PDB Chemical Component 5SF

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5SF

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
N4	N5	1.374	1.400
N4	C14	1.325	1.307
C16	N5	1.458	1.466
N5	C15	1.339	1.346
C14	C13	1.397	1.410
C15	C13	1.370	1.366
C13	C11	1.484	1.482
C12	C11	1.396	1.407
C12	N3	1.319	1.311
C11	N2	1.324	1.323
N3	C8	1.371	1.338
N2	C9	1.369	1.338
C8	C9	1.407	1.418
C8	C7	1.410	1.407
C9	C10	1.411	1.404
C7	C6	1.365	1.359
C10	C5	1.405	1.378
C6	C5	1.406	1.401
C5	N1	1.418	1.395
N1	C4	1.474	1.465
N1	C17	1.422	1.397
C4	C3	1.521	1.531
C3	N	1.473	1.469
C1	N	1.477	1.469
C1	C2	1.513	1.530
C1	C	1.505	1.530
C17	C18	1.394	1.389
C17	C22	1.394	1.389
C18	C19	1.389	1.386
C22	C21	1.386	1.386
C19	O1	1.374	1.358
C19	C20	1.387	1.388
O1	C24	1.422	1.429
C21	C20	1.386	1.387
C21	O	1.373	1.359
O	C23	1.421	1.428
C1	H3	1.100	1.090
C2	H4	1.100	1.090
C2	H5	1.100	1.090
C2	H6	1.100	1.090
C3	H9	1.100	1.089
C3	H8	1.100	1.091
C7	H13	1.080	1.081
C10	H14	1.080	1.079
C12	H15	1.080	1.080
C14	H16	1.080	1.079
C15	H17	1.080	1.080
C16	H19	1.100	1.090
C16	H20	1.100	1.090
C16	H18	1.100	1.089
C20	H22	1.080	1.081
C22	H23	1.080	1.080
C24	H28	1.101	1.091
C24	H27	1.100	1.090
C24	H29	1.100	1.090
C18	H21	1.080	1.080
C23	H24	1.100	1.091
C23	H25	1.100	1.090
C23	H26	1.100	1.090
C4	H11	1.100	1.090
C4	H10	1.101	1.090
N	H7	1.000	1.009
C	H	1.100	1.091
C	H2	1.100	1.090
C	H1	1.100	1.090
C6	H12	1.081	1.080

Bond Angles for 5SF

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
N4	C14	H16	124.0	126.0
N5	C16	H19	109.5	109.5
N5	C16	H20	109.5	109.4
N5	C16	H18	109.5	109.5
N5	C15	H17	125.8	126.2
C13	C11	N2	116.5	119.8
C12	C11	N2	122.2	120.4
N3	C12	H15	118.8	119.7
C8	C9	C10	119.6	119.4
C8	C7	C6	120.7	120.0
C8	C7	H13	119.6	120.0
C9	C10	C5	120.4	119.6
C9	C10	H14	119.8	120.2
C7	C6	C5	121.4	120.9
C6	C7	H13	119.6	120.0
C7	C6	H12	119.3	119.5
C10	C5	N1	120.6	119.7
C5	C10	H14	119.8	120.2
N1	C4	H11	110.0	109.5
N1	C4	H10	110.0	109.5
C4	C3	N	111.0	109.5
C4	C3	H9	109.1	109.5
C4	C3	H8	109.1	109.5
C1	N	C3	113.9	111.0
N	C3	H9	109.1	109.5
N	C3	H8	109.1	109.5
C3	N	H7	108.4	111.0
