PDB Chemical Component 607

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 607

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C2 1.420 1.399
C1 C6 1.419 1.392
C1 C7 1.421 1.477
C2 C3 1.405 1.366
C2 HC2 1.078 1.080
C3 C4 1.365 1.390
C3 HC3 1.077 1.079
C4 C5 1.326 1.408
C4 N3 1.287 1.379
C5 C6 1.387 1.394
C5 N4 1.326 1.357
C6 HC6 1.081 1.080
C7 N1 1.315 1.332
C7 N2 1.312 1.333
N1 HH11 1.013 0.970
N1 HH12 0.997 0.971
N2 HH21 1.002 0.970
N2 HH22 0.999 0.970
N3 C8 1.296 1.370
N3 HN3 0.983 0.970
N4 C8 1.310 1.310
C8 C1' 1.410 1.477
C1' C2' 1.401 1.397
C1' C6' 1.402 1.398
C2' C3' 1.388 1.380
C2' HC2' 1.079 1.080
C3' CVX 1.549 1.507
C3' C4' 1.366 1.383
CVX CWX 1.536 1.508
CVX C6X 1.601 1.530
CVX H31B 1.079 1.091
CWX OXX 1.215 1.220
CWX OYX 1.214 1.219
C6X C7X 1.574 1.507
C6X H42A 1.079 1.090
C6X H42B 1.081 1.090
C7X O8X 1.223 1.275
C7X O9X 1.232 1.275
C4' C5' 1.385 1.393
C4' HC4' 1.078 1.080
C5' C6' 1.391 1.397
C5' C1B 1.404 1.484
C6' O6' 1.374 1.357
C1B C2B 1.398 1.400
C1B C6B 1.407 1.393
C2B C3B 1.388 1.388
C2B N2B 1.307 1.395
C3B C4B 1.376 1.381
C3B H3B 1.079 1.080
C4B C5B 1.385 1.385
C4B H4B 1.082 1.080
C5B C6B 1.399 1.380
C5B H5B 1.081 1.079
C6B H6B 1.082 1.080
N2B HN2A 0.988 0.970
N2B HN2B 0.979 0.970

Bond Angles for 607

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 C1 C6 116.9 120.2
C2 C1 C7 120.6 119.9
C1 C2 C3 122.5 120.5
C1 C2 HC2 119.8 119.8
C6 C1 C7 122.5 119.9
C1 C6 C5 118.5 119.5
C1 C6 HC6 121.2 120.2
C1 C7 N1 121.6 120.0
C1 C7 N2 118.7 120.0
C3 C2 HC2 117.8 119.7
C2 C3 C4 116.5 120.1
C2 C3 HC3 122.2 119.9
C4 C3 HC3 121.3 119.9
C3 C4 C5 123.2 120.1
C3 C4 N3 130.5 133.6
C5 C4 N3 106.3 106.2
C4 C5 C6 122.4 119.5
C4 C5 N4 112.7 107.1
C4 N3 C8 106.1 107.2
C4 N3 HN3 128.0 126.4
C6 C5 N4 124.9 133.4
C5 C6 HC6 120.4 120.2
C5 N4 C8 100.0 109.6
N1 C7 N2 119.8 119.9
C7 N1 HH11 117.9 120.0
C7 N1 HH12 127.8 120.0
C7 N2 HH21 119.9 119.9
C7 N2 HH22 121.8 120.0
HH11 N1 HH12 114.3 120.0
HH21 N2 HH22 118.2 120.0
C8 N3 HN3 125.8 126.3
N3 C8 N4 114.9 109.8
N3 C8 C1' 123.3 125.1
N4 C8 C1' 121.8 125.1
C8 C1' C2' 122.5 120.1
C8 C1' C6' 120.9 120.2
C2' C1' C6' 116.6 119.7
C1' C2' C3' 122.1 120.2
C1' C2' HC2' 119.1 119.9
C1' C6' C5' 122.7 119.6
C1' C6' O6' 118.0 120.2
C3' C2' HC2' 118.8 119.9
