PDB Chemical Component 5U6
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5U6
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C26 |
O25 |
1.431 |
1.429 |
| O25 |
C17 |
1.372 |
1.359 |
| C13 |
C17 |
1.397 |
1.385 |
| C13 |
C21 |
1.393 |
1.382 |
| C17 |
C18 |
1.411 |
1.399 |
| C14 |
C21 |
1.517 |
1.506 |
| C14 |
N15 |
1.484 |
1.469 |
| C21 |
C20 |
1.397 |
1.388 |
| C16 |
N15 |
1.470 |
1.469 |
| C18 |
C10 |
1.492 |
1.481 |
| C18 |
C19 |
1.403 |
1.393 |
| N15 |
C24 |
1.475 |
1.469 |
| C1 |
C5 |
1.405 |
1.395 |
| C1 |
C2 |
1.374 |
1.368 |
| C10 |
C5 |
1.473 |
1.467 |
| C10 |
C9 |
1.366 |
1.357 |
| C20 |
C19 |
1.396 |
1.384 |
| C20 |
O22 |
1.367 |
1.360 |
| C5 |
C6 |
1.433 |
1.416 |
| C2 |
N3 |
1.329 |
1.323 |
| C9 |
N8 |
1.363 |
1.363 |
| C6 |
C4 |
1.403 |
1.392 |
| C6 |
C7 |
1.475 |
1.466 |
| N3 |
C4 |
1.326 |
1.318 |
| N8 |
C7 |
1.357 |
1.349 |
| N8 |
C12 |
1.472 |
1.465 |
| C7 |
O11 |
1.223 |
1.217 |
| O22 |
C23 |
1.433 |
1.430 |
| C4 |
H1 |
1.080 |
1.081 |
| C13 |
H2 |
1.080 |
1.080 |
| C24 |
H3 |
1.100 |
1.090 |
| C24 |
H4 |
1.100 |
1.090 |
| C24 |
H5 |
1.100 |
1.090 |
| C26 |
H6 |
1.100 |
1.090 |
| C26 |
H7 |
1.100 |
1.090 |
| C26 |
H8 |
1.101 |
1.090 |
| C1 |
H9 |
1.080 |
1.080 |
| C2 |
H10 |
1.080 |
1.080 |
| C16 |
H11 |
1.100 |
1.090 |
| C16 |
H12 |
1.100 |
1.090 |
| C16 |
H13 |
1.100 |
1.090 |
| C9 |
H14 |
1.080 |
1.080 |
| C12 |
H15 |
1.100 |
1.089 |
| C12 |
H16 |
1.100 |
1.090 |
| C12 |
H17 |
1.100 |
1.090 |
| C19 |
H18 |
1.080 |
1.080 |
| C14 |
H19 |
1.100 |
1.090 |
| C14 |
H20 |
1.100 |
1.090 |
| C23 |
H22 |
1.100 |
1.090 |
| C23 |
H23 |
1.100 |
1.089 |
| C23 |
H24 |
1.100 |
1.090 |
Bond Angles for 5U6
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O25 |
C26 |
H6 |
109.5 |
109.5 |
| O25 |
C26 |
H7 |
109.5 |
109.4 |
| O25 |
C26 |
H8 |
109.4 |
109.5 |
| C17 |
C13 |
C21 |
121.1 |
120.2 |
| C13 |
C17 |
C18 |
119.1 |
119.8 |
| C17 |
C13 |
H2 |
119.4 |
119.9 |
| C13 |
C21 |
C20 |
119.9 |
120.2 |
| C21 |
C13 |
H2 |
119.4 |
119.9 |
| C17 |
C18 |
C19 |
119.5 |
119.7 |
| C16 |
N15 |
C14 |
111.1 |
111.0 |
| N15 |
C14 |
H19 |
109.0 |
109.4 |
| N15 |
C14 |
H20 |
109.0 |
109.5 |
| C21 |
C20 |
C19 |
119.6 |
120.1 |
| C21 |
C20 |
O22 |
119.3 |
119.9 |
| N15 |
C16 |
H11 |
109.5 |
109.4 |
| N15 |
C16 |
H12 |
109.5 |
109.5 |
| N15 |
C16 |
H13 |
109.5 |
109.4 |
| C18 |
C10 |
C9 |
119.5 |
120.5 |
| C20 |
