PDB Chemical Component 5RM

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5RM

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
O19	C4	1.229	1.214
C4	O5	1.434	1.338
C4	N3	1.344	1.340
O5	C1	1.422	1.457
N3	C2	1.451	1.470
C2	C1	1.538	1.540
C2	H2	1.100	1.091
C1	C18	1.533	1.530
C1	C6	1.514	1.507
C18	H181	1.100	1.090
C18	H182	1.100	1.090
C18	H183	1.100	1.090
C6	C7	1.399	1.382
C6	C17	1.395	1.382
C7	C8	1.394	1.383
C7	H7	1.080	1.081
C8	C9	1.397	1.385
C8	H8	1.080	1.080
C9	O10	1.371	1.360
C9	C12	1.402	1.392
O10	C11	1.435	1.430
C11	H111	1.100	1.090
C11	H112	1.100	1.091
C11	H113	1.100	1.090
C12	C17	1.396	1.385
C12	O13	1.391	1.360
C17	H17	1.080	1.080
O13	C14	1.429	1.428
C14	C15	1.527	1.530
C14	H141	1.100	1.090
C14	H142	1.101	1.091
C15	C16	1.509	1.530
C15	H151	1.100	1.090
C15	H152	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.091
C16	H163	1.100	1.090
N3	H18	1.000	0.970
C2	H19	1.100	1.090

Bond Angles for 5RM

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
O19	C4	O5	119.3	123.1
O19	C4	N3	127.9	123.1
O5	C4	N3	107.9	113.8
C4	O5	C1	109.7	109.5
C4	N3	C2	112.6	108.9
C4	N3	H18	123.7	125.5
O5	C1	C2	104.7	104.0
O5	C1	C18	105.8	110.5
O5	C1	C6	111.1	110.5
N3	C2	C1	103.2	103.8
N3	C2	H2	111.6	110.5
C2	N3	H18	123.7	125.6
N3	C2	H19	112.9	110.6
C1	C2	H2	111.6	110.4
C2	C1	C18	113.0	110.4
C2	C1	C6	112.6	110.6
C1	C2	H19	112.9	110.8
H2	C2	H19	104.8	110.6
C18	C1	C6	109.5	110.5
C1	C18	H181	109.5	109.4
C1	C18	H182	109.5	109.5
C1	C18	H183	109.5	109.5
C1	C6	C7	120.4	119.9
C1	C6	C17	120.9	119.9
H181	C18	H182	109.4	109.5
H181	C18	H183	109.5	109.5
H182	C18	H183	109.5	109.5
C7	C6	C17	118.6	120.1
C6	C7	C8	120.8	120.2
C6	C7	H7	119.6	119.9
C6	C17	C12	121.5	120.0
C6	C17	H17	119.2	120.0
C8	C7	H7	119.6	119.9
C7	C8	C9	119.9	120.0
C7	C8	H8	120.0	120.0
C9	C8	H8	120.0	120.0
C8	C9	O10	122.0	120.1
C8	C9	C12	120.1	119.9
O10	C9	C12	118.0	120.0
C9	O10	C11	124.6	117.0
C9	C12	C17	119.1	119.8
C9	C12	O13	118.8	120.1
O10	C11	H111	109.5	109.4
O10	C11	H112	109.5	109.5
O10	C11	H113	109.5	109.5
H111	C11	H112	109.5	109.5
H111	C11	H113	109.5	109.6
H112	C11	H113	109.5	109.4
C17	C12	O13	122.1	120.1
C12	C17	H17	119.3	120.0
C12	O13	C14	123.7	117.0
O13	C14	C15	108.9	109.5
O13	C14	H141	109.7	109.5
O13	C14	H142	109.8	109.4