C2	C1	N	109.2	109.5
N	C1	C	111.2	109.5
N	C1	H3	108.5	109.5
C1	N	H7	108.4	111.0
C2	C1	C	111.8	109.4
C2	C1	H3	108.0	109.5
C1	C2	H4	109.5	109.4
C1	C2	H5	109.5	109.5
C1	C2	H6	109.5	109.5
C	C1	H3	108.1	109.5
C1	C	H	109.5	109.5
C1	C	H2	109.5	109.5
C1	C	H1	109.5	109.5
C17	C18	H21	120.6	120.0
C17	C22	H23	120.5	120.0
C22	C21	O	113.4	120.0
C20	C19	O1	124.3	120.0
C19	O1	C24	119.7	117.0
C19	C20	H22	120.4	120.0
O1	C24	H28	109.5	109.5
O1	C24	H27	109.5	109.5
O1	C24	H29	109.5	109.5
C21	C20	H22	120.4	120.0
C21	O	C23	118.9	117.0
O	C23	H24	109.5	109.5
O	C23	H25	109.5	109.5
O	C23	H26	109.5	109.5
H4	C2	H5	109.4	109.5
H4	C2	H6	109.5	109.5
H5	C2	H6	109.5	109.5
H9	C3	H8	109.5	109.5
H19	C16	H20	109.5	109.5
H19	C16	H18	109.4	109.5
H20	C16	H18	109.4	109.5
H28	C24	H27	109.5	109.4
H28	C24	H29	109.5	109.4
H27	C24	H29	109.5	109.5
H24	C23	H25	109.5	109.4
H24	C23	H26	109.5	109.5
H25	C23	H26	109.5	109.4
H11	C4	H10	109.5	109.5
H	C	H2	109.5	109.5
H	C	H1	109.4	109.4
H2	C	H1	109.5	109.5

Torsion Angles for 5SF

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
N5	N4	C14	H16	180.3	179.9
N4	N5	C16	H19	360.0	269.9
N4	N5	C16	H20	120.0	29.8
N4	N5	C16	H18	240.0	149.9
N4	N5	C15	H17	179.9	180.2
C16	N5	C15	H17	359.8	0.1
H19	C16	N5	H20	240.0	240.0
H19	C16	N5	H18	120.0	120.0
H20	C16	N5	H18	240.0	240.0
C14	C13	C11	N2	192.4	0.0
C15	C13	C11	N2	4.5	179.8
C12	C11	C13	N2	181.0	180.0
C13	C11	C12	N2	179.0	180.0
N3	C12	C11	N2	359.8	360.0
N3	C8	C7	C6	181.3	180.0
N3	C8	C7	H13	1.3	359.7
N2	C9	C10	H14	355.6	360.0
C9	C8	C7	C6	358.1	0.0
C9	C8	C7	H13	178.1	179.7
C8	C9	C10	C5	357.1	0.0
C8	C9	C10	H14	177.1	180.0
C8	C7	C6	C5	0.2	0.0
C6	C7	C8	H13	180.0	180.3
C8	C7	C6	H12	180.2	179.8
C9	C10	C5	N1	185.7	180.0
C5	C10	C9	H14	180.0	180.0
C8	C7	C6	H13	180.0	179.7
C9	C10	C5	H14	180.0	180.0
C7	C6	C5	C10	0.1	360.0
C5	C6	C7	H13	180.2	180.3
C7	C6	C5	H12	180.0	179.8
C6	C5	C10	H14	181.2	180.0
C7	C6	C5	N1	175.6	180.0
N1	C5	C10	H14	5.7	0.0
C5	N1	C4	H11	191.7	150.0
C5	N1	C4	H10	312.4	30.0
C10	C5	N1	C4	7.0	88.1
N1	C4	C3	N	175.6	180.0
N1	C4	C3	H9	295.8	300.0
N1	C4	C3	H8	55.3	60.0
H11	C4	N1	H10	239.3	120.0
