PDB Chemical Component 60D

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 60D

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C21 N22 1.306 1.306
C21 C20 1.411 1.410
N22 N23 1.404 1.400
O26 S25 1.426 1.421
N17 C16 1.334 1.323
N17 C18 1.335 1.327
C20 C18 1.482 1.481
C20 C24 1.363 1.366
N23 S25 1.675 1.656
N23 C24 1.346 1.346
C16 C15 1.391 1.382
C18 N19 1.336 1.326
S25 C28 1.824 1.814
S25 O27 1.429 1.421
C28 C29 1.531 1.530
C28 C30 1.528 1.530
C15 C14 1.403 1.397
C29 C30 1.529 1.530
N19 C14 1.345 1.329
C14 N13 1.385 1.388
N13 C10 1.404 1.393
C10 C9 1.401 1.386
C10 N11 1.333 1.327
C9 C8 1.404 1.392
C2 C3 1.532 1.529
C2 C1 1.532 1.530
C2 N4 1.477 1.465
N11 C12 1.325 1.318
C8 N4 1.381 1.375
C8 C7 1.421 1.409
N4 C5 1.371 1.357
C12 C7 1.398 1.389
C7 C6 1.479 1.474
C5 C6 1.368 1.363
C6 C31 1.477 1.469
C31 O32 1.226 1.216
C31 N33 1.353 1.348
N33 C34 1.463 1.465
C34 C39 1.535 1.532
C34 C35 1.544 1.532
C39 C38 1.540 1.531
C35 C36 1.533 1.531
C36 O37 1.435 1.429
C38 O37 1.444 1.430
C5 H1 1.080 1.080
C9 H2 1.080 1.081
C12 H3 1.080 1.080
C3 H4 1.100 1.090
C3 H5 1.100 1.090
C3 H6 1.100 1.089
C1 H7 1.100 1.090
C1 H8 1.100 1.090
C1 H9 1.100 1.089
C2 H10 1.100 1.090
N13 H11 1.000 0.969
C15 H12 1.080 1.080
C16 H13 1.080 1.080
C21 H14 1.080 1.081
C24 H15 1.080 1.080
C28 H16 1.100 1.090
C29 H17 1.100 1.090
C29 H18 1.100 1.090
C30 H19 1.101 1.090
C30 H20 1.100 1.090
N33 H21 1.000 0.970
C34 H22 1.099 1.089
C35 H23 1.100 1.090
C35 H24 1.100 1.090
C36 H25 1.099 1.090
C36 H26 1.100 1.091
C38 H27 1.100 1.090
C38 H28 1.100 1.089
C39 H29 1.100 1.090
C39 H30 1.100 1.091

Bond Angles for 60D

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C21 N22 N23 108.9 108.5
N22 C21 H14 126.0 126.0
C21 C20 C24 107.1 107.4
N22 N23 S25 127.0 125.9
N22 N23 C24 107.5 108.3
O26 S25 C28 109.9 110.6
O26 S25 O27 121.7 121.0
N17 C16 H13 120.3 120.3
N17 C18 N19 120.4 121.6
C20 C24 N23 108.4 107.6
C20 C24 H15 125.8 126.2
C24 N23 S25 125.4 125.8
N23 S25 C28 104.1 104.5
N23 S25 O27 105.2 104.3
N23 C24 H15 125.8 126.2
C16 C15 H12 121.0 120.8
O27 S25 C28 110.4 110.5
S25 C28 C29 117.8 117.5
S25 C28 C30 119.0 117.5
S25 C28 H16 113.4 115.5
C29 C28 C30 60.0 60.0
C28 C29 C30 59.9 60.0
C29 C28 H16 118.3 117.5
C28 C29 H17 120.0 117.5
C28 C29 H18 120.0 117.5
C28 C30 C29 60.1 60.0
C30 C28 H16 118.4 117.5
C28 C30 H19 120.0 117.5
C28 C30 H20 120.0 117.5
C30 C29 H17 120.0 117.5
C30 C29 H18 120.0 117.5