C15	C14	H141	109.6	109.5
C15	C14	H142	109.8	109.5
C14	C15	C16	108.9	109.5
C14	C15	H151	109.7	109.5
C14	C15	H152	109.8	109.5
H141	C14	H142	109.1	109.5
C16	C15	H151	109.7	109.5
C16	C15	H152	109.8	109.5
C15	C16	H161	109.5	109.5
C15	C16	H162	109.4	109.5
C15	C16	H163	109.5	109.5
H151	C15	H152	109.0	109.5
H161	C16	H162	109.5	109.5
H161	C16	H163	109.5	109.5
H162	C16	H163	109.5	109.5

Torsion Angles for 5RM

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
O5	C4	O19	N3	208.0	180.3
O19	C4	O5	C1	169.0	180.0
O19	C4	N3	C2	201.4	180.0
O19	C4	N3	H18	21.3	0.0
O19	C4	O5	N3	157.1	179.7
O5	C4	N3	C2	355.9	359.7
O5	C4	N3	H18	175.9	179.7
C4	O5	C1	C2	345.9	359.9
C4	O5	C1	C18	226.3	241.3
C4	O5	C1	C6	107.6	118.7
O19	C4	N3	O5	205.4	180.3
N3	C4	O5	C1	11.9	0.2
C4	N3	C2	C1	355.6	0.2
C4	N3	C2	H2	115.5	118.6
C2	N3	C4	H18	180.0	180.0
C4	N3	C2	H19	233.3	241.4
C1	O5	C4	N3	11.9	0.2
N3	C2	C1	O5	11.1	360.0
O5	C1	C2	H2	251.1	241.5
C2	C1	O5	C18	119.6	118.5
C2	C1	O5	C6	238.2	241.2
O5	C1	C2	H19	133.4	118.6
C18	C1	O5	C6	118.7	122.7
O5	C1	C18	H181	313.9	59.3
O5	C1	C18	H182	73.9	179.3
O5	C1	C18	H183	193.9	299.3
O5	C1	C6	C7	182.6	211.4
O5	C1	C6	C17	4.6	31.2
C4	N3	C2	H18	180.0	180.0
O5	C1	C2	N3	11.1	360.0
C1	C2	N3	H2	240.0	241.6
N3	C2	C1	C18	125.7	118.6
N3	C2	C1	C6	250.4	241.3
C1	C2	N3	H19	122.3	118.8
H2	C2	N3	H19	242.3	237.2
O5	C1	C2	C18	245.4	241.4
O5	C1	C2	C6	120.7	118.7
N3	C2	C1	H2	120.0	118.5
C1	C2	N3	H18	175.6	180.2
N3	C2	C1	H19	237.7	241.3
H2	C2	C1	H19	117.7	122.8
C18	C1	C2	C6	235.4	237.3
C2	C1	C18	H181	200.0	304.8
C2	C1	C18	H182	319.9	64.7
C2	C1	C18	H183	80.0	184.8
C2	C1	C6	C7	299.6	326.1
C2	C1	C6	C17	121.6	145.8
N3	C2	H2	C1	245.1	245.7
H2	C2	N3	H18	295.6	298.6
N3	C2	H2	H19	122.5	122.8
H2	C2	C1	C18	5.7	0.1
H2	C2	C1	C6	130.4	122.8
C1	C2	H2	H19	237.5	237.1
O5	C1	C18	C2	113.9	114.6
O5	C1	C18	C6	240.3	237.3
C18	C1	C2	H2	5.7	0.1
C2	C1	C18	C6	126.3	122.8
C18	C1	C2	H19	248.0	237.3
C18	C1	C6	C7	66.1	88.7
C18	C1	C6	C17	248.1	268.5
H181	C18	C1	H182	240.0	240.0
H181	C18	C1	H183	120.0	120.0
H182	C18	C1	H183	240.0	240.0
O5	C1	C6	C2	243.0	245.3
O5	C1	C6	C18	116.5	122.7
C6	C1	C2	H2	130.4	122.8
C2	C1	C6	C18	233.5	237.4
C6	C1	C2	H19	12.6	360.0
C6	C1	C18	H181	73.6	182.0
C6	C1	C18	H182	193.6	302.0
C6	C1	C18	H183	313.6	62.0
