PDB Chemical Component 5XE
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5XE
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| BR |
CAV |
1.849 |
1.891 |
| CAV |
CAW |
1.393 |
1.383 |
| CAV |
CAU |
1.400 |
1.384 |
| CAW |
CAX |
1.392 |
1.383 |
| CAU |
CAT |
1.407 |
1.381 |
| CAX |
CAR |
1.394 |
1.382 |
| CAT |
CAR |
1.417 |
1.383 |
| CAT |
CAZ |
1.422 |
1.507 |
| CAR |
SAA |
1.742 |
1.762 |
| OAC |
SAA |
1.503 |
1.421 |
| SAA |
OAD |
1.495 |
1.420 |
| SAA |
NAB |
1.612 |
1.656 |
| NAB |
CAE |
1.385 |
1.401 |
| CAE |
CAF |
1.415 |
1.385 |
| CAE |
CAJ |
1.418 |
1.395 |
| OAK |
CAJ |
1.384 |
1.360 |
| OAK |
CAS |
1.422 |
1.429 |
| CAF |
CAG |
1.364 |
1.388 |
| CAJ |
CAI |
1.406 |
1.384 |
| CAG |
NAL |
1.358 |
1.395 |
| CAG |
CAH |
1.372 |
1.395 |
| CAP |
NAL |
1.483 |
1.465 |
| CAI |
CAH |
1.356 |
1.387 |
| NAL |
CAM |
1.341 |
1.345 |
| CAH |
NAN |
1.349 |
1.396 |
| NAN |
CAM |
1.337 |
1.346 |
| NAN |
CAQ |
1.473 |
1.465 |
| CAM |
OAO |
1.243 |
1.218 |
| CAZ |
H1 |
1.100 |
1.090 |
| CAZ |
H2 |
1.100 |
1.090 |
| CAZ |
H3 |
1.100 |
1.090 |
| CAU |
H4 |
1.080 |
1.080 |
| CAW |
H5 |
1.080 |
1.079 |
| CAX |
H6 |
1.080 |
1.080 |
| NAB |
H7 |
1.000 |
0.970 |
| CAF |
H8 |
1.080 |
1.080 |
| CAP |
H9 |
1.100 |
1.090 |
| CAP |
H10 |
1.101 |
1.089 |
| CAP |
H11 |
1.100 |
1.091 |
| CAQ |
H12 |
1.100 |
1.090 |
| CAQ |
H13 |
1.100 |
1.090 |
| CAQ |
H14 |
1.100 |
1.090 |
| CAI |
H15 |
1.080 |
1.080 |
| CAS |
H16 |
1.100 |
1.090 |
| CAS |
H17 |
1.100 |
1.091 |
| CAS |
H18 |
1.100 |
1.090 |
Bond Angles for 5XE
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| BR |
CAV |
CAW |
120.8 |
120.0 |
| CAV |
CAW |
CAX |
120.5 |
120.0 |
| CAV |
CAW |
H5 |
119.7 |
120.0 |
| CAV |
CAU |
H4 |
119.2 |
119.9 |
| CAW |
CAX |
CAR |
121.1 |
120.0 |
| CAX |
CAW |
H5 |
119.7 |
120.0 |
| CAW |
CAX |
H6 |
119.5 |
120.0 |
| CAU |
CAT |
CAR |
118.4 |
120.0 |
| CAT |
CAR |
CAX |
119.5 |
120.0 |
| CAX |
CAR |
SAA |
116.6 |
120.0 |
| CAR |
CAX |
H6 |
119.5 |
120.0 |
| CAT |
CAR |
SAA |
123.9 |
120.0 |
| CAT |
CAZ |
H1 |
109.5 |
109.5 |
| CAT |
CAZ |
H2 |
109.5 |
109.5 |
| CAT |
CAZ |
H3 |
109.5 |
109.5 |
| CAR |
SAA |
OAD |
110.0 |
106.4 |
| CAR |
SAA |
NAB |
107.0 |
107.2 |
| OAC |
SAA |
OAD |
112.6 |
123.2 |
| OAC |
SAA |
NAB |
109.8 |
106.4 |
| OAD |
SAA |
NAB |
110.0 |
106.4 |
| SAA |
NAB |
CAE |
127.6 |
120.0 |
| SAA |
NAB |
H7 |
104.7 |
120.0 |
| NAB |
CAE |
CAF |
127.1 |
119.9 |
| NAB |
CAE |
CAJ |
115.2 |
120.0 |
| CAE |
NAB |
