PDB Chemical Component 5V2

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5V2

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C01 N05 1.464 1.465
N05 C06 1.349 1.360
N05 C29 1.384 1.342
C06 C08 1.347 1.358
C08 C09 1.483 1.483
C08 C23 1.469 1.468
C09 C10 1.393 1.394
C09 C17 1.383 1.394
C10 C12 1.385 1.379
C12 C14 1.377 1.383
C14 C16 1.387 1.384
C16 C17 1.389 1.380
C16 C19 1.487 1.506
C19 F20 1.350 1.400
C19 F21 1.296 1.399
C19 F22 1.348 1.399
C23 S24 1.730 1.757
C23 C28 1.385 1.396
S24 C25 1.705 1.755
C25 C26 1.342 1.339
C25 C31 1.479 1.472
C26 C28 1.408 1.398
C28 C29 1.413 1.474
C29 O30 1.271 1.219
C31 N32 1.223 1.306
C31 N34 1.369 1.381
N34 C36 1.438 1.465
C36 C38 1.510 1.525
C36 C50 1.522 1.526
C38 C41 1.504 1.531
C41 S44 1.754 1.817
S44 O45 1.435 1.421
S44 O46 1.435 1.422
S44 C47 1.764 1.817
C47 C50 1.528 1.530
C01 H011 1.100 1.090
C01 H012 1.100 1.090
C01 H013 1.101 1.090
C06 H06 1.080 1.080
C10 H10 1.080 1.080
C17 H17 1.080 1.080
C12 H12 1.080 1.080
C14 H14 1.080 1.080
C26 H26 1.080 1.080
N32 H32 1.000 0.970
N34 H34 1.000 0.970
C36 H36 1.100 1.090
C38 H381 1.100 1.090
C38 H382 1.100 1.090
C50 H501 1.100 1.090
C50 H502 1.100 1.090
C41 H411 1.100 1.089
C41 H412 1.100 1.091
C47 H471 1.100 1.090
C47 H472 1.100 1.090

Bond Angles for 5V2

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C01 N05 C06 120.6 118.9
C01 N05 C29 117.2 118.9
N05 C01 H011 109.5 109.5
N05 C01 H012 109.5 109.5
N05 C01 H013 109.5 109.5
C06 N05 C29 122.2 122.3
N05 C06 C08 122.4 121.4
N05 C06 H06 118.8 119.3
N05 C29 C28 119.2 120.3
N05 C29 O30 121.7 119.9
C06 C08 C09 120.9 120.1
C06 C08 C23 117.0 119.7
C08 C06 H06 118.8 119.3
C09 C08 C23 121.9 120.2
C08 C09 C10 120.3 120.2
C08 C09 C17 120.3 120.1
C08 C23 S24 127.8 131.5
C08 C23 C28 120.9 118.8
C10 C09 C17 119.2 119.7
C09 C10 C12 120.5 119.9
C09 C10 H10 119.7 120.0
C09 C17 C16 120.5 119.9
C09 C17 H17 119.7 120.1
C10 C12 C14 119.8 120.1
C12 C10 H10 119.8 120.1
C10 C12 H12 120.1 120.0
C12 C14 C16 120.3 120.3
C14 C12 H12 120.1 119.9
C12 C14 H14 119.8 119.9
C14 C16 C17 119.7 120.1
C14 C16 C19 121.1 120.0
C16 C14 H14 119.8 119.8
C17 C16 C19 119.2 119.9
C16 C17 H17 119.8 120.1
C16 C19 F20 111.1 109.5
C16 C19 F21 112.6 109.5
C16 C19 F22 112.7 109.5
F20 C19 F21 107.6 109.5
F20 C19 F22 106.9 109.4