C7	C6	C1	C17	178.0	180.3
C1	C6	C7	C8	180.7	180.0
C1	C6	C7	H7	0.7	360.0
C1	C6	C17	C12	178.7	179.7
C1	C6	C17	H17	358.7	0.0
H181	C18	C1	C6	73.6	182.0
C1	C18	H181	H182	120.0	120.0
C1	C18	H181	H183	240.0	240.0
H182	C18	H181	H183	120.0	120.0
H182	C18	C1	C6	193.6	302.0
C1	C18	H182	H181	240.0	240.0
C1	C18	H182	H183	120.0	120.0
H181	C18	H182	H183	240.0	240.0
H183	C18	C1	C6	313.6	62.0
C1	C18	H183	H181	120.0	119.9
C1	C18	H183	H182	240.0	239.9
H181	C18	H183	H182	120.0	120.0
C1	C6	C7	C17	181.9	179.7
C7	C6	C17	C12	0.7	359.5
C7	C6	C17	H17	180.7	179.8
C8	C7	C6	H7	180.0	180.0
C6	C7	C8	C9	1.9	360.0
C6	C7	C8	H8	181.9	180.0
C1	C6	C17	C7	178.0	180.3
C17	C6	C7	C8	358.7	0.3
C17	C6	C7	H7	178.7	180.2
C9	C12	C17	C6	359.3	0.5
C6	C17	C12	O13	178.9	180.3
C12	C17	C6	H17	180.0	179.7
C8	C7	C6	C17	358.7	0.3
C6	C7	C8	H7	180.0	180.0
C9	C8	C7	H8	180.0	180.0
C7	C8	C9	O10	179.7	180.1
C7	C8	C9	C12	358.1	0.0
H7	C7	C6	C17	178.7	180.2
C6	C7	H7	C8	180.0	180.0
H7	C7	C8	C9	181.9	180.0
H7	C7	C8	H8	1.9	0.0
C9	C8	C7	H7	181.9	180.0
C7	C8	C9	H8	180.0	180.0
O10	C9	C8	C12	181.6	180.1
C8	C9	O10	C11	1.9	360.0
C8	C9	C12	C17	1.3	359.7
C8	C9	C12	O13	181.7	180.0
H8	C8	C7	H7	1.9	0.0
C7	C8	H8	C9	180.0	180.0
H8	C8	C9	O10	359.7	0.1
H8	C8	C9	C12	178.1	180.0
O10	C9	C8	H8	359.7	0.1
C8	C9	O10	C12	178.5	179.9
O10	C9	C12	C17	179.7	179.7
O10	C9	C12	O13	0.2	359.9
C9	O10	C11	H111	343.3	180.1
C9	O10	C11	H112	103.3	300.1
C9	O10	C11	H113	223.3	60.0
C6	C17	C12	C9	359.3	0.5
C12	C9	C8	H8	178.1	180.0
C8	C9	C12	O10	181.5	180.1
C12	C9	O10	C11	183.5	180.0
C17	C12	C9	O13	179.6	179.7
C9	C12	C17	H17	179.3	180.2
C9	C12	O13	C14	183.4	180.0
C11	O10	C9	C12	183.5	180.0
H111	C11	O10	H112	240.0	240.0
H111	C11	O10	H113	120.0	120.1
H112	C11	O10	H113	240.0	240.1
O10	C11	H111	H112	120.0	120.0
O10	C11	H111	H113	240.0	240.0
H112	C11	H111	H113	120.0	120.0
O10	C11	H112	H111	240.0	240.0
O10	C11	H112	H113	120.0	120.0
H111	C11	H112	H113	240.0	239.9
O10	C11	H113	H111	120.0	120.0
O10	C11	H113	H112	240.0	240.1
H111	C11	H113	H112	120.0	120.0
C6	C17	C12	H17	180.0	180.3
C9	C12	C17	O13	180.4	180.3
C17	C12	O13	C14	3.8	0.3
C9	C12	O13	C17	179.6	179.7
O13	C12	C17	H17	358.9	360.0
C12	O13	C14	C15	191.3	180.0
C12	O13	C14	H141	311.3	300.0
C12	O13	C14	H142	71.1	60.0
C6	C17	H17	C12	180.0	179.7