C10	C5	N1	C17	172.8	268.1
N1	C17	C18	H21	353.6	0.3
N1	C17	C22	H23	5.0	359.8
C1	N	C3	C4	156.5	180.0
N	C3	C4	H9	239.8	240.0
N	C3	C4	H8	120.2	120.0
C4	C3	N	H7	277.2	304.0
H9	C3	C4	H8	240.5	240.0
C4	C3	N	H9	120.2	120.0
C4	C3	N	H8	239.8	240.0
C2	C1	N	C3	175.6	205.0
C3	N	C1	C	51.9	85.0
C3	N	C1	H3	293.1	325.0
C1	N	C3	H7	239.3	236.0
H9	C3	N	H8	119.5	120.0
C4	C3	N	C1	156.5	180.0
C1	N	C3	H9	36.2	60.0
C1	N	C3	H8	276.7	300.0
C3	N	C1	H7	120.7	124.0
C2	C1	N	C	123.7	120.0
C2	C1	N	H3	242.5	239.9
N	C1	C2	H4	180.0	60.0
N	C1	C2	H5	300.0	180.0
N	C1	C2	H6	60.0	300.1
C	C1	N	H3	118.8	120.0
N	C1	C	H	180.0	60.0
N	C1	C	H2	300.0	180.0
N	C1	C	H1	60.0	300.0
N	C1	C2	C	236.6	240.0
N	C1	C2	H3	117.8	120.0
C2	C1	N	H7	54.9	81.0
C	C1	C2	H3	241.2	240.0
C2	C1	C	H	57.8	300.0
C2	C1	C	H2	177.7	60.0
C2	C1	C	H1	297.8	180.0
H4	C2	C1	H5	240.0	240.0
H4	C2	C1	H6	120.0	119.9
H5	C2	C1	H6	240.0	239.9
C	C1	N	C3	51.9	85.0
C2	C1	C	N	237.8	240.0
N	C1	C	H3	241.0	240.0
C	C1	N	H7	291.2	321.0
C2	C1	C	H3	118.8	120.0
C	C1	C2	H4	303.4	180.0
C	C1	C2	H5	63.4	300.0
C	C1	C2	H6	183.4	60.0
H	C	C1	H2	240.0	240.0
H	C	C1	H1	120.0	120.0
H2	C	C1	H1	240.0	240.0
C18	C17	C22	H23	181.5	180.3
C18	C19	C20	H22	177.8	179.7
C22	C21	C20	H22	180.8	180.0
C22	C21	O	C23	173.0	180.0
O1	C19	C20	H22	359.2	360.0
C19	O1	C24	H28	180.0	180.0
C19	O1	C24	H27	300.0	300.0
C19	O1	C24	H29	60.0	60.0
C20	C19	O1	C24	353.6	0.0
C21	C20	C19	H22	180.0	180.0
H28	C24	O1	H27	240.0	240.0
H28	C24	O1	H29	120.0	120.0
H27	C24	O1	H29	240.0	240.0
C21	C20	C19	O1	179.2	180.0
C19	C20	C21	H22	180.0	180.0
O	C21	C20	H22	1.1	360.0
C21	O	C23	H24	180.0	180.0
C21	O	C23	H25	300.0	300.0
C21	O	C23	H26	60.0	60.0
H24	C23	O	H25	240.0	240.0
H24	C23	O	H26	120.0	120.0
H25	C23	O	H26	240.0	240.0
H3	C1	N	C3	293.1	325.0
C2	C1	H3	N	118.2	120.0
N	C1	H3	C	120.7	120.0
H3	C1	N	H7	172.4	201.0
C2	C1	H3	C	238.9	240.0
H3	C1	C2	H4	62.2	300.0
H3	C1	C2	H5	182.2	60.0
H3	C1	C2	H6	302.2	180.1
H3	C1	C	H	299.0	180.0
H3	C1	C	H2	59.0	300.0
H3	C1	C	H1	179.0	60.0
H4	C2	C1	N	180.0	60.0
H4	C2	C1	C	303.4	180.0
H4	C2	C1	H3	62.2	300.0
C1	C2	H4	H5	120.0	120.0
