.0 |
359.6 |
C17 |
C14 |
C10 |
N20 |
181.2 |
180.2 |
C13 |
C1 |
C2 |
H1 |
280.6 |
274.9 |
C13 |
C1 |
N6 |
H20 |
33.0 |
16.9 |
C13 |
N9 |
C15 |
H2 |
123.1 |
238.3 |
C13 |
N9 |
C15 |
H3 |
245.9 |
117.3 |
C11 |
C1 |
C2 |
N6 |
233.9 |
235.3 |
C2 |
C1 |
N6 |
C4 |
321.6 |
307.2 |
C2 |
C1 |
N6 |
H20 |
141.6 |
127.2 |
C5 |
C2 |
C1 |
C15 |
118.8 |
118.8 |
C15 |
C2 |
C1 |
H1 |
118.1 |
118.1 |
C1 |
C2 |
C15 |
H2 |
214.6 |
99.6 |
C1 |
C2 |
C15 |
H3 |
91.8 |
220.6 |
C1 |
C2 |
C5 |
O25 |
158.2 |
164.3 |
C1 |
C2 |
C5 |
N3 |
334.7 |
344.4 |
C5 |
C2 |
C1 |
H1 |
236.9 |
236.9 |
N6 |
C1 |
C2 |
C15 |
285.3 |
278.9 |
N6 |
C1 |
C2 |
C5 |
44.1 |
37.6 |
N6 |
C1 |
C2 |
H1 |
167.2 |
160.8 |
C1 |
N6 |
C4 |
N22 |
190.4 |
221.3 |
F26 |
C14 |
C10 |
N8 |
177.5 |
179.9 |
F26 |
C14 |
C10 |
N20 |
358.4 |
360.0 |
C7 |
N8 |
C10 |
C14 |
1.6 |
0.1 |
N8 |
C10 |
C14 |
N20 |
179.1 |
179.9 |
C14 |
C10 |
N20 |
C29 |
202.2 |
180.0 |
C14 |
C10 |
N20 |
H8 |
322.7 |
0.0 |
N12 |
C7 |
N9 |
N8 |
181.7 |
180.4 |
N9 |
C7 |
N8 |
C10 |
179.8 |
180.0 |
C7 |
N9 |
C15 |
H2 |
312.3 |
116.0 |
C7 |
N9 |
C15 |
H3 |
75.1 |
355.0 |
N12 |
C7 |
N8 |
N9 |
178.2 |
179.6 |
C14 |
C10 |
N8 |
C7 |
1.6 |
0.1 |
N8 |
C7 |
N9 |
C15 |
345.4 |
120.1 |
C7 |
N8 |
C10 |
N20 |
180.7 |
180.1 |
N9 |
C15 |
C2 |
H1 |
91.1 |
98.2 |
C2 |
C15 |
N9 |
H2 |
241.4 |
119.5 |
C2 |
C15 |
N9 |
H3 |
118.6 |
240.5 |
H2 |
C15 |
N9 |
H3 |
237.2 |
121.0 |
C15 |
C2 |
C1 |
N6 |
285.3 |
278.9 |
C1 |
C2 |
C15 |
C5 |
122.5 |
119.6 |
C1 |
C2 |
C15 |
H1 |
242.1 |
241.9 |
C7 |
N9 |
C15 |
C2 |
193.7 |
235.5 |
N9 |
C15 |
C2 |
H2 |
118.6 |
240.6 |
N9 |
C15 |
C2 |
H3 |
241.4 |
119.6 |
C15 |
C2 |
C5 |
O25 |
275.8 |
279.2 |
C15 |
C2 |
C5 |
N3 |
92.2 |
99.2 |
C5 |
C2 |
C15 |
H1 |
119.7 |
122.3 |
H2 |
C15 |
C2 |
H3 |
122.8 |
239.0 |
C5 |
C2 |
C1 |
N6 |
44.1 |
37.6 |
C1 |
C2 |
C5 |
C15 |
242.5 |
245.1 |
C1 |
C2 |
C5 |
H1 |
122.9 |
123.0 |
C15 |
C2 |
