PDB Chemical Component 5RL
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5RL
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C13 |
N03 |
1.451 |
1.469 |
| C06 |
C04 |
1.490 |
1.527 |
| C06 |
C11 |
1.452 |
1.504 |
| N03 |
C04 |
1.448 |
1.470 |
| N03 |
C08 |
1.479 |
1.464 |
| C04 |
C05 |
1.478 |
1.506 |
| C08 |
C09 |
1.553 |
1.520 |
| C09 |
C07 |
1.499 |
1.502 |
| C16 |
C11 |
1.405 |
1.380 |
| C16 |
C20 |
1.380 |
1.384 |
| C11 |
C12 |
1.365 |
1.393 |
| C05 |
C07 |
1.334 |
1.378 |
| C05 |
C10 |
1.414 |
1.397 |
| C07 |
C14 |
1.390 |
1.390 |
| C20 |
C19 |
1.373 |
1.387 |
| C12 |
C10 |
1.427 |
1.482 |
| C12 |
C17 |
1.430 |
1.394 |
| C10 |
C15 |
1.389 |
1.390 |
| C14 |
C18 |
1.417 |
1.380 |
| C19 |
C17 |
1.388 |
1.390 |
| C19 |
O02 |
1.386 |
1.360 |
| C17 |
O01 |
1.382 |
1.360 |
| C15 |
C18 |
1.411 |
1.381 |
| C13 |
H1 |
1.100 |
1.090 |
| C13 |
H2 |
1.099 |
1.090 |
| C13 |
H3 |
1.100 |
1.090 |
| C14 |
H4 |
1.080 |
1.080 |
| C15 |
H5 |
1.080 |
1.080 |
| C16 |
H6 |
1.080 |
1.079 |
| C20 |
H7 |
1.080 |
1.080 |
| O01 |
H8 |
0.950 |
0.967 |
| O02 |
H9 |
0.950 |
0.967 |
| C08 |
H11 |
1.100 |
1.090 |
| C08 |
H12 |
1.100 |
1.089 |
| C09 |
H13 |
1.100 |
1.090 |
| C09 |
H14 |
1.100 |
1.090 |
| C18 |
H15 |
1.080 |
1.080 |
| C06 |
H10 |
1.100 |
1.090 |
| C06 |
H16 |
1.100 |
1.091 |
| C04 |
H17 |
1.101 |
1.090 |
Bond Angles for 5RL
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C13 |
N03 |
C04 |
126.3 |
111.0 |
| C13 |
N03 |
C08 |
113.4 |
111.0 |
| N03 |
C13 |
H1 |
109.5 |
109.5 |
| N03 |
C13 |
H2 |
109.5 |
109.5 |
| N03 |
C13 |
H3 |
109.5 |
109.4 |
| C06 |
C04 |
H17 |
96.2 |
108.9 |
| C04 |
N03 |
C08 |
120.3 |
110.6 |
| N03 |
C04 |
C05 |
118.1 |
109.2 |
| N03 |
C04 |
H17 |
96.4 |
109.4 |
| N03 |
C08 |
C09 |
116.8 |
110.9 |
| N03 |
C08 |
H11 |
107.6 |
109.2 |
| N03 |
C08 |
H12 |
107.6 |
109.3 |
| C04 |
C05 |
C07 |
117.1 |
120.8 |
| C05 |
C04 |
H17 |
96.2 |
109.3 |
| C09 |
C08 |
H11 |
107.6 |
109.2 |
| C09 |
C08 |
H12 |
107.6 |
109.2 |
| C08 |
C09 |
H13 |
109.6 |
108.9 |
| C08 |
C09 |
H14 |
109.6 |
108.9 |
| C16 |
C20 |
C19 |
118.3 |
120.4 |
| C20 |
C16 |
H6 |
119.9 |
119.9 |
| C16 |
C20 |
H7 |
120.9 |
119.8 |
| C11 |
C12 |
C17 |
116.1 |
120.0 |
| C07 |
C14 |
C18 |
116.4 |
120.9 |
| C07 |
C14 |
H4 |
121.8 |
119.6 |
| C20 |
C19 |
C17 |
121.8 |
120.0 |
| C20 |
C19 |
O02 |
120.2 |
120.0 |
| C12 |
C10 |
C15 |
120.2 |
120.4 |
| C12 |
C17 |
C19 |
120.6 |
119.6 |
| C12 |
C17 |
O01 |
126.4 |
120.2 |
| C10 |
C15 |
C18 |
119.9 |
119.7 |
| C10 |
C15 |
H5 |
120.0 |
120.2 |
| C14 |
C18 |
C15 |
121.6 |
119.9 |
| C18 |
C14 |
H4 |
121.8 |
119.5 |
| C14 |