C19 |
C18 |
120.8 |
119.9 |
| C18 |
C19 |
H18 |
119.6 |
120.1 |
| N15 |
C24 |
H3 |
109.5 |
109.5 |
| N15 |
C24 |
H4 |
109.5 |
109.5 |
| N15 |
C24 |
H5 |
109.5 |
109.5 |
| C2 |
C1 |
H9 |
120.6 |
120.8 |
| C1 |
C2 |
H10 |
119.2 |
119.1 |
| C10 |
C9 |
N8 |
123.4 |
122.3 |
| C10 |
C9 |
H14 |
118.3 |
118.9 |
| C19 |
C20 |
O22 |
121.0 |
120.0 |
| C20 |
C19 |
H18 |
119.6 |
120.0 |
| C20 |
O22 |
C23 |
120.4 |
117.0 |
| C5 |
C6 |
C7 |
118.7 |
118.3 |
| C9 |
N8 |
C12 |
118.7 |
118.8 |
| C6 |
C4 |
H1 |
120.0 |
120.1 |
| C6 |
C7 |
O11 |
121.1 |
120.4 |
| N3 |
C4 |
H1 |
120.0 |
120.1 |
| N8 |
C7 |
O11 |
119.8 |
120.3 |
| N8 |
C12 |
H15 |
109.5 |
109.5 |
| N8 |
C12 |
H16 |
109.5 |
109.5 |
| N8 |
C12 |
H17 |
109.5 |
109.4 |
| O22 |
C23 |
H22 |
109.5 |
109.4 |
| O22 |
C23 |
H23 |
109.4 |
109.5 |
| O22 |
C23 |
H24 |
109.4 |
109.4 |
| H3 |
C24 |
H4 |
109.4 |
109.5 |
| H3 |
C24 |
H5 |
109.5 |
109.5 |
| H4 |
C24 |
H5 |
109.5 |
109.5 |
| H6 |
C26 |
H7 |
109.5 |
109.5 |
| H6 |
C26 |
H8 |
109.5 |
109.5 |
| H7 |
C26 |
H8 |
109.5 |
109.4 |
| H11 |
C16 |
H12 |
109.4 |
109.5 |
| H11 |
C16 |
H13 |
109.4 |
109.5 |
| H12 |
C16 |
H13 |
109.5 |
109.5 |
| H15 |
C12 |
H16 |
109.4 |
109.5 |
| H15 |
C12 |
H17 |
109.5 |
109.5 |
| H16 |
C12 |
H17 |
109.4 |
109.5 |
| H19 |
C14 |
H20 |
109.4 |
109.5 |
| H22 |
C23 |
H23 |
109.5 |
109.5 |
| H22 |
C23 |
H24 |
109.5 |
109.5 |
| H23 |
C23 |
H24 |
109.5 |
109.5 |
Torsion Angles for 5U6
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| H6 |
C26 |
O25 |
H7 |
240.0 |
240.0 |
| H6 |
C26 |
O25 |
H8 |
120.0 |
120.1 |
| H7 |
C26 |
O25 |
H8 |
240.0 |
240.0 |
| O25 |
C17 |
C13 |
H2 |
359.7 |
359.7 |
| O25 |
C17 |
C18 |
C19 |
180.2 |
180.0 |
| C17 |
C13 |
C21 |
C20 |
359.7 |
0.0 |
| C21 |
C13 |
C17 |
H2 |
180.0 |
180.3 |
| C13 |
C17 |
C18 |
C19 |
358.7 |
360.0 |
| C21 |
C13 |
C17 |
C18 |
1.2 |
0.0 |
| C17 |
C13 |
C21 |
H2 |
180.0 |
179.7 |
| C13 |
C21 |
C20 |
C19 |
359.5 |
360.0 |
| C13 |
C21 |
C20 |
O22 |
177.9 |
180.0 |
| C18 |
C17 |
C13 |
C21 |
1.2 |
0.0 |
| C18 |
C17 |
C13 |
H2 |
181.2 |
179.7 |
| C17 |
C18 |
C10 |
C9 |
304.5 |
285.0 |
| C20 |
C19 |
C18 |
C17 |
0.5 |
0.0 |
| C17 |
C18 |
C19 |
H18 |
180.5 |
180.0 |
| C14 |
C21 |
C13 |
H2 |
0.0 |
0.3 |
| C14 |
C21 |
C20 |
O22 |
357.5 |
360.0 |
| C14 |
N15 |
C16 |
H11 |
180.0 |
60.0 |
| C14 |
N15 |
C16 |
H12 |
300.0 |
180.0 |
| C14 |
N15 |
C16 |
H13 |
60.0 |