C5 |
H1 |
240.4 |
237.9 |
C5 |
C2 |
C15 |
H2 |
92.1 |
340.0 |
C5 |
C2 |
C15 |
H3 |
329.3 |
101.0 |
N3 |
C5 |
C2 |
O25 |
176.5 |
180.0 |
C4 |
N3 |
C5 |
C2 |
354.4 |
2.2 |
C2 |
C5 |
N3 |
C27 |
177.6 |
182.3 |
C14 |
C10 |
N8 |
N20 |
180.9 |
180.1 |
C10 |
N8 |
C7 |
N9 |
179.8 |
180.0 |
N8 |
C10 |
N20 |
C29 |
23.1 |
0.0 |
N8 |
C10 |
N20 |
H8 |
143.7 |
180.1 |
C14 |
C10 |
N20 |
N8 |
179.1 |
179.9 |
C29 |
N20 |
C10 |
H8 |
239.5 |
180.0 |
C10 |
N20 |
C29 |
H17 |
180.0 |
180.0 |
C10 |
N20 |
C29 |
H18 |
300.0 |
300.0 |
C10 |
N20 |
C29 |
H19 |
60.0 |
60.0 |
C1 |
N6 |
C4 |
H20 |
180.0 |
180.0 |
N3 |
C4 |
N6 |
N22 |
179.7 |
180.1 |
N6 |
C4 |
N3 |
C27 |
191.5 |
166.1 |
N6 |
C4 |
N22 |
H9 |
179.6 |
180.1 |
O25 |
C5 |
C2 |
C15 |
275.8 |
279.2 |
C2 |
C5 |
O25 |
N3 |
176.3 |
180.0 |
O25 |
C5 |
C2 |
H1 |
35.3 |
41.3 |
C4 |
N3 |
C5 |
O25 |
170.8 |
182.3 |
O25 |
C5 |
N3 |
C27 |
354.0 |
2.3 |
N3 |
C5 |
C2 |
C15 |
92.2 |
99.2 |
C2 |
C5 |
N3 |
O25 |
183.6 |
180.0 |
N3 |
C5 |
C2 |
H1 |
211.8 |
221.4 |
C5 |
N3 |
C4 |
N22 |
194.5 |
166.2 |
C4 |
N3 |
C5 |
C27 |
176.8 |
180.0 |
C5 |
N3 |
C27 |
H11 |
180.0 |
180.0 |
C5 |
N3 |
C27 |
H12 |
300.0 |
300.0 |
C5 |
N3 |
C27 |
H13 |
60.0 |
60.0 |
C10 |
N20 |
C29 |
H8 |
120.5 |
180.0 |
H17 |
C29 |
N20 |
H18 |
240.0 |
240.0 |
H17 |
C29 |
N20 |
H19 |
120.0 |
120.0 |
H18 |
C29 |
N20 |
H19 |
240.0 |
240.0 |
C1 |
N6 |
C4 |
N3 |
10.1 |
41.4 |
C2 |
C5 |
N3 |
C4 |
354.4 |
2.2 |
N6 |
C4 |
N3 |
N22 |
180.3 |
179.9 |
C5 |
N3 |
C4 |
C27 |
183.3 |
180.0 |
N3 |
C4 |
N22 |
H9 |
360.0 |
360.0 |
C4 |
N3 |
C27 |
H11 |
3.1 |
0.1 |
C4 |
N3 |
C27 |
H12 |
123.1 |
120.0 |
C4 |
N3 |
C27 |
H13 |
243.0 |
240.0 |
N22 |
C4 |
N3 |
C5 |
194.5 |
166.2 |
N22 |
C4 |
N3 |
C27 |
11.2 |
346.2 |
C27 |
N3 |
C5 |
O25 |
354.0 |
2.3 |
C4 |
N3 |
C27 |
C5 |
183.0 |
180.0 |
C27 |
N3 |
C4 |
N22 |
11.2 |
346.2 |
H11 |
C27 |
N3 |
H12 |
240.0 |
240.1 |
H11 |
C27 |
N3 |