F21 C19 F22 105.6 109.5
S24 C23 C28 111.2 109.7
C23 S24 C25 91.8 91.5
C23 C28 C26 110.5 112.7
C23 C28 C29 118.2 117.5
S24 C25 C26 111.2 110.5
S24 C25 C31 121.3 124.8
C26 C25 C31 127.5 124.7
C25 C26 C28 115.2 115.6
C25 C26 H26 122.4 122.2
C25 C31 N32 118.1 120.0
C25 C31 N34 113.8 120.0
C26 C28 C29 131.3 129.8
C28 C26 H26 122.4 122.2
C28 C29 O30 119.0 119.9
N32 C31 N34 127.8 120.0
C31 N32 H32 112.0 120.0
C31 N34 C36 126.1 120.0
C31 N34 H34 116.9 120.0
N34 C36 C38 107.9 109.3
N34 C36 C50 110.0 109.3
C36 N34 H34 116.9 120.0
N34 C36 H36 109.7 109.2
C38 C36 C50 111.8 110.6
C36 C38 C41 110.1 110.0
C38 C36 H36 108.8 109.3
C36 C38 H381 109.3 109.4
C36 C38 H382 109.4 109.4
C36 C50 C47 115.8 110.0
C50 C36 H36 108.6 109.1
C36 C50 H501 107.8 109.4
C36 C50 H502 107.9 109.4
C38 C41 S44 108.7 109.0
C41 C38 H381 109.3 109.4
C41 C38 H382 109.3 109.4
C38 C41 H411 109.7 109.6
C38 C41 H412 109.6 109.5
C41 S44 O45 109.1 108.7
C41 S44 O46 109.1 108.7
C41 S44 C47 101.4 101.3
S44 C41 H411 109.6 109.6
S44 C41 H412 109.7 109.5
O45 S44 O46 117.7 119.3
O45 S44 C47 109.1 108.7
O46 S44 C47 109.1 108.7
S44 C47 C50 109.1 109.0
S44 C47 H471 109.6 109.6
S44 C47 H472 109.6 109.5
C47 C50 H501 107.9 109.4
C47 C50 H502 107.9 109.4
C50 C47 H471 109.6 109.5
C50 C47 H472 109.6 109.5
H011 C01 H012 109.4 109.5
H011 C01 H013 109.5 109.4
H012 C01 H013 109.5 109.5
H381 C38 H382 109.5 109.3
H501 C50 H502 109.5 109.3
H411 C41 H412 109.5 109.7
H471 C47 H472 109.5 109.6

Torsion Angles for 5V2

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C06 N05 C01 C29 182.5 180.2
C01 N05 C06 C08 178.8 180.1
C01 N05 C06 H06 358.8 360.0
C01 N05 C29 C28 179.6 179.8
C01 N05 C29 O30 3.1 360.0
H011 C01 N05 H012 240.0 240.0
H011 C01 N05 H013 120.0 120.0
H012 C01 N05 H013 240.0 240.0
C01 N05 C06 C29 177.4 179.7
C06 N05 C01 H011 180.0 90.0
C06 N05 C01 H012 300.0 210.0
C06 N05 C01 H013 60.0 330.0
C06 N05 C29 C28 357.1 359.5
C06 N05 C29 O30 180.6 179.7
N05 C06 C08 C09 176.6 180.0
N05 C06 C08 C23 0.8 359.9
C08 C06 N05 H06 180.0 180.1
C01 N05 C29 C06 182.5 180.3
C29 N05 C01 H011 357.6 269.7
C29 N05 C01 H012 117.5 29.7
C29 N05 C01 H013 237.5 149.8
C29 N05 C06 C08 1.4 0.3
C29 N05 C06 H06 181.4 180.2
C23 C28 C29 N05 2.1 0.4
C26 C28 C29 N05 183.2 180.3
C28 C29 N05 O30 176.5 179.8
