Atom Nomenclature for 60R

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 60R

Atom Name (V3) Atom Name (V2)
C10 C1
C13 C2
C14 C3
C15 C4
C16 C5
C17 C6
C18 C7
C19 C8
C22 C9
C23 C10
F F1
C12 C11
C11 C12
C9 C13
O3 O1
C21 C14
C20 C15
C8 C16
C7 C17
C6 C18
C5 C19
C4 C20
N N1
C1 C21
O1 O2
C3 C22
O2 O3
C2 C23
H1 H1
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16