300.0 |
| C14 |
N15 |
C24 |
H3 |
180.0 |
180.0 |
| C14 |
N15 |
C24 |
H4 |
300.0 |
300.0 |
| C14 |
N15 |
C24 |
H5 |
60.0 |
60.0 |
| H19 |
C14 |
N15 |
H20 |
119.4 |
120.0 |
| C20 |
C21 |
C13 |
H2 |
179.7 |
180.3 |
| C21 |
C20 |
C19 |
C18 |
0.4 |
0.0 |
| C19 |
C20 |
C21 |
O22 |
181.6 |
180.0 |
| C21 |
C20 |
C19 |
H18 |
180.4 |
180.0 |
| C21 |
C20 |
O22 |
C23 |
152.8 |
180.0 |
| C16 |
N15 |
C14 |
H19 |
63.5 |
173.9 |
| C16 |
N15 |
C14 |
H20 |
304.1 |
54.0 |
| C16 |
N15 |
C24 |
H3 |
305.5 |
56.0 |
| C16 |
N15 |
C24 |
H4 |
65.5 |
176.0 |
| C16 |
N15 |
C24 |
H5 |
185.5 |
296.0 |
| H11 |
C16 |
N15 |
H12 |
240.0 |
240.0 |
| H11 |
C16 |
N15 |
H13 |
120.0 |
119.9 |
| H12 |
C16 |
N15 |
H13 |
240.0 |
239.9 |
| C18 |
C10 |
C9 |
N8 |
178.2 |
180.0 |
| C18 |
C10 |
C9 |
H14 |
358.2 |
360.0 |
| C19 |
C18 |
C10 |
C9 |
123.8 |
105.0 |
| C18 |
C19 |
C20 |
O22 |
182.1 |
180.0 |
| C20 |
C19 |
C18 |
H18 |
180.0 |
180.0 |
| H3 |
C24 |
N15 |
H4 |
240.0 |
240.0 |
| H3 |
C24 |
N15 |
H5 |
120.0 |
120.0 |
| H4 |
C24 |
N15 |
H5 |
240.0 |
240.0 |
| C10 |
C9 |
N8 |
C12 |
183.5 |
180.0 |
| C17 |
C18 |
C19 |
C20 |
0.5 |
0.0 |
| C21 |
C20 |
C19 |
O22 |
178.3 |
180.0 |
| C18 |
C19 |
C20 |
H18 |
180.0 |
180.0 |
| C19 |
C20 |
O22 |
C23 |
331.1 |
360.0 |
| C21 |
C20 |
O22 |
C19 |
181.6 |
180.0 |
| O22 |
C20 |
C19 |
C18 |
182.1 |
180.0 |
| O22 |
C20 |
C19 |
H18 |
2.1 |
0.0 |
| C20 |
O22 |
C23 |
H22 |
180.0 |
180.0 |
| C20 |
O22 |
C23 |
H23 |
300.0 |
300.0 |
| C20 |
O22 |
C23 |
H24 |
60.0 |
60.1 |
| C5 |
C6 |
C4 |
H1 |
180.6 |
180.1 |
| C5 |
C6 |
C7 |
O11 |
178.1 |
180.0 |
| C2 |
N3 |
C4 |
H1 |
179.4 |
179.9 |
| C10 |
C9 |
N8 |
H14 |
180.0 |
180.0 |
| C9 |
N8 |
C7 |
O11 |
181.5 |
180.0 |
| C9 |
N8 |
C12 |
H15 |
180.0 |
180.0 |
| C9 |
N8 |
C12 |
H16 |
300.0 |
300.0 |
| C9 |
N8 |
C12 |
H17 |
60.0 |
60.0 |
| N3 |
C4 |
C6 |
H1 |
180.0 |
179.9 |
| C7 |
C6 |
C4 |
H1 |
0.4 |
0.1 |
| N8 |
C7 |
C6 |
O11 |
179.1 |
180.0 |
| C6 |
C4 |
N3 |
H1 |
180.0 |
180.1 |
| C6 |
C7 |
N8 |
O11 |
180.8 |
180.0 |
| C12 |
N8 |
C7 |
O11 |
358.6 |
0.0 |
| H15 |
C12 |
N8 |
H16 |
240.0 |
240.0 |
| H15 |
C12 |
N8 |
H17 |
120.0 |
120.0 |
| H16 |
C12 |
N8 |
H17 |
240.0 |
240.0 |
| H22 |
C23 |
O22 |
H23 |
240.0 |
240.0 |
| H22 |
C23 |
O22 |
H24 |
120.0 |
119.9 |
| H23 |
C23 |
O22 |
H24 |
240.0 |
240.0 |
| C17 |
C13 |
H2 |
C21 |
180.0 |
180.3 |
| H2 |
C13 |
C17 |
C18 |
181.2 |
179.7 |