C2' C3' CVX 120.3 119.8
C2' C3' C4' 118.3 120.4
CVX C3' C4' 121.4 119.8
C3' CVX CWX 104.4 109.5
C3' CVX C6X 114.2 109.5
C3' CVX H31B 108.5 109.5
C3' C4' C5' 123.1 120.2
C3' C4' HC4' 119.0 119.9
CWX CVX C6X 110.4 109.5
CWX CVX H31B 109.1 109.4
CVX CWX OXX 117.8 119.9
CVX CWX OYX 117.8 120.0
C6X CVX H31B 110.0 109.5
CVX C6X C7X 115.3 109.5
CVX C6X H42A 110.1 109.4
CVX C6X H42B 110.4 109.4
OXX CWX OYX 124.3 120.0
C7X C6X H42A 107.6 109.5
C7X C6X H42B 106.7 109.5
C6X C7X O8X 119.0 120.0
C6X C7X O9X 117.8 120.0
H42A C6X H42B 106.3 109.4
O8X C7X O9X 123.2 120.0
C5' C4' HC4' 117.8 119.9
C4' C5' C6' 117.1 119.8
C4' C5' C1B 118.6 120.0
C6' C5' C1B 124.3 120.1
C5' C6' O6' 119.4 120.2
C5' C1B C2B 122.2 120.2
C5' C1B C6B 122.2 120.1
C2B C1B C6B 115.6 119.7
C1B C2B C3B 123.0 119.7
C1B C2B N2B 125.0 120.1
C1B C6B C5B 121.8 119.9
C1B C6B H6B 119.5 120.1
C3B C2B N2B 112.1 120.2
C2B C3B C4B 120.0 120.1
C2B C3B H3B 120.6 119.9
C2B N2B HN2A 115.1 120.0
C2B N2B HN2B 114.1 120.0
C4B C3B H3B 119.4 120.0
C3B C4B C5B 119.5 120.3
C3B C4B H4B 120.0 119.8
C5B C4B H4B 120.6 119.8
C4B C5B C6B 120.1 120.2
C4B C5B H5B 119.6 119.9
C6B C5B H5B 120.2 119.9
C5B C6B H6B 118.7 120.0
HN2A N2B HN2B 115.8 120.0

Torsion Angles for 607

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 C1 C2 C7 180.0 180.3
C2 C1 C6 C5 359.9 359.5
C2 C1 C6 HC6 179.9 179.7
C2 C1 C7 N1 170.7 180.0
C2 C1 C7 N2 350.6 360.0
C3 C2 C1 HC2 179.8 180.0
C1 C2 C3 C4 0.1 360.0
C1 C2 C3 HC3 180.1 180.0
C2 C1 C6 C7 180.0 179.7
C6 C1 C2 C3 359.9 0.3
C6 C1 C2 HC2 180.1 180.3
C6 C1 C7 N1 350.7 359.7
C6 C1 C7 N2 170.6 179.7
C4 C5 C6 C1 0.2 0.5
C1 C6 C5 N4 180.3 180.2
C5 C6 C1 HC6 180.0 179.8
C2 C1 C7 C6 180.0 180.3
C7 C1 C2 C3 179.9 180.0
C7 C1 C2 HC2 0.2 0.0
C7 C1 C6 C5 179.9 179.8
C7 C1 C6 HC6 359.9 360.0
N1 C7 C1 N2 180.1 180.0
C1 C7 N1 HH11 359.9 180.1
C1 C7 N1 HH12 177.8 359.9
C1 C7 N2 HH21 359.5 0.0
C1 C7 N2 HH22 176.3 179.7
C3 C2 C1 C6 359.9 0.3
C3 C2 C1 C7 179.9 180.0
C1 C2 C3 HC2 180.2 180.0
C4 C3 C2 HC3 179.9 180.0
C2 C3 C4 C5 0.1 0.0
C2 C3 C4 N3 179.7 180.0
HC2 C2 C1 C6 180.1 180.3
HC2 C2 C1 C7 0.2 0.0
C1 C2 HC2 C3 179.8 180.0
HC2 C2 C3 C4 179.9 180.0
HC2 C2 C3 HC3 359.9 360.0
C4 C3 C2 HC2 179.9 180.0
C2 C3 C4 HC3 180.1 180.0
C5 C4 C3 N3 180.4 180.0