H7 |
104.8 |
120.0 |
| CAF |
CAE |
CAJ |
117.4 |
120.1 |
| CAE |
CAF |
CAG |
120.4 |
119.9 |
| CAE |
CAF |
H8 |
119.8 |
120.1 |
| CAE |
CAJ |
CAI |
120.5 |
120.1 |
| OAK |
CAS |
H16 |
109.5 |
109.5 |
| OAK |
CAS |
H17 |
109.5 |
109.4 |
| OAK |
CAS |
H18 |
109.5 |
109.5 |
| CAF |
CAG |
NAL |
131.6 |
133.2 |
| CAF |
CAG |
CAH |
120.9 |
120.0 |
| CAG |
CAF |
H8 |
119.8 |
120.0 |
| CAJ |
CAI |
H15 |
120.4 |
120.0 |
| NAL |
CAG |
CAH |
107.4 |
106.8 |
| CAG |
NAL |
CAM |
107.8 |
108.4 |
| CAG |
CAH |
NAN |
107.3 |
106.7 |
| CAP |
NAL |
CAM |
125.7 |
125.8 |
| NAL |
CAM |
OAO |
126.6 |
125.2 |
| NAN |
CAQ |
H12 |
109.5 |
109.4 |
| NAN |
CAQ |
H13 |
109.5 |
109.5 |
| NAN |
CAQ |
H14 |
109.5 |
109.5 |
| H1 |
CAZ |
H2 |
109.4 |
109.5 |
| H1 |
CAZ |
H3 |
109.5 |
109.5 |
| H2 |
CAZ |
H3 |
109.5 |
109.4 |
| H9 |
CAP |
H10 |
109.5 |
109.5 |
| H9 |
CAP |
H11 |
109.5 |
109.4 |
| H10 |
CAP |
H11 |
109.5 |
109.5 |
| H12 |
CAQ |
H13 |
109.4 |
109.5 |
| H12 |
CAQ |
H14 |
109.5 |
109.5 |
| H13 |
CAQ |
H14 |
109.5 |
109.5 |
| H16 |
CAS |
H17 |
109.5 |
109.4 |
| H16 |
CAS |
H18 |
109.5 |
109.5 |
| H17 |
CAS |
H18 |
109.4 |
109.5 |
Torsion Angles for 5XE
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| BR |
CAV |
CAW |
CAX |
181.4 |
180.0 |
| BR |
CAV |
CAW |
H5 |
1.4 |
360.0 |
| BR |
CAV |
CAU |
H4 |
359.1 |
0.1 |
| CAW |
CAV |
CAU |
H4 |
179.9 |
180.1 |
| CAV |
CAW |
CAX |
CAR |
359.6 |
360.0 |
| CAX |
CAW |
CAV |
H5 |
180.0 |
180.0 |
| CAV |
CAW |
CAX |
H6 |
179.6 |
180.0 |
| CAV |
CAU |
CAT |
CAR |
359.3 |
0.0 |
| CAV |
CAW |
CAX |
H5 |
180.0 |
180.0 |
| CAT |
CAR |
CAX |
CAW |
359.6 |
0.0 |
| CAW |
CAX |
CAR |
SAA |
180.4 |
180.3 |
| CAR |
CAX |
CAW |
H6 |
180.0 |
180.0 |
| CAU |
CAT |
CAR |
CAX |
1.0 |
360.0 |
| CAU |
CAT |
CAR |
SAA |
180.1 |
179.7 |
| CAU |
CAT |
CAZ |
H1 |
90.0 |
264.8 |
| CAU |
CAT |
CAZ |
H2 |
210.0 |
24.8 |
| CAU |
CAT |
CAZ |
H3 |
330.0 |
144.8 |
| CAR |
CAX |
CAW |
H5 |
179.6 |
180.0 |
| CAW |
CAX |
CAR |
H6 |
180.0 |
180.0 |
| CAT |
CAR |
CAX |
SAA |
179.1 |
179.7 |
| CAX |
CAR |
SAA |
OAD |
349.3 |
130.8 |
| CAX |
CAR |
SAA |
NAB |
108.9 |
244.4 |
| CAW |
CAX |
CAR |
CAT |
359.6 |
0.0 |
| CAX |
CAR |
CAT |
SAA |
180.9 |
180.3 |
| CAT |
CAR |
CAX |
H6 |
179.6 |
180.0 |
| CAR |
CAT |
CAZ |
H1 |
270.0 |
84.5 |
| CAR |
CAT |
CAZ |
H2 |
30.0 |
204.5 |
| CAR |
CAT |
CAZ |
H3 |
150.0 |
324.5 |
| CAT |
CAR |
SAA |
OAD |
170.2 |
311.1 |
| CAT |
CAR |
SAA |
NAB |
289.7 |
64.7 |
| H1 |
CAZ |