| H2 |
C13 |
C21 |
C20 |
179.7 |
180.3 |
| N15 |
C24 |
H3 |
H4 |
120.0 |
120.0 |
| N15 |
C24 |
H3 |
H5 |
240.0 |
240.0 |
| H4 |
C24 |
H3 |
H5 |
120.0 |
120.0 |
| N15 |
C24 |
H4 |
H3 |
240.0 |
240.0 |
| N15 |
C24 |
H4 |
H5 |
120.0 |
120.0 |
| H3 |
C24 |
H4 |
H5 |
240.0 |
240.0 |
| N15 |
C24 |
H5 |
H3 |
120.0 |
120.0 |
| N15 |
C24 |
H5 |
H4 |
240.0 |
240.0 |
| H3 |
C24 |
H5 |
H4 |
120.0 |
120.0 |
| O25 |
C26 |
H6 |
H7 |
120.0 |
120.0 |
| O25 |
C26 |
H6 |
H8 |
240.0 |
240.0 |
| H7 |
C26 |
H6 |
H8 |
120.0 |
120.0 |
| O25 |
C26 |
H7 |
H6 |
240.0 |
240.0 |
| O25 |
C26 |
H7 |
H8 |
120.0 |
120.0 |
| H6 |
C26 |
H7 |
H8 |
240.0 |
240.0 |
| O25 |
C26 |
H8 |
H6 |
120.0 |
120.0 |
| O25 |
C26 |
H8 |
H7 |
240.0 |
240.0 |
| H6 |
C26 |
H8 |
H7 |
120.0 |
120.0 |
| H9 |
C1 |
C2 |
H10 |
1.4 |
0.1 |
| H10 |
C2 |
C1 |
H9 |
1.4 |
0.1 |
| H11 |
C16 |
N15 |
C14 |
180.0 |
60.0 |
| N15 |
C16 |
H11 |
H12 |
120.0 |
120.0 |
| N15 |
C16 |
H11 |
H13 |
240.0 |
240.1 |
| H12 |
C16 |
H11 |
H13 |
120.0 |
120.1 |
| H12 |
C16 |
N15 |
C14 |
300.0 |
180.0 |
| N15 |
C16 |
H12 |
H11 |
240.0 |
240.0 |
| N15 |
C16 |
H12 |
H13 |
120.0 |
120.0 |
| H11 |
C16 |
H12 |
H13 |
240.1 |
240.0 |
| H13 |
C16 |
N15 |
C14 |
60.0 |
300.0 |
| N15 |
C16 |
H13 |
H11 |
120.0 |
119.9 |
| N15 |
C16 |
H13 |
H12 |
240.0 |
240.0 |
| H11 |
C16 |
H13 |
H12 |
120.0 |
120.0 |
| C10 |
C9 |
H14 |
N8 |
180.0 |
180.0 |
| H14 |
C9 |
N8 |
C12 |
3.5 |
0.0 |
| N8 |
C12 |
H15 |
H16 |
120.0 |
120.0 |
| N8 |
C12 |
H15 |
H17 |
240.0 |
240.0 |
| H16 |
C12 |
H15 |
H17 |
120.0 |
120.1 |
| N8 |
C12 |
H16 |
H15 |
240.0 |
240.0 |
| N8 |
C12 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C12 |
H16 |
H17 |
240.0 |
239.9 |
| N8 |
C12 |
H17 |
H15 |
120.0 |
120.0 |
| N8 |
C12 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
C12 |
H17 |
H16 |
120.0 |
120.1 |
| C20 |
C19 |
H18 |
C18 |
180.0 |
180.0 |
| H18 |
C19 |
C20 |
O22 |
2.1 |
0.0 |
| N15 |
C14 |
H19 |
H20 |
240.8 |
240.0 |
| N15 |
C14 |
H20 |
H19 |
119.2 |
119.9 |
| O22 |
C23 |
H22 |
H23 |
120.0 |
120.0 |
| O22 |
C23 |
H22 |
H24 |
240.0 |
240.1 |
| H23 |
C23 |
H22 |
H24 |
120.0 |
120.1 |
| O22 |
C23 |
H23 |
H22 |
240.0 |
240.0 |
| O22 |
C23 |
H23 |
H24 |
120.0 |
120.0 |
| H22 |
C23 |
H23 |
H24 |
240.0 |
240.0 |
| O22 |
C23 |
H24 |
H22 |
120.0 |
119.9 |
| O22 |
C23 |
H24 |
H23 |
240.0 |
240.0 |
| H22 |
C23 |
H24 |
H23 |
120.0 |
120.1 |