C29 C30 H19 120.0 117.5
C29 C30 H20 120.0 117.5
C14 N13 C10 127.9 120.0
C14 N13 H11 116.1 120.0
C10 C9 H2 120.6 120.6
C10 N11 C12 122.4 122.1
C9 C8 N4 134.6 134.3
C2 C3 H4 109.5 109.5
C2 C3 H5 109.5 109.4
C2 C3 H6 109.5 109.5
C2 C1 H7 109.5 109.5
C2 C1 H8 109.5 109.5
C2 C1 H9 109.5 109.5
C8 N4 C2 122.8 124.8
N4 C2 H10 107.5 109.4
N11 C12 H3 119.7 119.9
N4 C5 H1 124.8 125.1
C7 C6 C31 126.1 126.8
C5 C6 C31 128.0 126.8
C6 C5 H1 124.8 125.1
C6 C31 O32 120.3 120.0
C6 C31 N33 119.5 120.0
O32 C31 N33 120.2 120.1
C31 N33 C34 121.8 119.9
C31 N33 H21 119.1 120.0
N33 C34 C39 109.7 109.5
N33 C34 C35 105.8 109.5
C34 N33 H21 119.1 120.0
N33 C34 H22 110.8 109.6
C35 C34 C39 111.0 109.0
C34 C39 C38 109.1 109.2
C39 C34 H22 109.8 109.6
C34 C39 H29 109.6 109.6
C34 C39 H30 109.6 109.5
C34 C35 C36 110.2 109.1
C35 C34 H22 109.7 109.6
C34 C35 H23 109.3 109.5
C34 C35 H24 109.3 109.5
C39 C38 H27 109.2 109.5
C39 C38 H28 109.1 109.5
C35 C36 O37 107.4 109.5
C36 C35 H23 109.3 109.5
C36 C35 H24 109.3 109.5
C35 C36 H25 110.0 109.5
C35 C36 H26 110.0 109.5
O37 C36 H25 110.0 109.5
O37 C36 H26 110.0 109.4
H4 C3 H5 109.5 109.4
H4 C3 H6 109.5 109.5
H5 C3 H6 109.5 109.5
H7 C1 H8 109.5 109.5
H7 C1 H9 109.4 109.4
H8 C1 H9 109.5 109.5
H17 C29 H18 109.5 115.6
H19 C30 H20 109.5 115.6
H23 C35 H24 109.5 109.6
H25 C36 H26 109.5 109.4
H27 C38 H28 109.5 109.5
H29 C39 H30 109.5 109.5

Torsion Angles for 60D

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
N22 C21 C20 C24 359.1 0.2
C21 N22 N23 S25 177.0 180.0
C21 N22 N23 C24 0.5 359.8
C21 C20 C24 N23 1.2 359.6
C21 C20 C24 H15 181.2 179.8
N23 N22 C21 H14 180.3 180.1
C20 C24 N23 N22 359.0 0.4
C24 N23 N22 S25 183.4 179.8
N22 N23 S25 C28 272.8 90.0
N22 N23 S25 O27 156.6 334.0
N22 N23 C24 H15 179.0 180.2
N23 S25 O26 C28 249.2 248.2
N23 S25 O26 O27 118.0 116.8
O27 S25 O26 C28 131.2 131.5
O26 S25 C28 C29 60.7 73.3
O26 S25 C28 C30 129.9 142.0
O26 S25 C28 H16 276.4 287.7
N17 C16 C15 H12 180.7 180.0
C18 N17 C16 H13 178.3 180.0
N22 N23 C24 C20 359.0 0.4
C20 C24 N23 S25 182.3 180.2
N23 C24 C20 H15 180.0 179.9
N22 N23 S25 C24 184.0 179.8
O26 S25 N23 C28 115.0 116.1
O26 S25 N23 O27 231.1 232.2
S25 N23 C24 H15 2.3 0.1
O27 S25 N23 C28 243.9 243.9
N23 S25 C28 C29 171.3 185.0
N23 S25 C28 C30 240.6 253.7
N23 S25 C28 H16 27.0 39.4
N22 N23 C24 S25 176.6 180.2
C20 C24 N23 H15 180.0 180.1
C24 N23 S25 C28 88.8 270.3
C24 N23 S25 O27 332.6 154.2
O26 S25 C28 O27 136.9 136.7