C08 C06 N05 C29 1.4 0.3
N05 C06 C08 H06 180.0 179.9
C09 C08 C06 C23 175.8 180.1
C06 C08 C09 C10 329.5 114.9
C06 C08 C09 C17 155.4 294.7
C06 C08 C23 S24 181.0 180.0
C06 C08 C23 C28 358.5 0.0
C06 C08 C09 C23 184.5 179.9
C09 C08 C06 H06 356.6 0.1
C09 C08 C23 S24 5.3 359.9
C09 C08 C23 C28 182.8 179.9
C10 C09 C08 C17 174.1 180.2
C08 C09 C10 C12 182.9 180.0
C08 C09 C10 H10 2.9 360.0
C08 C09 C17 C16 176.0 179.7
C08 C09 C17 H17 356.0 360.0
C06 C08 C23 C09 175.7 180.1
C23 C08 C06 H06 180.8 180.0
C23 C08 C09 C10 145.0 295.0
C23 C08 C09 C17 330.9 114.8
S24 C23 C08 C28 182.5 180.0
C08 C23 S24 C25 180.0 180.0
C08 C23 C28 C26 179.1 179.9
C08 C23 C28 C29 0.0 359.8
C10 C09 C08 C23 145.0 295.0
C08 C09 C10 C17 185.8 179.8
C10 C09 C17 C16 1.8 359.5
C10 C09 C17 H17 181.8 179.8
C09 C10 C12 C14 2.1 0.0
C12 C10 C09 H10 180.0 180.0
C09 C10 C12 H12 182.0 180.0
C17 C09 C08 C23 330.9 114.8
C08 C09 C17 C10 174.2 180.2
C17 C09 C10 C12 357.1 0.2
C17 C09 C10 H10 177.0 180.2
C14 C16 C17 C09 0.2 0.6
C09 C17 C16 C19 181.3 180.3
C16 C17 C09 H17 180.0 179.7
C12 C10 C09 C17 357.1 0.2
C09 C10 C12 H10 180.0 180.0
C10 C12 C14 C16 360.0 0.0
C14 C12 C10 H12 180.0 180.0
C10 C12 C14 H14 180.0 180.0
C14 C12 C10 H10 182.1 180.0
C10 C12 C14 H12 180.0 180.0
C12 C14 C16 C17 358.9 359.7
C12 C14 C16 C19 177.7 180.0
C16 C14 C12 H14 180.0 180.0
C09 C17 C16 C14 0.2 0.6
C16 C14 C12 H12 180.0 180.0
C12 C14 C16 H14 180.0 180.0
C17 C16 C14 C19 181.2 179.7
C14 C16 C17 H17 180.1 180.3
C14 C16 C19 F20 246.6 360.0
C14 C16 C19 F21 125.7 120.0
C14 C16 C19 F22 6.4 240.0
C09 C17 C16 H17 180.0 180.3
C14 C16 C17 C19 178.8 180.3
C17 C16 C14 H14 178.9 179.7
C17 C16 C19 F20 65.4 180.3
C17 C16 C19 F21 304.6 300.3
C17 C16 C19 F22 185.2 60.3
C14 C16 C19 C17 181.2 179.7
C19 C16 C14 H14 357.7 360.0
C19 C16 C17 H17 1.3 0.0
F20 C19 C16 F21 120.8 240.0
F20 C19 C16 F22 240.1 120.0
F21 C19 C16 F22 119.3 240.0
C16 C19 F20 F21 236.3 120.0
C16 C19 F20 F22 123.3 240.0
F21 C19 F20 F22 247.0 120.0
C16 C19 F21 F20 122.8 240.0
C16 C19 F21 F22 236.7 120.0
F20 C19 F21 F22 113.9 240.0
C16 C19 F22 F20 237.7 120.0
C16 C19 F22 F21 123.3 240.0
F20 C19 F22 F21 245.6 120.0
C08 C23 S24 C28 177.7 180.0
S24 C23 C28 C26 357.0 360.0
S24 C23 C28 C29 177.9 179.8
C23 S24 C25 C26 359.1 0.0
C23 S24 C25 C31 179.1 180.0
N05 C29 C28 C23 2.1 0.4