CAT |
H2 |
240.0 |
240.0 |
| H1 |
CAZ |
CAT |
H3 |
120.0 |
120.0 |
| H2 |
CAZ |
CAT |
H3 |
240.0 |
240.1 |
| CAT |
CAR |
SAA |
CAX |
180.9 |
180.3 |
| SAA |
CAR |
CAX |
H6 |
0.4 |
0.3 |
| OAC |
SAA |
CAR |
OAD |
237.2 |
227.0 |
| OAC |
SAA |
CAR |
NAB |
117.7 |
113.5 |
| OAD |
SAA |
CAR |
NAB |
240.5 |
246.4 |
| CAR |
SAA |
NAB |
CAE |
286.0 |
60.0 |
| CAR |
SAA |
NAB |
H7 |
48.4 |
240.0 |
| CAR |
SAA |
OAC |
OAD |
121.2 |
123.0 |
| CAR |
SAA |
OAC |
NAB |
244.1 |
246.0 |
| OAD |
SAA |
OAC |
NAB |
122.9 |
123.0 |
| OAC |
SAA |
NAB |
CAE |
169.9 |
306.5 |
| OAC |
SAA |
NAB |
H7 |
292.3 |
126.5 |
| CAR |
SAA |
OAD |
NAB |
117.6 |
114.1 |
| OAC |
SAA |
OAD |
NAB |
237.2 |
237.1 |
| OAD |
SAA |
NAB |
CAE |
45.5 |
173.6 |
| OAD |
SAA |
NAB |
H7 |
167.9 |
353.6 |
| CAR |
SAA |
NAB |
OAD |
240.5 |
246.4 |
| OAC |
SAA |
NAB |
OAD |
124.4 |
132.9 |
| SAA |
NAB |
CAE |
CAF |
312.0 |
35.5 |
| SAA |
NAB |
CAE |
CAJ |
138.5 |
215.2 |
| CAE |
NAB |
SAA |
H7 |
237.6 |
180.0 |
| SAA |
NAB |
CAE |
H7 |
122.4 |
180.0 |
| CAF |
CAE |
NAB |
CAJ |
173.5 |
180.3 |
| NAB |
CAE |
CAF |
CAG |
184.0 |
180.0 |
| NAB |
CAE |
CAF |
H8 |
4.0 |
360.0 |
| NAB |
CAE |
CAJ |
CAI |
176.5 |
179.7 |
| NAB |
CAE |
CAF |
CAJ |
186.6 |
179.7 |
| CAF |
CAE |
NAB |
H7 |
189.6 |
215.5 |
| CAF |
CAE |
CAJ |
CAI |
2.3 |
359.5 |
| CAE |
CAF |
CAG |
NAL |
178.8 |
180.0 |
| CAE |
CAF |
CAG |
CAH |
2.0 |
360.0 |
| CAG |
CAF |
CAE |
H8 |
180.0 |
180.0 |
| NAB |
CAE |
CAJ |
CAF |
174.2 |
180.3 |
| CAJ |
CAE |
NAB |
H7 |
16.1 |
35.3 |
| CAJ |
CAE |
CAF |
CAG |
357.4 |
0.3 |
| CAJ |
CAE |
CAF |
H8 |
177.3 |
180.2 |
| CAE |
CAJ |
CAI |
H15 |
178.8 |
180.3 |
| OAK |
CAJ |
CAI |
H15 |
1.5 |
0.0 |
| H16 |
CAS |
OAK |
H17 |
240.0 |
240.0 |
| H16 |
CAS |
OAK |
H18 |
120.0 |
120.1 |
| H17 |
CAS |
OAK |
H18 |
240.1 |
240.0 |
| CAG |
CAF |
CAE |
CAJ |
357.4 |
0.3 |
| CAE |
CAF |
CAG |
H8 |
180.0 |
180.0 |
| NAL |
CAG |
CAF |
CAH |
176.8 |
180.0 |
| CAF |
CAG |
NAL |
CAM |
183.8 |
180.1 |
| CAF |
CAG |
CAH |
NAN |
177.8 |
179.9 |
| CAF |
CAG |
NAL |
CAH |
182.9 |
180.0 |
| NAL |
CAG |
CAF |
H8 |
358.8 |
0.0 |
| NAL |
CAG |
CAH |
NAN |
0.3 |
360.0 |
| CAP |
NAL |
CAG |
CAM |
179.5 |
180.0 |
| CAG |
NAL |
CAM |
OAO |
177.0 |
180.0 |
| CAF |
CAG |
CAH |
NAL |
177.5 |
180.0 |
| CAH |
CAG |
CAF |
H8 |
182.0 |
180.0 |
| CAH |
CAG |
NAL |
CAM |
0.9 |
0.1 |
| CAP |
NAL |
CAG |
CAH |
180.4 |
180.0 |
| CAG |
NAL |
CAP |
CAM |
180.6 |
180.0 |
| CAP |
NAL |
CAM |
OAO |
357.5 |