N23 S25 C28 O27 247.5 248.4
C29 C28 S25 C30 290.8 291.3
S25 C28 C29 C30 109.2 107.5
C29 C28 S25 H16 144.3 145.7
S25 C28 C29 H17 218.7 215.0
S25 C28 C29 H18 359.8 0.0
S25 C28 C30 C29 252.9 252.5
C30 C28 S25 H16 213.5 214.3
S25 C28 C30 H19 2.4 360.0
S25 C28 C30 H20 143.4 145.0
O26 S25 O27 C28 229.1 228.5
N23 S25 O27 C28 111.7 111.7
O27 S25 C28 C29 283.8 296.6
O27 S25 C28 C30 353.0 5.3
O27 S25 C28 H16 139.5 151.0
S25 C28 C29 H16 217.4 215.0
C29 C28 C30 C29 -0.0 -0.0
C30 C28 C29 H16 108.2 107.5
C29 C28 C30 H19 109.5 107.5
C29 C28 C30 H20 250.5 252.5
C30 C29 C28 H17 250.5 252.5
C30 C29 C28 H18 109.4 107.5
C28 C29 C30 H19 250.5 252.5
C28 C29 C30 H20 109.5 107.5
H17 C29 C28 H18 218.9 214.9
S25 C28 C30 H16 144.8 145.0
C30 C28 C29 C30 -0.0 -0.0
C29 C28 C30 H16 251.9 252.5
C30 C28 C29 H17 109.5 107.5
C30 C28 C29 H18 250.6 252.5
C28 C30 C29 H17 250.5 252.5
C28 C30 C29 H18 109.4 107.5
C29 C30 C28 H19 250.5 252.5
C29 C30 C28 H20 109.5 107.5
H19 C30 C28 H20 219.0 215.0
C15 C14 N13 H11 327.1 354.7
C30 C29 C28 C30 -0.0 -0.0
C30 C29 C28 H16 251.8 252.5
C28 C29 C30 H17 109.5 107.5
C28 C29 C30 H18 250.6 252.5
C29 C30 C28 H16 108.1 107.5
C28 C30 C29 H19 109.5 107.5
C28 C30 C29 H20 250.5 252.5
H17 C29 C30 H18 141.1 145.0
H19 C30 C29 H20 141.0 145.0
N19 C14 N13 H11 144.4 174.4
C14 N13 C10 H11 180.0 179.9
N13 C10 C9 H2 0.6 360.0
C14 N13 C10 C9 24.7 185.3
C10 C9 C8 N4 178.6 180.0
C14 N13 C10 N11 201.5 5.2
N11 C10 C9 H2 184.0 180.0
C10 N11 C12 H3 180.6 179.5
C9 C8 N4 C2 358.6 359.6
C8 N4 C2 C3 266.8 120.0
H4 C3 C2 H5 240.0 240.0
H4 C3 C2 H6 120.0 120.0
H5 C3 C2 H6 240.0 240.0
C1 C2 C3 H4 180.0 180.0
C1 C2 C3 H5 300.0 300.0
C1 C2 C3 H6 60.0 60.0
C8 N4 C2 C1 141.0 240.0
H7 C1 C2 H8 240.0 240.0
H7 C1 C2 H9 120.0 119.9
H8 C1 C2 H9 240.0 240.0
N4 C2 C3 H4 52.5 300.0
N4 C2 C3 H5 172.5 60.0
N4 C2 C3 H6 292.5 180.0
N4 C2 C1 H7 305.0 300.0
N4 C2 C1 H8 65.0 60.0
N4 C2 C1 H9 185.0 180.0
C2 N4 C5 H1 359.7 0.2
C8 N4 C2 H10 22.6 0.0
C8 N4 C5 H1 177.7 179.8
C8 C7 C6 C31 180.7 180.0
N4 C5 C6 C31 180.0 180.3
C6 C5 N4 H1 180.0 179.8
C12 C7 C6 C31 2.4 0.1
C5 C6 C7 C31 177.6 180.0
C7 C6 C5 H1 182.4 180.0
C7 C6 C31 O32 344.1 360.0
C7 C6 C31 N33 165.0 180.0
N4 C5 C6 H1 180.0 180.2
C7 C6 C5 C31 182.5 180.0
C5 C6 C31 O32 167.1 180.0
C5 C6 C31 N33 348.0 0.0
C31 C6 C5 H1 360.0 0.0
O32 C31 C6 N33 179.1 180.0
C6 C31 N33 C34 181.9 180.0
C6 C31 N33 H21 1.9 360.0
C6 C31 O32 N33 180.9 180.0
O32 C31 N33 C34 2.8 0.0