H13 |
120.0 |
120.1 |
H12 |
C27 |
N3 |
H13 |
240.0 |
240.0 |
H1 |
C2 |
C1 |
N6 |
167.2 |
160.8 |
C1 |
C2 |
H1 |
C15 |
115.8 |
114.1 |
C1 |
C2 |
H1 |
C5 |
234.5 |
236.3 |
C5 |
C2 |
H1 |
C15 |
241.3 |
237.8 |
H1 |
C2 |
C15 |
H2 |
332.5 |
217.7 |
H1 |
C2 |
C15 |
H3 |
209.7 |
338.7 |
H1 |
C2 |
C5 |
O25 |
35.3 |
41.3 |
H1 |
C2 |
C5 |
N3 |
211.8 |
221.4 |
N9 |
C15 |
H2 |
H3 |
124.0 |
238.9 |
H2 |
C15 |
C2 |
H1 |
332.5 |
217.7 |
C2 |
C15 |
H2 |
H3 |
236.0 |
121.0 |
N9 |
C15 |
H3 |
H2 |
236.0 |
121.0 |
H3 |
C15 |
C2 |
H1 |
209.7 |
338.7 |
C2 |
C15 |
H3 |
H2 |
124.0 |
239.0 |
H4 |
C18 |
C11 |
S16 |
179.4 |
180.0 |
H5 |
C24 |
C18 |
H4 |
359.2 |
0.0 |
H5 |
C24 |
C19 |
S16 |
181.9 |
180.0 |
C10 |
N20 |
H8 |
C29 |
236.6 |
180.0 |
H8 |
N20 |
C29 |
H17 |
59.4 |
359.9 |
H8 |
N20 |
C29 |
H18 |
179.5 |
120.0 |
H8 |
N20 |
C29 |
H19 |
299.5 |
240.0 |
N3 |
C27 |
H11 |
H12 |
120.0 |
119.9 |
N3 |
C27 |
H11 |
H13 |
240.0 |
240.0 |
H12 |
C27 |
H11 |
H13 |
120.0 |
120.0 |
N3 |
C27 |
H12 |
H11 |
240.0 |
240.0 |
N3 |
C27 |
H12 |
H13 |
120.0 |
120.0 |
H11 |
C27 |
H12 |
H13 |
240.0 |
240.0 |
N3 |
C27 |
H13 |
H11 |
120.0 |
120.1 |
N3 |
C27 |
H13 |
H12 |
240.0 |
240.0 |
H11 |
C27 |
H13 |
H12 |
120.0 |
120.0 |
H15 |
C28 |
H14 |
H16 |
120.0 |
120.0 |
H14 |
C28 |
H15 |
H16 |
240.0 |
239.9 |
H14 |
C28 |
H16 |
H15 |
120.1 |
120.0 |
H17 |
C29 |
N20 |
H8 |
59.4 |
359.9 |
N20 |
C29 |
H17 |
H18 |
120.0 |
120.0 |
N20 |
C29 |
H17 |
H19 |
240.0 |
240.0 |
H18 |
C29 |
H17 |
H19 |
120.0 |
120.0 |
H18 |
C29 |
N20 |
H8 |
179.5 |
120.0 |
N20 |
C29 |
H18 |
H17 |
240.0 |
239.9 |
N20 |
C29 |
H18 |
H19 |
120.0 |
120.0 |
H17 |
C29 |
H18 |
H19 |
240.0 |
240.0 |
H19 |
C29 |
N20 |
H8 |
299.5 |
240.0 |
N20 |
C29 |
H19 |
H17 |
120.0 |
120.0 |
N20 |
C29 |
H19 |
H18 |
240.0 |
240.0 |
H17 |
C29 |
H19 |
H18 |
120.0 |
120.0 |
C1 |
N6 |
H20 |
C4 |
180.0 |
180.0 |
H20 |
N6 |
C4 |
N22 |
10.4 |
41.3 |