0.1 |
| CAE |
CAJ |
CAI |
CAH |
358.8 |
0.6 |
| CAM |
NAL |
CAG |
CAH |
0.9 |
0.1 |
| CAH |
NAN |
CAQ |
H12 |
180.0 |
180.0 |
| CAH |
NAN |
CAQ |
H13 |
300.0 |
300.0 |
| CAH |
NAN |
CAQ |
H14 |
60.0 |
60.0 |
| CAG |
CAH |
NAN |
CAM |
358.6 |
0.0 |
| CAG |
CAH |
NAN |
CAQ |
183.0 |
180.1 |
| H12 |
CAQ |
NAN |
H13 |
240.0 |
240.0 |
| H12 |
CAQ |
NAN |
H14 |
120.0 |
120.0 |
| H13 |
CAQ |
NAN |
H14 |
240.0 |
240.0 |
| CAT |
CAZ |
H1 |
H2 |
120.0 |
120.0 |
| CAT |
CAZ |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
CAZ |
H1 |
H3 |
120.0 |
120.0 |
| CAT |
CAZ |
H2 |
H1 |
240.0 |
240.0 |
| CAT |
CAZ |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
CAZ |
H2 |
H3 |
240.0 |
240.0 |
| CAT |
CAZ |
H3 |
H1 |
120.0 |
120.0 |
| CAT |
CAZ |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
CAZ |
H3 |
H2 |
119.9 |
120.0 |
| H4 |
CAU |
CAT |
CAR |
179.3 |
179.9 |
| CAV |
CAW |
H5 |
CAX |
180.0 |
180.0 |
| H5 |
CAW |
CAX |
CAR |
179.6 |
180.0 |
| H5 |
CAW |
CAX |
H6 |
359.6 |
0.0 |
| CAW |
CAX |
H6 |
CAR |
180.0 |
180.0 |
| H6 |
CAX |
CAW |
H5 |
359.6 |
0.0 |
| H6 |
CAX |
CAR |
SAA |
0.4 |
0.3 |
| SAA |
NAB |
H7 |
CAE |
223.8 |
180.0 |
| H7 |
NAB |
CAE |
CAF |
189.6 |
215.5 |
| H7 |
NAB |
CAE |
CAJ |
16.1 |
35.3 |
| H8 |
CAF |
CAE |
CAJ |
177.3 |
180.2 |
| CAE |
CAF |
H8 |
CAG |
180.0 |
180.0 |
| H8 |
CAF |
CAG |
NAL |
358.8 |
0.0 |
| H8 |
CAF |
CAG |
CAH |
182.0 |
180.0 |
| H9 |
CAP |
NAL |
CAM |
359.4 |
269.9 |
| H10 |
CAP |
H9 |
H11 |
120.0 |
120.0 |
| H10 |
CAP |
NAL |
CAM |
119.4 |
30.0 |
| H9 |
CAP |
H10 |
H11 |
240.0 |
240.0 |
| H11 |
CAP |
NAL |
CAM |
239.4 |
150.0 |
| H9 |
CAP |
H11 |
H10 |
120.0 |
120.0 |
| NAN |
CAQ |
H12 |
H13 |
120.0 |
120.0 |
| NAN |
CAQ |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
CAQ |
H12 |
H14 |
120.0 |
120.0 |
| NAN |
CAQ |
H13 |
H12 |
240.0 |
240.0 |
| NAN |
CAQ |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
CAQ |
H13 |
H14 |
240.0 |
240.0 |
| NAN |
CAQ |
H14 |
H12 |
120.0 |
120.0 |
| NAN |
CAQ |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
CAQ |
H14 |
H13 |
120.0 |
120.0 |
| OAK |
CAS |
H16 |
H17 |
120.0 |
120.0 |
| OAK |
CAS |
H16 |
H18 |
240.0 |
240.0 |
| H17 |
CAS |
H16 |
H18 |
120.0 |
120.0 |
| OAK |
CAS |
H17 |
H16 |
240.0 |
240.0 |
| OAK |
CAS |
H17 |
H18 |
120.0 |
120.0 |
| H16 |
CAS |
H17 |
H18 |
240.0 |
240.0 |
| OAK |
CAS |
H18 |
H16 |
120.0 |
120.1 |
| OAK |
CAS |
H18 |
H17 |
240.0 |
240.0 |
| H16 |
CAS |
H18 |
H17 |
120.0 |
120.0 |