PDB Chemical Component 5YL

Ideal Model

Chemical Description

Name 5-(6-D-RIBITYLAMINO-2,4(1H,3H)PYRIMIDINEDIONE-5-YL) PENTYL-1-PHOSPHONIC ACID
Formula C14 H26 N3 O9 P
Formal charge 0
Molecular weight 411.345 g/mol
Component type NON-POLYMER

Chemical features

Atom count 53
Chiral atom count 3
Chiral atoms C9 C10 C11
Bond count 53
Aromatic bond count 6

Chemical Identifiers

Systematic name (ACDLabs) 1-deoxy-1-{[2,6-dioxo-5-(5-phosphonopentyl)-1,2,3,6-tetrahydropyrimidin-4-yl]amino}-D-ribitol
Systematic name (OpenEye OEToolkits) 5-[2,4-dioxo-6-[[(2S,3S,4R)-2,3,4,5-tetrahydroxypentyl]amino]-1H-pyrimidin-5-yl]pentylphosphonic acid

Chemical Descriptors

Stereo SMILES (CACTVS) OC[C@@H](O)[C@@H](O)[C@@H](O)CNC1=C(CCCCC[P](O)(O)=O)C(=O)NC(=O)N1
SMILES (CACTVS) OC[CH](O)[CH](O)[CH](O)CNC1=C(CCCCC[P](O)(O)=O)C(=O)NC(=O)N1
Stereo SMILES (OpenEye) C(CCC1=C(NC(=O)NC1=O)NC[C@@H]([C@@H]([C@@H](CO)O)O)O)CCP(=O)(O)O
InChI descriptor InChI=1S/C14H26N3O9P/c18-7-10(20)11(21)9(19)6-15-12-8(13(22)17-14(23)16-12)4-2-1-3-5-27(24,25)26/h9-11,18-21H,1-7H2,(H2,24,25,26)(H3,15,16,17,22,23)/t9-,10+,11-/m0/s1
InChIKey descriptor BMATWAHJJFXMFA-AXFHLTTASA-N

Status Information

Last modified 2011-06-04
Created 2003-02-04
Release status REL
Model PDB code 1NQW
Processing site RCSB