PDB Chemical Component 5RP
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5RP
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C2 |
C3 |
1.510 |
1.505 |
| C2 |
O1 |
1.443 |
1.428 |
| C2 |
H21 |
1.115 |
1.091 |
| C2 |
H22 |
1.115 |
1.091 |
| C3 |
C5 |
1.527 |
1.507 |
| C3 |
O4 |
1.222 |
1.207 |
| C5 |
O13 |
1.445 |
1.428 |
| C5 |
C6 |
1.579 |
1.529 |
| C5 |
H5 |
1.116 |
1.089 |
| O13 |
H13 |
0.951 |
0.967 |
| C6 |
O14 |
1.443 |
1.429 |
| C6 |
C7 |
1.563 |
1.529 |
| C6 |
H6 |
1.114 |
1.089 |
| O14 |
H14 |
0.950 |
0.967 |
| C7 |
O8 |
1.434 |
1.428 |
| C7 |
H71 |
1.115 |
1.090 |
| C7 |
H72 |
1.115 |
1.089 |
| O8 |
P9 |
1.608 |
1.610 |
| P9 |
O12 |
1.606 |
1.480 |
| P9 |
O11 |
1.607 |
1.610 |
| P9 |
O10 |
1.602 |
1.608 |
| O11 |
H11 |
0.949 |
0.966 |
| O10 |
H10 |
0.949 |
0.968 |
| O1 |
HO1 |
0.950 |
0.966 |
Bond Angles for 5RP
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C3 |
C2 |
O1 |
111.7 |
109.6 |
| C3 |
C2 |
H21 |
111.4 |
109.5 |
| C3 |
C2 |
H22 |
111.4 |
109.5 |
| C2 |
C3 |
C5 |
118.9 |
120.1 |
| C2 |
C3 |
O4 |
121.6 |
120.0 |
| O1 |
C2 |
H21 |
111.5 |
109.4 |
| O1 |
C2 |
H22 |
111.4 |
109.5 |
| C2 |
O1 |
HO1 |
111.6 |
106.9 |
| H21 |
C2 |
H22 |
98.8 |
109.4 |
| C5 |
C3 |
O4 |
119.5 |
120.0 |
| C3 |
C5 |
O13 |
114.9 |
109.5 |
| C3 |
C5 |
C6 |
111.3 |
109.5 |
| C3 |
C5 |
H5 |
104.5 |
109.4 |
| O13 |
C5 |
C6 |
110.2 |
109.5 |
| O13 |
C5 |
H5 |
105.7 |
109.5 |
| C5 |
O13 |
H13 |
114.9 |
106.8 |
| C6 |
C5 |
H5 |
109.9 |
109.5 |
| C5 |
C6 |
O14 |
110.4 |
109.5 |
| C5 |
C6 |
C7 |
114.3 |
109.5 |
| C5 |
C6 |
H6 |
104.9 |
109.5 |
| O14 |
C6 |
C7 |
107.6 |
109.4 |
| O14 |
C6 |
H6 |
111.9 |
109.4 |
| C6 |
O14 |
H14 |
110.4 |
106.8 |
| C7 |
C6 |
H6 |
107.8 |
109.5 |
| C6 |
C7 |
O8 |
109.0 |
109.5 |
| C6 |
C7 |
H71 |
112.3 |
109.4 |
| C6 |
C7 |
H72 |
112.4 |
109.5 |
| O8 |
C7 |
H71 |
112.4 |
109.4 |
| O8 |
C7 |
H72 |
112.4 |
109.5 |
| C7 |
O8 |
P9 |
123.5 |
106.9 |
| H71 |