C3 C4 C5 C6 359.7 359.8
C3 C4 C5 N4 179.7 180.0
C3 C4 N3 C8 180.3 180.0
C3 C4 N3 HN3 1.6 360.0
HC3 C3 C2 HC2 359.9 360.0
C2 C3 HC3 C4 179.9 180.0
HC3 C3 C4 C5 180.0 180.0
HC3 C3 C4 N3 359.6 0.0
C1 C6 C5 C4 0.2 0.5
C5 C4 C3 HC3 180.0 180.0
C3 C4 C5 N3 179.7 180.0
C5 C4 N3 C8 360.0 0.0
C5 C4 N3 HN3 181.2 180.0
C6 C5 C4 N4 180.0 179.8
C4 C5 C6 HC6 180.3 180.3
C4 C5 N4 C8 360.0 0.1
N3 C4 C3 HC3 359.6 0.0
C3 C4 N3 C5 180.4 180.0
N3 C4 C5 C6 180.1 179.7
N3 C4 C5 N4 0.0 360.0
C8 N3 C4 HN3 178.7 180.0
C4 N3 C8 N4 0.0 0.0
C4 N3 C8 C1' 180.0 179.9
C5 C6 C1 C7 179.9 179.8
C1 C6 C5 HC6 180.0 180.2
C6 C5 C4 N3 180.1 179.7
C4 C5 C6 N4 180.0 180.3
C6 C5 N4 C8 180.0 180.3
N4 C5 C4 N3 0.0 360.0
C4 C5 N4 C6 180.0 179.7
N4 C5 C6 HC6 0.3 360.0
N3 C8 N4 C5 360.0 359.9
C5 N4 C8 C1' 180.0 180.1
HC6 C6 C1 C7 359.9 360.0
C1 C6 HC6 C5 180.0 179.8
HC6 C6 C5 N4 0.3 360.0
C1 C7 N1 N2 179.9 180.0
N1 C7 N2 HH21 179.4 180.0
N1 C7 N2 HH22 356.2 359.7
HH11 N1 C7 HH12 182.1 180.1
C1 C7 N2 N1 180.1 180.0
N2 C7 N1 HH11 180.0 0.1
N2 C7 N1 HH12 357.9 180.0
HH21 N2 C7 HH22 183.2 180.3
HH11 N1 C7 N2 180.0 0.1
C7 N1 HH11 HH12 178.2 179.9
HH12 N1 C7 N2 357.9 180.0
C7 N1 HH12 HH11 182.0 180.1
C7 N2 HH21 HH22 176.9 179.7
C7 N2 HH22 HH21 183.1 180.3
C4 N3 C8 HN3 181.2 180.0
C5 N4 C8 N3 360.0 359.9
N4 C8 N3 C1' 180.0 180.1
N3 C8 C1' C2' 187.1 140.3
N3 C8 C1' C6' 6.9 320.1
C4 N3 HN3 C8 178.5 180.0
HN3 N3 C8 N4 178.8 180.0
HN3 N3 C8 C1' 358.8 359.9
N4 C8 N3 HN3 178.8 180.0
N3 C8 N4 C1' 180.0 179.9
N4 C8 C1' C2' 7.1 320.2
N4 C8 C1' C6' 186.8 139.9
C1' C8 N3 HN3 358.8 359.9
N3 C8 C1' N4 180.0 180.1
C2' C1' C8 C6' 180.3 180.3
C8 C1' C2' C3' 180.2 180.0
C8 C1' C2' HC2' 359.7 360.0
C8 C1' C6' C5' 179.9 179.7
C8 C1' C6' O6' 0.5 0.2
C8 C1' C2' C6' 179.8 179.7
C2' C1' C6' C5' 359.7 359.5
C2' C1' C6' O6' 180.2 179.9
C3' C2' C1' HC2' 180.5 180.1
C1' C2' C3' CVX 178.7 180.0
C1' C2' C3' C4' 359.5 360.0
C8 C1' C6' C2' 180.2 180.3
C6' C1' C2' C3' 0.5 0.3
C6' C1' C2' HC2' 180.0 180.2
C4' C5' C6' C1' 0.1 0.5
C1' C6' C5' C1B 179.3 180.3
C5' C6' C1' O6' 179.5 179.5
C3' C2' C1' C6' 0.5 0.3
C1' C2' C3' HC2' 179.5 179.9
CVX C3' C2' C4' 179.2 180.0
C2' C3' CVX CWX 276.6 60.0
C2' C3' CVX C6X 155.9 300.0
C2' C3' CVX H31B 32.8 179.9
C2' C3' C4' C5' 0.3 0.0
C2' C3' C4' HC4' 179.8 180.0
