Atom Nomenclature for 5WQ

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5WQ

Atom Name (V3) Atom Name (V2)
CBC C1
CBA C2
NCE N1
CAK C3
CBB C4
CBD C5
NCF N2
NBE N3
CAW C6
CBO C7
CAX C8
CBU C9
CBT C10
CBM C11
OAM O1
OBG O2
CAS C12
CAV C13
CCA C14
OAZ O3
CAC C15
CBY C16
CAI C17
CCD C18
OBI O4
CBJ C19
CAD C20
OAA O5
CBZ C21
CAJ C22
CCC C23
OAQ O6
CBX C24
CAH C25
CCB C26
OAP O7
CBW C27
CAG C28
CAU C29
CAR C30
CAT C31
CBK C32
CAE C33
CBL C34
OAL O8
NBF N4
CBR C35
CBQ C36
OAO O9
CBV C37
CBP C38
OAN O10
CBN C39
CAF C40
CBS C41
OBH O11
CAY C42
CAB C43
H1 H1
H2 H2
H3 H3
H4 H4
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H40 H40
H41 H41
H42 H42
H43 H43
H44 H44
H45 H45
H46 H46
H47 H47
H48 H48
H49 H49
H50 H50
H51 H51
H52 H52
H53 H53
H54 H54
H55 H55
H56 H56
H57 H57
H58 H58
H59 H59
H60 H60
H61 H61
H62 H62
H63 H63
H64 H64
H65 H65