C08 C23 C28 S24 182.1 180.0
C28 C23 S24 C25 2.3 0.0
C25 C26 C28 C23 2.4 0.0
C26 C28 C23 C29 179.1 180.2
C23 C28 C26 H26 182.4 180.0
C23 C28 C29 O30 178.7 180.2
C25 S24 C23 C28 2.3 0.0
C26 C25 S24 C31 180.0 180.0
S24 C25 C26 C28 359.3 360.0
S24 C25 C26 H26 179.3 180.0
S24 C25 C31 N32 329.8 180.0
S24 C25 C31 N34 155.7 360.0
C23 C28 C26 C25 2.4 0.0
S24 C25 C26 C31 180.0 180.0
C26 C25 C31 N32 149.8 0.0
C26 C25 C31 N34 335.7 180.0
C25 C26 C28 C29 181.4 180.2
C28 C26 C25 H26 180.0 180.0
S24 C25 C31 C26 180.0 180.0
C31 C25 C26 C28 179.3 180.0
C31 C25 C26 H26 359.3 360.0
N32 C31 C25 N34 174.1 180.0
C25 C31 N32 H32 186.8 180.0
C25 C31 N34 C36 182.0 180.0
C25 C31 N34 H34 2.0 0.1
N05 C29 C28 C26 183.2 180.3
C23 C28 C26 C29 181.1 179.8
C28 C26 C25 C31 179.3 180.0
C25 C26 C28 H26 180.0 180.0
C26 C28 C29 O30 359.8 0.0
N05 C29 C28 O30 183.4 180.2
C23 C28 C29 C26 178.9 180.2
C29 C28 C26 H26 1.4 0.2
N05 C29 O30 C28 176.5 179.8
C25 C31 N32 N34 186.8 180.0
N32 C31 N34 C36 8.6 360.0
N32 C31 N34 H34 188.6 180.1
C25 C31 N34 N32 173.4 180.0
N34 C31 N32 H32 0.0 0.0
C31 N34 C36 C38 116.7 155.0
C31 N34 C36 C50 238.9 276.2
C36 N34 C31 H34 180.0 179.9
C31 N34 C36 H36 358.3 35.5
C31 N34 C36 H34 180.0 180.1
C38 C36 N34 C50 237.8 238.8
N34 C36 C38 C41 184.1 190.3
C38 C36 N34 H36 118.4 119.5
N34 C36 C38 H381 304.2 310.5
N34 C36 C38 H382 64.0 70.1
N34 C36 C50 C47 182.5 169.7
C50 C36 N34 H36 240.6 240.7
N34 C36 C50 H501 303.4 289.9
N34 C36 C50 H502 61.5 49.6
N34 C36 C38 C50 121.1 120.3
C38 C36 N34 H34 296.7 335.0
N34 C36 C38 H36 241.0 240.5
C38 C36 C50 C47 302.3 290.1
C50 C36 C38 H36 120.0 120.2
C38 C36 C50 H501 63.2 50.2
C38 C36 C50 H502 181.4 169.9
C36 C38 C41 S44 292.0 296.3
C41 C38 C36 H381 239.9 239.8
C41 C38 C36 H382 120.1 120.2
C36 C38 C41 H411 51.9 56.2
C36 C38 C41 H412 172.1 176.5
H381 C38 C36 H382 240.2 240.3
N34 C36 C50 C38 240.2 239.7
C50 C36 N34 H34 58.9 96.1
N34 C36 C50 H36 120.1 119.4
C50 C36 C38 C41 63.1 70.0
C38 C36 C50 H36 240.0 239.7
C50 C36 C38 H381 183.2 190.1
C50 C36 C38 H382 303.0 309.8
S44 C47 C50 C36 54.9 63.6
C47 C50 C36 H501 239.1 239.8
C47 C50 C36 H502 120.9 120.2
C36 C50 C47 H471 295.0 303.8
C36 C50 C47 H472 174.9 183.5
H501 C50 C36 H502 241.8 240.3
C41 C38 C36 C50 63.1 70.0
C41 C38 C36 H36 303.1 309.8