C7 |
H72 |
98.0 |
109.4 |
| O8 |
P9 |
O12 |
111.8 |
109.4 |
| O8 |
P9 |
O11 |
110.9 |
109.5 |
| O8 |
P9 |
O10 |
105.7 |
109.5 |
| O12 |
P9 |
O11 |
109.1 |
109.4 |
| O12 |
P9 |
O10 |
111.3 |
109.5 |
| O11 |
P9 |
O10 |
108.0 |
109.5 |
| P9 |
O11 |
H11 |
110.9 |
106.8 |
| P9 |
O10 |
H10 |
105.7 |
106.8 |
Torsion Angles for 5RP
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O1 |
C2 |
C3 |
H21 |
234.7 |
120.0 |
| O1 |
C2 |
C3 |
H22 |
125.3 |
240.0 |
| C3 |
C2 |
O1 |
HO1 |
180.0 |
180.0 |
| H21 |
C2 |
C3 |
H22 |
250.7 |
119.9 |
| C5 |
C3 |
C2 |
O4 |
180.0 |
180.0 |
| C2 |
C3 |
C5 |
O13 |
218.2 |
210.0 |
| C2 |
C3 |
C5 |
C6 |
92.1 |
90.0 |
| C2 |
C3 |
C5 |
H5 |
333.6 |
330.0 |
| C3 |
C2 |
O1 |
H21 |
125.3 |
239.9 |
| C3 |
C2 |
O1 |
H22 |
234.7 |
120.0 |
| O1 |
C2 |
C3 |
C5 |
211.9 |
180.0 |
| O1 |
C2 |
C3 |
O4 |
32.0 |
0.0 |
| H21 |
C2 |
O1 |
H22 |
109.4 |
240.1 |
| C3 |
C2 |
H21 |
O1 |
234.6 |
120.1 |
| C3 |
C2 |
H21 |
H22 |
117.3 |
240.0 |
| H21 |
C2 |
C3 |
C5 |
337.3 |
60.0 |
| H21 |
C2 |
C3 |
O4 |
157.3 |
240.0 |
| O1 |
C2 |
H21 |
H22 |
242.7 |
119.9 |
| H21 |
C2 |
O1 |
HO1 |
54.7 |
300.0 |
| C3 |
C2 |
H22 |
O1 |
125.4 |
239.9 |
| C3 |
C2 |
H22 |
H21 |
242.8 |
120.0 |
| H22 |
C2 |
C3 |
C5 |
86.6 |
300.0 |
| H22 |
C2 |
C3 |
O4 |
266.6 |
120.0 |
| O1 |
C2 |
H22 |
H21 |
117.3 |
240.1 |
| H22 |
C2 |
O1 |
HO1 |
305.3 |
59.9 |
| C5 |
C3 |
C2 |
O1 |
211.9 |
180.0 |
| C5 |
C3 |
C2 |
H21 |
337.3 |
60.0 |
| C5 |
C3 |
C2 |
H22 |
86.6 |
300.0 |
| C2 |
C3 |
C5 |
O4 |
180.0 |
180.0 |
| O13 |
C5 |
C3 |
C6 |
126.1 |
120.0 |
| O13 |
C5 |
C3 |
H5 |
244.6 |
240.0 |
| C3 |
C5 |
O13 |
H13 |
180.0 |
300.0 |
| C6 |
C5 |
C3 |
H5 |
118.5 |
120.0 |
| C3 |
C5 |
C6 |
O14 |
176.1 |
300.0 |
| C3 |
C5 |
C6 |
C7 |
54.7 |
180.1 |
| C3 |
C5 |
C6 |
H6 |
296.8 |
60.0 |
| O4 |
C3 |
C2 |
O1 |
32.0 |
0.0 |
| O4 |
C3 |
C2 |
H21 |
157.3 |
240.0 |
| O4 |
C3 |
C2 |
H22 |
266.6 |
120.0 |
| C2 |
C3 |
O4 |
C5 |
180.0 |