O32 C31 N33 H21 182.8 180.0
C6 C31 N33 O32 179.1 180.0
C31 N33 C34 C39 216.8 204.9
C31 N33 C34 C35 97.0 85.5
C34 N33 C31 H21 180.0 180.0
C31 N33 C34 H22 338.2 325.2
C31 N33 C34 H21 180.0 180.0
C35 C34 N33 C39 240.2 240.5
N33 C34 C39 C38 190.8 183.1
C39 C34 N33 H22 238.6 239.8
N33 C34 C39 H29 310.7 303.1
N33 C34 C39 H30 70.8 63.3
N33 C34 C35 C36 175.3 176.8
C35 C34 N33 H22 118.8 120.3
N33 C34 C35 H23 295.4 296.7
N33 C34 C35 H24 55.1 56.9
N33 C34 C39 C35 243.4 240.2
C39 C34 N33 H21 36.8 25.0
N33 C34 C39 H22 122.0 120.2
C39 C34 C35 C36 56.3 57.0
C35 C34 C39 H22 238.6 240.1
C39 C34 C35 H23 176.4 176.9
C39 C34 C35 H24 296.2 297.1
C34 C39 C38 H27 173.0 297.7
C34 C39 C38 H28 292.6 177.7
H29 C39 C34 H30 239.9 239.8
N33 C34 C35 C39 118.9 119.8
C35 C34 N33 H21 277.1 265.5
N33 C34 C35 H22 240.4 239.7
C35 C34 C39 C38 307.3 303.0
C39 C34 C35 H22 121.5 119.9
C35 C34 C39 H29 67.3 62.9
C35 C34 C39 H30 187.4 183.1
C34 C35 C36 O37 302.3 302.4
C36 C35 C34 H23 239.9 240.1
C36 C35 C34 H24 120.1 119.9
C34 C35 C36 H25 61.9 62.4
C34 C35 C36 H26 182.6 182.4
H23 C35 C34 H24 240.2 239.8
C38 C39 C34 H22 68.8 62.9
C34 C39 C38 H29 119.9 120.0
C34 C39 C38 H30 240.0 240.1
H27 C38 C39 H28 240.4 120.0
C36 C35 C34 C39 56.3 57.0
C36 C35 C34 H22 294.8 297.1
C34 C35 C36 H23 120.1 119.9
C34 C35 C36 H24 239.9 240.1
O37 C36 C35 H25 240.3 239.9
O37 C36 C35 H26 119.7 120.0
H23 C35 C36 H24 119.8 120.2
H25 C36 C35 H26 239.3 240.0
O37 C36 C35 H23 182.2 182.4
O37 C36 C35 H24 62.4 62.3
C35 C36 O37 H25 119.6 120.1
C35 C36 O37 H26 240.3 240.0
H25 C36 O37 H26 120.7 119.9
C34 C39 C38 O37 52.8 57.6
C38 O37 C36 H25 302.0 301.1
C38 O37 C36 H26 181.4 181.1
H1 C5 C6 C31 360.0 0.0
H2 C9 C8 N4 358.6 0.0
C2 C3 H4 H5 120.0 120.0
C2 C3 H4 H6 240.0 239.9
H5 C3 H4 H6 120.0 120.0
C2 C3 H5 H4 240.0 240.0
C2 C3 H5 H6 120.0 120.0
H4 C3 H5 H6 240.0 240.0
C2 C3 H6 H4 120.0 120.0
C2 C3 H6 H5 240.0 240.0
H4 C3 H6 H5 120.0 120.0
C2 C1 H7 H8 120.0 120.0
C2 C1 H7 H9 240.0 240.0
H8 C1 H7 H9 120.0 120.0
C2 C1 H8 H7 240.0 240.0
C2 C1 H8 H9 120.0 120.0
H7 C1 H8 H9 240.0 240.0
C2 C1 H9 H7 120.0 120.0
C2 C1 H9 H8 240.0 239.9
H7 C1 H9 H8 120.0 120.0
H10 C2 C3 H4 296.2 60.0
H10 C2 C3 H5 56.3 180.0
H10 C2 C3 H6 176.2 300.0
H10 C2 C1 H7 63.7 180.0
H10 C2 C1 H8 183.7 300.0
H10 C2 C1 H9 303.7 60.1
C14 N13 H11 C10 180.0 180.1
H13 C16 C15 H12 0.7 0.1
H14 C21 N22 N23 180.3 180.1
H14 C21 C20 C24 179.1 180.2
C20 C24 H15 N23 180.0 179.9
H15 C24 N23 S25 2.3 0.1