HC2' C2' C1' C6' 180.0 180.2
C1' C2' HC2' C3' 180.5 180.1
HC2' C2' C3' CVX 359.2 0.1
HC2' C2' C3' C4' 180.0 180.0
CVX C3' C2' HC2' 359.2 0.1
C2' C3' CVX C4' 180.8 180.0
CVX C3' C4' C5' 181.1 180.0
CVX C3' C4' HC4' 0.6 359.9
CWX CVX C3' C6X 120.7 120.0
CWX CVX C3' H31B 243.8 240.0
C3' CVX CWX OXX 97.7 360.0
C3' CVX CWX OYX 278.4 180.0
C6X CVX C3' H31B 123.1 120.0
C3' CVX C6X C7X 222.5 185.0
C3' CVX C6X H42A 344.4 305.1
C3' CVX C6X H42B 101.5 65.0
C4' C3' C2' HC2' 180.0 180.0
C2' C3' C4' CVX 179.2 180.0
C4' C3' CVX CWX 95.8 240.0
C4' C3' CVX C6X 335.1 120.0
C4' C3' CVX H31B 212.0 360.0
C5' C4' C3' HC4' 180.5 180.1
C3' C4' C5' C6' 359.9 359.7
C3' C4' C5' C1B 180.7 179.9
CWX CVX C3' C4' 95.8 240.0
C3' CVX CWX C6X 236.8 240.0
C3' CVX CWX H31B 115.8 120.0
C6X CVX CWX H31B 239.0 240.0
CWX CVX C6X C7X 105.2 65.0
CWX CVX C6X H42A 227.2 185.0
CWX CVX C6X H42B 344.3 304.9
OXX CWX CVX OYX 179.3 180.0
C6X CVX C3' C4' 335.1 120.0
C3' CVX C6X CWX 117.3 120.0
C3' CVX C6X H31B 237.7 240.0
CWX CVX C6X H31B 120.5 119.9
C6X CVX CWX OXX 220.9 120.0
C6X CVX CWX OYX 41.6 300.1
C7X C6X CVX H42A 238.0 239.9
C7X C6X CVX H42B 120.9 120.0
CVX C6X C7X O8X 333.5 360.0
CVX C6X C7X O9X 153.8 180.0
H42A C6X CVX H42B 242.9 240.1
H31B CVX C3' C4' 212.0 360.0
C3' CVX H31B CWX 246.9 240.0
C3' CVX H31B C6X 125.6 120.0
CWX CVX H31B C6X 238.7 240.0
H31B CVX CWX OXX 341.9 240.0
H31B CVX CWX OYX 162.6 60.0
H31B CVX C6X C7X 344.7 305.0
H31B CVX C6X H42A 106.7 65.1
H31B CVX C6X H42B 223.8 185.0
OXX CWX CVX C6X 220.9 120.0
OXX CWX CVX H31B 341.9 240.0
CVX CWX OXX OYX 180.7 180.0
OYX CWX CVX C6X 41.6 300.1
OYX CWX CVX H31B 162.6 60.0
CVX CWX OYX OXX 179.3 180.0
C7X C6X CVX H31B 344.7 305.0
CVX C6X C7X H42A 123.3 120.0
CVX C6X C7X H42B 237.0 240.0
H42A C6X C7X H42B 113.8 120.0
O8X C7X C6X O9X 179.7 180.0
H42A C6X CVX H31B 106.7 65.1
CVX C6X H42A C7X 233.6 240.0
CVX C6X H42A H42B 119.6 119.9
C7X C6X H42A H42B 246.0 240.0
H42A C6X C7X O8X 210.2 240.0
H42A C6X C7X O9X 30.5 60.0
H42B C6X CVX H31B 223.8 185.0
CVX C6X H42B C7X 125.9 120.0
CVX C6X H42B H42A 240.6 240.1
C7X C6X H42B H42A 114.7 120.1
H42B C6X C7X O8X 96.5 120.0
H42B C6X C7X O9X 276.8 300.0
O8X C7X C6X H42A 210.2 240.0
O8X C7X C6X H42B 96.5 120.0
C6X C7X O8X O9X 180.3 180.0