180.0 |
| O4 |
C3 |
C5 |
O13 |
38.2 |
30.0 |
| O4 |
C3 |
C5 |
C6 |
272.1 |
270.0 |
| O4 |
C3 |
C5 |
H5 |
153.6 |
150.0 |
| O13 |
C5 |
C3 |
O4 |
38.2 |
30.0 |
| C3 |
C5 |
O13 |
C6 |
233.3 |
240.0 |
| C3 |
C5 |
O13 |
H5 |
114.7 |
120.0 |
| C6 |
C5 |
O13 |
H5 |
241.4 |
240.0 |
| O13 |
C5 |
C6 |
O14 |
47.5 |
180.0 |
| O13 |
C5 |
C6 |
C7 |
286.0 |
60.1 |
| O13 |
C5 |
C6 |
H6 |
168.1 |
300.0 |
| C6 |
C5 |
C3 |
O4 |
272.1 |
270.0 |
| C3 |
C5 |
C6 |
O13 |
128.7 |
120.0 |
| C3 |
C5 |
C6 |
H5 |
244.8 |
240.0 |
| O13 |
C5 |
C6 |
H5 |
116.1 |
120.0 |
| C6 |
C5 |
O13 |
H13 |
306.6 |
60.0 |
| O14 |
C6 |
C5 |
C7 |
121.5 |
119.9 |
| O14 |
C6 |
C5 |
H6 |
239.3 |
240.0 |
| C5 |
C6 |
O14 |
H14 |
180.0 |
300.0 |
| C7 |
C6 |
C5 |
H6 |
117.9 |
120.1 |
| C5 |
C6 |
C7 |
O8 |
277.8 |
180.0 |
| C5 |
C6 |
C7 |
H71 |
43.0 |
300.0 |
| C5 |
C6 |
C7 |
H72 |
152.5 |
59.9 |
| H5 |
C5 |
C3 |
O4 |
153.6 |
150.0 |
| C3 |
C5 |
H5 |
O13 |
238.3 |
240.0 |
| C3 |
C5 |
H5 |
C6 |
119.5 |
120.0 |
| O13 |
C5 |
H5 |
C6 |
241.1 |
240.0 |
| H5 |
C5 |
O13 |
H13 |
65.3 |
180.0 |
| H5 |
C5 |
C6 |
O14 |
291.4 |
60.0 |
| H5 |
C5 |
C6 |
C7 |
169.9 |
300.0 |
| H5 |
C5 |
C6 |
H6 |
52.0 |
180.0 |
| H13 |
O13 |
C5 |
C6 |
306.6 |
60.0 |
| H13 |
O13 |
C5 |
H5 |
65.3 |
180.0 |
| O14 |
C6 |
C5 |
H5 |
291.4 |
60.0 |
| C5 |
C6 |
O14 |
C7 |
234.7 |
240.0 |
| C5 |
C6 |
O14 |
H6 |
116.4 |
120.0 |
| C7 |
C6 |
O14 |
H6 |
241.7 |
240.0 |
| O14 |
C6 |
C7 |
O8 |
154.8 |
60.0 |
| O14 |
C6 |
C7 |
H71 |
280.1 |
180.0 |
| O14 |
C6 |
C7 |
H72 |
29.5 |
299.9 |
| C7 |
C6 |
C5 |
H5 |
169.9 |
300.0 |
| C5 |
C6 |
C7 |
O14 |
122.9 |
120.0 |
| C5 |
C6 |
C7 |
H6 |
243.8 |
239.9 |
| O14 |
C6 |
C7 |
H6 |
120.8 |
119.9 |
| C7 |
C6 |
O14 |
H14 |
305.3 |
60.0 |
| O8 |
C7 |
C6 |
H71 |
234.7 |
240.0 |
| O8 |
C7 |
C6 |
H72 |
125.3 |
120.1 |
| C6 |
C7 |
O8 |
P9 |
230.6 |
179.9 |
| H71 |
C7 |
C6 |
H72 |
250.6 |
240.0 |
| H6 |
C6 |
C5 |
H5 |
52.0 |
180.0 |
| C5 |
C6 |