C36 C38 C41 H381 120.1 120.2
C36 C38 C41 H382 239.9 239.8
C38 C41 S44 O45 176.3 168.6
C38 C41 S44 O46 306.2 299.9
C38 C41 S44 C47 61.3 54.3
S44 C41 C38 H411 240.1 240.1
S44 C41 C38 H412 119.9 119.8
H381 C38 C41 H382 119.8 119.6
H411 C41 C38 H412 239.8 239.7
S44 C41 C38 H381 171.9 176.2
S44 C41 C38 H382 52.1 56.5
C38 C41 S44 H411 119.9 119.9
C38 C41 S44 H412 240.1 240.2
O45 S44 C41 O46 230.1 228.7
O45 S44 C41 C47 115.0 114.3
O46 S44 C41 C47 244.9 245.6
C41 S44 C47 C50 306.7 305.7
C41 S44 C47 H471 66.7 65.6
C41 S44 C47 H472 186.8 185.8
H411 C41 S44 H412 120.2 120.3
C41 S44 O45 O46 125.0 125.2
C41 S44 O45 C47 250.0 250.6
O45 S44 C41 H411 56.4 48.7
O45 S44 C41 H412 296.2 288.4
O46 S44 O45 C47 125.0 125.4
O45 S44 C47 C50 191.6 191.4
O45 S44 C47 H471 311.6 311.3
O45 S44 C47 H472 71.7 71.5
C41 S44 O46 O45 235.0 234.8
C41 S44 O46 C47 110.0 109.4
O46 S44 C41 H411 186.3 180.0
O46 S44 C41 H412 66.1 59.7
O45 S44 O46 C47 235.0 234.7
O46 S44 C47 C50 61.8 60.0
O46 S44 C47 H471 181.7 179.9
O46 S44 C47 H472 301.8 300.2
C36 C50 C47 S44 54.9 63.6
C41 S44 C47 O45 115.1 114.3
C41 S44 C47 O46 244.9 245.7
C47 S44 C41 H411 301.4 294.4
C47 S44 C41 H412 181.2 174.1
O45 S44 C47 O46 129.9 131.3
S44 C47 C50 H501 294.0 303.5
S44 C47 C50 H502 175.9 183.8
C50 C47 S44 H471 240.0 240.1
C50 C47 S44 H472 119.9 119.9
H471 C47 S44 H472 239.9 239.7
C47 C50 C36 H36 62.4 50.3
C36 C50 C47 H501 120.9 120.2
C36 C50 C47 H502 239.0 239.8
S44 C47 C50 H471 119.9 119.9
S44 C47 C50 H472 240.1 240.1
H501 C50 C47 H502 118.2 119.6
H471 C47 C50 H472 120.1 120.2
H011 C01 N05 C06 180.0 90.0
H011 C01 N05 C29 357.6 269.7
N05 C01 H011 H012 120.0 120.0
N05 C01 H011 H013 240.0 240.0
H012 C01 H011 H013 120.0 120.0
H012 C01 N05 C06 300.0 210.0
H012 C01 N05 C29 117.5 29.7
N05 C01 H012 H011 240.0 240.0
N05 C01 H012 H013 120.0 120.0
H011 C01 H012 H013 240.0 240.1
H013 C01 N05 C06 60.0 330.0
H013 C01 N05 C29 237.5 149.8
N05 C01 H013 H011 120.0 120.0
N05 C01 H013 H012 240.0 240.0
H011 C01 H013 H012 120.0 120.0
H06 C06 N05 C29 181.4 180.2
N05 C06 H06 C08 180.0 180.1
H06 C06 C08 C09 356.6 0.1
H06 C06 C08 C23 180.8 180.0
H10 C10 C09 C17 177.0 180.2
C09 C10 H10 C12 180.0 180.0
H10 C10 C12 C14 182.1 180.0
H10 C10 C12 H12 2.1 0.0
C09 C17 H17 C16 180.0 179.7
H17 C17 C16 C19 1.3 0.0
C10 C12 H12 C14 180.0 180.0