C1	C2	H4	H6	240.0	240.0
H5	C2	H4	H6	120.0	120.1
H5	C2	C1	N	300.0	180.0
H5	C2	C1	C	63.4	300.0
H5	C2	C1	H3	182.2	60.0
C1	C2	H5	H4	240.0	240.1
C1	C2	H5	H6	120.0	120.0
H4	C2	H5	H6	240.0	240.0
H6	C2	C1	N	60.0	300.1
H6	C2	C1	C	183.4	60.0
H6	C2	C1	H3	302.2	180.1
C1	C2	H6	H4	120.0	119.9
C1	C2	H6	H5	240.0	240.0
H4	C2	H6	H5	120.0	120.1
C4	C3	H9	N	238.6	240.0
C4	C3	H9	H8	119.3	120.0
N	C3	H9	H8	240.7	240.0
H9	C3	N	H7	156.9	183.9
C4	C3	H8	N	121.4	120.0
C4	C3	H8	H9	240.7	240.0
N	C3	H8	H9	119.3	120.0
H8	C3	N	H7	37.4	63.9
C8	C7	H13	C6	180.0	180.3
H13	C7	C6	C5	180.2	180.3
H13	C7	C6	H12	0.2	0.1
C9	C10	H14	C5	180.0	180.0
H14	C10	C5	N1	5.7	0.0
H15	C12	C11	N2	179.8	180.0
N5	C16	H19	H20	120.0	119.9
N5	C16	H19	H18	240.0	240.0
H20	C16	H19	H18	119.9	120.1
N5	C16	H20	H19	240.0	240.1
N5	C16	H20	H18	120.0	120.0
H19	C16	H20	H18	240.1	239.9
N5	C16	H18	H19	120.0	120.0
N5	C16	H18	H20	240.0	240.0
H19	C16	H18	H20	120.0	120.1
H22	C20	C19	O1	359.2	360.0
H23	C22	C21	O	359.3	0.0
O1	C24	H28	H27	120.0	120.0
O1	C24	H28	H29	240.0	240.0
H27	C24	H28	H29	120.0	120.0
O1	C24	H27	H28	240.0	240.0
O1	C24	H27	H29	120.0	120.0
H28	C24	H27	H29	240.0	240.1
O1	C24	H29	H28	120.0	120.0
O1	C24	H29	H27	240.0	239.9
H28	C24	H29	H27	120.0	119.9
O	C23	H24	H25	120.0	120.0
O	C23	H24	H26	240.0	240.0
H25	C23	H24	H26	120.0	119.9
O	C23	H25	H24	240.0	240.0
O	C23	H25	H26	120.0	120.0
H24	C23	H25	H26	240.0	240.0
O	C23	H26	H24	120.0	120.0
O	C23	H26	H25	240.0	240.0
H24	C23	H26	H25	120.0	119.9
N1	C4	H11	H10	121.0	240.0
H11	C4	C3	N	55.9	300.0
H11	C4	C3	H9	176.1	60.0
H11	C4	C3	H8	295.7	180.0
N1	C4	H10	H11	239.0	120.0
H10	C4	C3	N	295.2	60.0
H10	C4	C3	H9	55.5	180.0
H10	C4	C3	H8	175.0	300.0
C1	N	H7	C3	124.1	124.0
H7	N	C3	H9	156.9	183.9
H7	N	C3	H8	37.4	63.9
H7	N	C1	C	291.2	321.0
H7	N	C1	H3	172.4	201.0
H	C	C1	H3	299.0	180.0
C1	C	H	H2	120.0	120.0
C1	C	H	H1	240.0	239.9
H2	C	H	H1	120.0	119.9
H2	C	C1	H3	59.0	300.0
C1	C	H2	H	240.0	240.0
C1	C	H2	H1	120.0	120.1
H	C	H2	H1	240.0	240.1
H1	C	C1	H3	179.0	60.0
C1	C	H1	H	120.0	120.0
C1	C	H1	H2	240.0	240.0
H	C	H1	H2	120.0	119.9
C7	C6	H12	C5	180.0	180.2
H12	C6	C7	H13	0.2	0.1