C18 |
H15 |
119.3 |
120.0 |
| O02 |
C19 |
C17 |
118.0 |
120.1 |
| C19 |
C17 |
O01 |
113.0 |
120.2 |
| C19 |
O02 |
H9 |
109.5 |
114.0 |
| C17 |
O01 |
H8 |
109.5 |
114.0 |
| C18 |
C15 |
H5 |
120.0 |
120.2 |
| C15 |
C18 |
H15 |
119.2 |
120.1 |
| H1 |
C13 |
H2 |
109.4 |
109.5 |
| H1 |
C13 |
H3 |
109.5 |
109.5 |
| H2 |
C13 |
H3 |
109.5 |
109.5 |
| H11 |
C08 |
H12 |
109.5 |
109.2 |
| H13 |
C09 |
H14 |
109.5 |
108.7 |
| H10 |
C06 |
H16 |
109.5 |
109.2 |
Torsion Angles for 5RL
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C04 |
N03 |
C13 |
C08 |
179.4 |
123.5 |
| C13 |
N03 |
C04 |
C05 |
165.8 |
177.9 |
| C13 |
N03 |
C04 |
H17 |
266.4 |
297.4 |
| C13 |
N03 |
C08 |
C09 |
165.3 |
190.1 |
| C13 |
N03 |
C08 |
H11 |
286.4 |
310.4 |
| C13 |
N03 |
C08 |
H12 |
44.2 |
69.7 |
| H1 |
C13 |
N03 |
H2 |
240.0 |
240.0 |
| H1 |
C13 |
N03 |
H3 |
120.0 |
120.0 |
| H2 |
C13 |
N03 |
H3 |
240.0 |
240.0 |
| C06 |
C04 |
N03 |
C08 |
186.7 |
180.1 |
| N03 |
C04 |
C06 |
H17 |
259.0 |
240.7 |
| C06 |
C04 |
C05 |
C07 |
181.5 |
145.4 |
| C05 |
C04 |
C06 |
H17 |
100.6 |
120.3 |
| C06 |
C11 |
C12 |
C17 |
180.2 |
182.4 |
| C13 |
N03 |
C04 |
C08 |
180.6 |
236.3 |
| C04 |
N03 |
C13 |
H1 |
180.0 |
60.0 |
| C04 |
N03 |
C13 |
H2 |
300.0 |
180.0 |
| C04 |
N03 |
C13 |
H3 |
60.0 |
300.0 |
| C06 |
C04 |
N03 |
H17 |
100.9 |
119.0 |
| C04 |
N03 |
C08 |
C09 |
345.9 |
66.5 |
| C04 |
N03 |
C08 |
H11 |
106.9 |
186.8 |
| C04 |
N03 |
C08 |
H12 |
224.8 |
306.1 |
| N03 |
C04 |
C05 |
C07 |
22.8 |
25.1 |
| C05 |
C04 |
N03 |
H17 |
259.4 |
240.5 |
| C13 |
N03 |
C08 |
C04 |
179.5 |
123.7 |
| C08 |
N03 |
C13 |
H1 |
0.6 |
296.5 |
| C08 |
N03 |
C13 |
H2 |
120.6 |
56.5 |
| C08 |
N03 |
C13 |
H3 |
240.6 |
176.5 |
| C08 |
N03 |
C04 |
C05 |
345.2 |
301.6 |
| C08 |
N03 |
C04 |
H17 |
85.8 |
61.1 |
| C09 |
C08 |
N03 |
H11 |
238.9 |
239.7 |
| C09 |
C08 |
N03 |
H12 |
121.1 |
120.4 |
| N03 |
C08 |
C09 |
H13 |
152.2 |
201.8 |
| N03 |
C08 |
C09 |
H14 |
272.4 |
83.4 |
| H11 |
C08 |
N03 |
H12 |
242.1 |
240.7 |
| C06 |
C04 |
C05 |
H17 |
259.4 |
239.9 |
| C05 |
C04 |
N03 |
C08 |
345.2 |
301.6 |
| N03 |
C04 |
C05 |
H17 |
100.7 |
119.6 |
| N03 |
C08 |
C09 |
H11 |
121.1 |
120.3 |
| N03 |
C08 |
C09 |
H12 |
238.9 |
239.6 |
| H11 |
C08 |
C09 |
H12 |
117.9 |
119.3 |
| H13 |
C09 |
C08 |
H14 |
239.8 |
118.4 |
| N03 |
C08 |
C09 |
C07 |
32.3 |
322.7 |
| C09 |
C07 |
C14 |
C18 |
180.6 |
178.0 |
| C09 |
C07 |
C14 |
H4 |
0.6 |
358.0 |
| C16 |
C11 |
C12 |
C17 |
0.0 |
1.1 |
| C16 |
C20 |
C19 |
C17 |
359.6 |
0.4 |
| C16 |
C20 |
C19 |
O02 |
180.7 |
180.4 |
| C11 |
C12 |
C10 |
C15 |
179.3 |
196.4 |
| C11 |
C12 |
C17 |
C19 |
359.8 |