H6 |
O14 |
240.3 |
240.0 |
| C5 |
C6 |
H6 |
C7 |
122.2 |
120.1 |
| O14 |
C6 |
H6 |
C7 |
241.8 |
240.1 |
| H6 |
C6 |
O14 |
H14 |
63.6 |
180.0 |
| H6 |
C6 |
C7 |
O8 |
34.0 |
300.1 |
| H6 |
C6 |
C7 |
H71 |
159.2 |
60.1 |
| H6 |
C6 |
C7 |
H72 |
268.7 |
180.0 |
| H14 |
O14 |
C6 |
C7 |
305.3 |
60.0 |
| H14 |
O14 |
C6 |
H6 |
63.6 |
180.0 |
| O8 |
C7 |
C6 |
H6 |
34.0 |
300.1 |
| C6 |
C7 |
O8 |
H71 |
125.2 |
120.0 |
| C6 |
C7 |
O8 |
H72 |
234.7 |
239.9 |
| H71 |
C7 |
O8 |
H72 |
109.5 |
119.9 |
| C7 |
O8 |
P9 |
O12 |
72.8 |
60.0 |
| C7 |
O8 |
P9 |
O11 |
310.9 |
179.9 |
| C7 |
O8 |
P9 |
O10 |
194.0 |
300.0 |
| H71 |
C7 |
C6 |
H6 |
159.2 |
60.1 |
| C6 |
C7 |
H71 |
O8 |
236.6 |
240.0 |
| C6 |
C7 |
H71 |
H72 |
118.3 |
120.0 |
| O8 |
C7 |
H71 |
H72 |
241.6 |
240.0 |
| H71 |
C7 |
O8 |
P9 |
105.4 |
60.0 |
| H72 |
C7 |
C6 |
H6 |
268.7 |
180.0 |
| C6 |
C7 |
H72 |
O8 |
123.4 |
120.1 |
| C6 |
C7 |
H72 |
H71 |
241.8 |
240.0 |
| O8 |
C7 |
H72 |
H71 |
118.4 |
119.9 |
| H72 |
C7 |
O8 |
P9 |
355.9 |
300.1 |
| P9 |
O8 |
C7 |
H71 |
105.4 |
60.0 |
| P9 |
O8 |
C7 |
H72 |
355.9 |
300.1 |
| O12 |
P9 |
O8 |
O11 |
122.0 |
240.1 |
| O12 |
P9 |
O8 |
O10 |
238.8 |
120.0 |
| O11 |
P9 |
O8 |
O10 |
116.8 |
239.9 |
| O8 |
P9 |
O11 |
H11 |
179.9 |
180.0 |
| O8 |
P9 |
O10 |
H10 |
180.0 |
299.9 |
| O8 |
P9 |
O12 |
O11 |
237.0 |
120.0 |
| O8 |
P9 |
O12 |
O10 |
117.9 |
240.0 |
| O11 |
P9 |
O12 |
O10 |
240.9 |
120.0 |
| O12 |
P9 |
O11 |
H11 |
56.4 |
299.9 |
| O12 |
P9 |
O10 |
H10 |
301.6 |
180.0 |
| O8 |
P9 |
O11 |
O12 |
123.5 |
240.1 |
| O8 |
P9 |
O11 |
O10 |
244.6 |
120.1 |
| O12 |
P9 |
O11 |
O10 |
121.1 |
240.0 |
| O11 |
P9 |
O10 |
H10 |
61.3 |
60.1 |
| O8 |
P9 |
O10 |
O12 |
238.5 |
120.0 |
| O8 |
P9 |
O10 |
O11 |
118.8 |
239.9 |
| O12 |
P9 |
O10 |
O11 |
240.3 |
119.9 |
| O10 |
P9 |
O11 |
H11 |
295.4 |
59.9 |
| H11 |
O11 |
P9 |
O10 |
295.4 |
59.9 |
| HO1 |
O1 |
C2 |
H21 |
54.7 |
300.0 |
| HO1 |
O1 |
C2 |
H22 |
305.3 |
59.9 |