H12 C12 C10 H10 2.1 0.0
H12 C12 C14 C16 180.0 180.0
H12 C12 C14 H14 0.0 0.0
C12 C14 H14 C16 180.0 180.0
H14 C14 C12 H12 0.0 0.0
H14 C14 C16 C17 178.9 179.7
H14 C14 C16 C19 357.7 360.0
H26 C26 C25 C31 359.3 360.0
C25 C26 H26 C28 180.0 180.0
H26 C26 C28 C29 1.4 0.2
H32 N32 C31 N34 0.0 0.0
C31 N34 H34 C36 180.0 179.9
H34 N34 C36 C38 296.7 335.0
H34 N34 C36 C50 58.9 96.1
H34 N34 C36 H36 178.3 215.5
N34 C36 H36 C38 117.8 119.5
N34 C36 H36 C50 239.7 240.6
H36 C36 N34 H34 178.3 215.5
C38 C36 H36 C50 121.9 121.1
H36 C36 C38 C41 303.1 309.8
H36 C36 C38 H381 63.2 69.9
H36 C36 C38 H382 183.0 189.6
H36 C36 C50 C47 62.4 50.3
H36 C36 C50 H501 183.3 170.5
H36 C36 C50 H502 301.4 290.2
H381 C38 C36 C50 183.2 190.1
C36 C38 H381 C41 239.5 239.5
H381 C38 C36 H36 63.2 69.9
C36 C38 H381 H382 119.8 119.8
H381 C38 C41 S44 171.9 176.2
C41 C38 H381 H382 240.3 240.3
H381 C38 C41 H411 291.8 296.1
H381 C38 C41 H412 52.0 56.4
H382 C38 C36 C50 303.0 309.8
C36 C38 H382 C41 120.5 120.5
H382 C38 C36 H36 183.0 189.6
C36 C38 H382 H381 240.2 240.2
H382 C38 C41 S44 52.1 56.5
C41 C38 H382 H381 119.7 119.7
H382 C38 C41 H411 172.0 176.4
H382 C38 C41 H412 292.2 296.7
C36 C50 H501 C47 234.3 239.5
H501 C50 C36 H36 183.3 170.5
C36 C50 H501 H502 117.1 119.7
C47 C50 H501 H502 242.9 240.3
H501 C50 C47 H471 174.1 183.6
H501 C50 C47 H472 54.0 63.3
C36 C50 H502 C47 125.8 120.5
H502 C50 C36 H36 301.4 290.2
C36 C50 H502 H501 242.9 240.3
C47 C50 H502 H501 117.1 119.7
H502 C50 C47 H471 55.9 63.9
H502 C50 C47 H472 295.8 303.7
C38 C41 H411 S44 240.7 240.5
H411 C41 C38 H381 291.8 296.1
H411 C41 C38 H382 172.0 176.4
C38 C41 H411 H412 120.3 120.2
H411 C41 S44 O45 56.4 48.7
H411 C41 S44 O46 186.3 180.0
H411 C41 S44 C47 301.4 294.4
S44 C41 H411 H412 239.6 239.7
C38 C41 H412 S44 119.3 119.5
H412 C41 C38 H381 52.0 56.4
H412 C41 C38 H382 292.2 296.7
C38 C41 H412 H411 239.7 239.8
H412 C41 S44 O45 296.2 288.4
H412 C41 S44 O46 66.1 59.7
H412 C41 S44 C47 181.2 174.1
S44 C41 H412 H411 120.3 120.3
S44 C47 H471 C50 240.4 240.4
S44 C47 H471 H472 120.2 120.2
H471 C47 C50 H501 174.1 183.6
H471 C47 C50 H502 55.9 63.9
C50 C47 H471 H472 239.8 239.8
S44 C47 H472 C50 119.6 119.6
S44 C47 H472 H471 239.8 239.8
H472 C47 C50 H501 54.0 63.3
H472 C47 C50 H502 295.8 303.7
C50 C47 H472 H471 120.2 120.2