S25 C28 H16 C29 144.1 145.7
S25 C28 H16 C30 213.3 214.3
C29 C28 H16 C30 69.2 68.6
H16 C28 C29 C30 251.8 252.5
H16 C28 C29 H17 1.3 359.9
H16 C28 C29 H18 142.4 145.0
H16 C28 C30 C29 108.1 107.5
H16 C28 C30 H19 217.6 214.9
H16 C28 C30 H20 358.6 360.0
H17 C29 C28 C30 109.5 107.5
C28 C29 H17 C30 289.5 291.4
H17 C29 C28 H16 1.3 359.9
C28 C29 H17 H18 144.8 145.8
C30 C29 H17 H18 215.2 214.4
H17 C29 C30 H19 141.0 145.0
H17 C29 C30 H20 0.0 360.0
H18 C29 C28 C30 250.6 252.5
C28 C29 H18 C30 70.4 68.6
H18 C29 C28 H16 142.4 145.0
C28 C29 H18 H17 215.2 214.2
C30 C29 H18 H17 144.8 145.6
H18 C29 C30 H19 359.9 0.0
H18 C29 C30 H20 219.0 215.0
C28 C30 H19 C29 289.3 291.4
H19 C30 C28 H16 217.6 214.9
C28 C30 H19 H20 144.7 145.7
H19 C30 C29 H17 141.0 145.0
H19 C30 C29 H18 359.9 0.0
C29 C30 H19 H20 215.3 214.3
C28 C30 H20 C29 70.7 68.6
H20 C30 C28 H16 358.6 360.0
C28 C30 H20 H19 215.3 214.3
H20 C30 C29 H17 0.0 360.0
H20 C30 C29 H18 219.0 215.0
C29 C30 H20 H19 144.7 145.7
C31 N33 H21 C34 180.0 180.0
H21 N33 C34 C39 36.8 25.0
H21 N33 C34 C35 277.1 265.5
H21 N33 C34 H22 158.2 145.2
N33 C34 H22 C39 238.7 239.8
N33 C34 H22 C35 116.4 120.2
H22 C34 N33 H21 158.2 145.2
C35 C34 H22 C39 122.2 119.6
H22 C34 C39 C38 68.8 62.9
H22 C34 C39 H29 188.7 182.9
H22 C34 C39 H30 308.8 303.0
H22 C34 C35 C36 294.8 297.1
H22 C34 C35 H23 54.9 57.0
H22 C34 C35 H24 174.7 177.2
H23 C35 C34 C39 176.4 176.9
C34 C35 H23 C36 239.4 240.3
H23 C35 C34 H22 54.9 57.0
C34 C35 H23 H24 119.7 120.2
H23 C35 C36 O37 182.2 182.4
C36 C35 H23 H24 240.3 239.8
H23 C35 C36 H25 301.9 302.5
H23 C35 C36 H26 62.5 62.5
H24 C35 C34 C39 296.2 297.1
C34 C35 H24 C36 120.6 119.7
H24 C35 C34 H22 174.7 177.2
C34 C35 H24 H23 240.3 239.8
H24 C35 C36 O37 62.4 62.3
C36 C35 H24 H23 119.7 120.1
H24 C35 C36 H25 182.1 182.3
H24 C35 C36 H26 302.7 302.3
C35 C36 H25 O37 241.9 240.0
H25 C36 C35 H23 301.9 302.5
H25 C36 C35 H24 182.1 182.3
C35 C36 H25 H26 121.0 120.0
O37 C36 H25 H26 239.0 240.0
C35 C36 H26 O37 118.1 120.0
H26 C36 C35 H23 62.5 62.5
H26 C36 C35 H24 302.7 302.3
C35 C36 H26 H25 239.0 240.0
O37 C36 H26 H25 121.0 120.0
C39 C38 H27 H28 119.4 240.0
C39 C38 H28 H27 240.6 120.0
C34 C39 H29 C38 240.3 240.3
H29 C39 C34 H22 188.7 182.9
C34 C39 H29 H30 120.2 120.1
H29 C39 C38 H27 53.1 177.7
H29 C39 C38 H28 172.7 57.7
C34 C39 H30 C38 119.7 119.7
H30 C39 C34 H22 308.8 303.0
C34 C39 H30 H29 239.8 239.8
H30 C39 C38 H27 292.9 57.5
H30 C39 C38 H28 52.6 297.5