H17	C17	C12	O13	358.9	360.0
C15	C14	O13	H141	240.0	240.0
C15	C14	O13	H142	120.2	120.0
O13	C14	C15	C16	66.2	180.0
O13	C14	C15	H151	186.2	300.0
O13	C14	C15	H152	306.0	60.0
H141	C14	O13	H142	240.2	240.0
O13	C14	C15	H141	120.0	120.0
O13	C14	C15	H142	239.8	240.0
H141	C14	C15	H142	119.8	120.0
C16	C15	C14	H151	240.0	240.0
C16	C15	C14	H152	120.2	120.0
C14	C15	C16	H161	341.3	180.0
C14	C15	C16	H162	101.3	300.0
C14	C15	C16	H163	221.3	60.0
H151	C15	C14	H152	240.2	240.0
O13	C14	H141	C15	240.4	240.0
O13	C14	H141	H142	120.2	120.0
C15	C14	H141	H142	239.8	240.0
H141	C14	C15	C16	306.2	60.0
H141	C14	C15	H151	66.2	180.0
H141	C14	C15	H152	186.0	300.0
O13	C14	H142	C15	119.7	120.0
O13	C14	H142	H141	239.8	240.0
C15	C14	H142	H141	120.1	120.0
H142	C14	C15	C16	186.4	300.0
H142	C14	C15	H151	306.4	60.0
H142	C14	C15	H152	66.2	180.0
C16	C15	C14	H141	306.2	60.0
C16	C15	C14	H142	186.4	300.0
C14	C15	C16	H151	120.0	120.0
C14	C15	C16	H152	239.7	240.0
H151	C15	C16	H152	119.8	120.0
H161	C16	C15	H162	240.0	240.0
H161	C16	C15	H163	120.0	120.0
H162	C16	C15	H163	240.0	240.0
H151	C15	C14	H141	66.2	180.0
H151	C15	C14	H142	306.4	60.0
C14	C15	H151	C16	240.5	240.0
C14	C15	H151	H152	120.3	120.0
C16	C15	H151	H152	239.8	240.0
H151	C15	C16	H161	221.3	60.0
H151	C15	C16	H162	341.3	180.0
H151	C15	C16	H163	101.3	300.0
H152	C15	C14	H141	186.0	300.0
H152	C15	C14	H142	66.2	180.0
C14	C15	H152	C16	119.7	120.0
C14	C15	H152	H151	239.8	240.0
C16	C15	H152	H151	120.2	120.0
H152	C15	C16	H161	101.5	300.0
H152	C15	C16	H162	221.5	60.0
H152	C15	C16	H163	341.5	180.0
H161	C16	C15	H151	221.3	60.0
H161	C16	C15	H152	101.5	300.0
C15	C16	H161	H162	120.0	120.0
C15	C16	H161	H163	240.0	240.0
H162	C16	H161	H163	120.0	120.0
H162	C16	C15	H151	341.3	180.0
H162	C16	C15	H152	221.5	60.0
C15	C16	H162	H161	240.0	240.0
C15	C16	H162	H163	120.0	120.0
H161	C16	H162	H163	240.0	240.0
H163	C16	C15	H151	101.3	300.0
H163	C16	C15	H152	341.5	180.0
C15	C16	H163	H161	120.0	120.0
C15	C16	H163	H162	240.0	240.0
H161	C16	H163	H162	120.0	120.0
C4	N3	H18	C2	180.0	180.0
H18	N3	C2	C1	175.6	180.2
H18	N3	C2	H2	295.6	298.6
H18	N3	C2	H19	53.3	61.4
N3	C2	H19	C1	116.7	114.5
N3	C2	H19	H2	238.3	237.3
H19	C2	N3	H18	53.3	61.4
C1	C2	H19	H2	121.7	122.8
H19	C2	C1	C18	248.0	237.3
H19	C2	C1	C6	12.6	360.0