O9X C7X C6X H42A 30.5 60.0
O9X C7X C6X H42B 276.8 300.0
C6X C7X O9X O8X 179.7 180.0
C1' C6' C5' C4' 0.1 0.5
C3' C4' C5' HC4' 179.5 179.9
C6' C5' C4' C1B 179.2 179.8
C4' C5' C6' O6' 179.6 180.0
C4' C5' C1B C2B 113.3 244.7
C4' C5' C1B C6B 294.9 65.1
C3' C4' HC4' C5' 180.5 180.1
HC4' C4' C5' C6' 180.4 179.8
HC4' C4' C5' C1B 1.1 360.0
C1' C6' C5' O6' 180.5 180.5
C6' C5' C4' HC4' 180.4 179.8
C4' C5' C6' C1B 180.8 180.2
C6' C5' C1B C2B 294.2 64.9
C6' C5' C1B C6B 115.8 245.3
C1B C5' C4' HC4' 1.1 360.0
C4' C5' C1B C6' 179.2 179.8
C1B C5' C6' O6' 358.8 359.9
C2B C1B C5' C6B 178.4 179.6
C5' C1B C2B C3B 182.0 179.7
C5' C1B C2B N2B 3.3 0.4
C5' C1B C6B C5B 178.1 180.0
C5' C1B C6B H6B 358.2 359.9
C1' C6' O6' C5' 179.5 179.5
O6' C6' C5' C1B 358.8 359.9
C5' C1B C2B C6B 181.5 180.4
C2B C1B C6B C5B 359.6 0.3
C2B C1B C6B H6B 179.7 180.3
C3B C2B C1B N2B 178.8 179.4
C1B C2B C3B C4B 359.6 0.6
C1B C2B C3B H3B 179.6 180.3
C1B C2B N2B HN2A 166.0 179.4
C1B C2B N2B HN2B 28.5 359.4
C5' C1B C6B C2B 178.5 179.6
C6B C1B C2B C3B 0.5 359.4
C6B C1B C2B N2B 181.8 180.0
C4B C5B C6B C1B 0.0 359.9
C1B C6B C5B H5B 177.7 180.0
C5B C6B C1B H6B 179.9 180.1
C3B C2B C1B C6B 0.5 359.4
C1B C2B C3B N2B 181.1 180.6
C3B C2B N2B HN2A 347.1 0.0
C3B C2B N2B HN2B 209.6 180.0
C4B C3B C2B H3B 180.0 180.3
C2B C3B C4B C5B 360.0 359.7
C2B C3B C4B H4B 180.1 179.7
N2B C2B C1B C6B 181.8 180.0
C1B C2B N2B C3B 178.9 179.4
N2B C2B C3B C4B 178.6 180.0
N2B C2B C3B H3B 358.5 359.7
HN2A N2B C2B HN2B 137.5 180.1
C4B C3B C2B N2B 178.6 180.0
C2B C3B C4B H3B 180.0 179.7
C5B C4B C3B H4B 179.9 180.0
C3B C4B C5B C6B 0.2 0.0
C3B C4B C5B H5B 182.5 180.0
H3B C3B C2B N2B 358.5 359.7
C2B C3B H3B C4B 180.0 180.3
H3B C3B C4B C5B 180.0 180.0
H3B C3B C4B H4B 0.1 359.9
C1B C6B C5B C4B 0.0 359.9
C5B C4B C3B H3B 180.0 180.0
C3B C4B C5B H4B 180.1 180.0
C6B C5B C4B H5B 177.7 180.0
C4B C5B C6B H6B 180.0 180.0
H4B C4B C3B H3B 0.1 359.9
C3B C4B H4B C5B 179.9 180.0
H4B C4B C5B C6B 180.1 180.1
H4B C4B C5B H5B 2.4 0.0
C1B C6B C5B H6B 180.1 179.9
C6B C5B C4B H4B 180.1 180.1
C4B C5B C6B H5B 182.3 180.0
H5B C5B C4B H4B 2.4 0.0
C4B C5B H5B C6B 177.7 180.0
H5B C5B C6B H6B 357.7 0.1
C1B C6B H6B C5B 179.9 180.1
H6B C6B C5B H5B 357.7 0.1
C2B N2B HN2A HN2B 223.3 179.9
C2B N2B HN2B HN2A 137.2 180.1