359.3 |
| C11 |
C12 |
C17 |
O01 |
179.5 |
179.3 |
| C07 |
C05 |
C04 |
H17 |
282.1 |
265.5 |
| C05 |
C07 |
C14 |
C18 |
0.3 |
358.9 |
| C05 |
C07 |
C14 |
H4 |
180.3 |
179.0 |
| C05 |
C10 |
C15 |
C18 |
359.9 |
358.7 |
| C05 |
C10 |
C15 |
H5 |
180.0 |
178.7 |
| C07 |
C14 |
C18 |
C15 |
359.5 |
0.5 |
| C18 |
C14 |
C07 |
H4 |
180.0 |
180.0 |
| C07 |
C14 |
C18 |
H15 |
179.5 |
180.5 |
| C19 |
C20 |
C16 |
H6 |
180.2 |
180.0 |
| C16 |
C20 |
C19 |
H7 |
180.0 |
180.0 |
| C12 |
C17 |
C19 |
C20 |
0.4 |
359.9 |
| O02 |
C19 |
C20 |
C17 |
181.1 |
180.0 |
| C20 |
C19 |
C17 |
O01 |
180.7 |
180.0 |
| C20 |
C19 |
O02 |
H9 |
180.0 |
269.9 |
| C12 |
C10 |
C15 |
C18 |
179.9 |
179.5 |
| C12 |
C10 |
C15 |
H5 |
360.0 |
359.5 |
| C20 |
C19 |
C17 |
C12 |
0.4 |
359.9 |
| C17 |
C12 |
C10 |
C15 |
359.4 |
16.8 |
| O02 |
C19 |
C17 |
C12 |
179.3 |
179.9 |
| C19 |
C17 |
C12 |
O01 |
180.3 |
180.1 |
| C12 |
C17 |
O01 |
H8 |
180.0 |
90.0 |
| C14 |
C18 |
C15 |
C10 |
0.4 |
0.7 |
| C18 |
C15 |
C10 |
H5 |
180.0 |
180.0 |
| C10 |
C15 |
C18 |
H15 |
180.4 |
180.7 |
| C07 |
C14 |
C18 |
H4 |
180.0 |
180.0 |
| C10 |
C15 |
C18 |
C14 |
0.4 |
0.7 |
| C14 |
C18 |
C15 |
H5 |
180.3 |
180.7 |
| C15 |
C18 |
C14 |
H15 |
180.0 |
180.0 |
| C20 |
C19 |
C17 |
O02 |
181.1 |
180.0 |
| C12 |
C17 |
C19 |
O01 |
179.7 |
179.9 |
| C17 |
C19 |
O02 |
H9 |
1.1 |
89.9 |
| C19 |
C17 |
O01 |
H8 |
359.7 |
269.9 |
| C20 |
C19 |
O02 |
C17 |
178.9 |
180.0 |
| C12 |
C17 |
C19 |
O02 |
179.3 |
179.9 |
| O02 |
C19 |
C17 |
O01 |
359.6 |
360.0 |
| C12 |
C17 |
O01 |
C19 |
180.3 |
180.1 |
| C10 |
C15 |
C18 |
H5 |
180.0 |
180.0 |
| C15 |
C18 |
C14 |
H4 |
179.5 |
180.4 |
| C14 |
C18 |
C15 |
H15 |
180.0 |
180.0 |
| H1 |
C13 |
N03 |
C04 |
180.0 |
60.0 |
| H1 |
C13 |
N03 |
C08 |
0.6 |
296.5 |
| N03 |
C13 |
H1 |
H2 |
120.0 |
120.0 |
| N03 |
C13 |
H1 |
H3 |
240.0 |
240.0 |
| H2 |
C13 |
H1 |
H3 |
120.0 |
120.0 |
| H2 |
C13 |
N03 |
C04 |
300.0 |
180.0 |
| H2 |
C13 |
N03 |
C08 |
120.6 |
56.5 |
| N03 |
C13 |
H2 |
H1 |
240.0 |
240.0 |
| N03 |
C13 |
H2 |
H3 |
120.0 |
120.0 |
| H1 |
C13 |
H2 |
H3 |
240.0 |
240.0 |
| H3 |
C13 |
N03 |
C04 |
60.0 |
300.0 |
| H3 |
C13 |
N03 |
C08 |
240.6 |
176.5 |
| N03 |
C13 |
H3 |
H1 |
120.0 |
120.0 |
| N03 |
C13 |
H3 |
H2 |
240.0 |
240.0 |
| H1 |
C13 |
H3 |
H2 |
120.0 |
120.0 |
| C07 |
C14 |
H4 |
C18 |
180.0 |
180.0 |
| H4 |
C14 |
C18 |
C15 |
179.5 |
180.4 |
| H4 |
C14 |
C18 |
H15 |
359.5 |
0.4 |
| C10 |
C15 |
H5 |
C18 |
180.0 |
180.0 |
| H5 |
C15 |
C18 |
H15 |
0.4 |
0.7 |
| H6 |
C16 |
C20 |
C19 |
180.2 |
180.0 |
| H6 |
C16 |
C20 |
H7 |
0.2 |
360.0 |
| C16 |
C20 |
H7 |
C19 |
180.0 |
180.0 |
| H7 |
C20 |
C16 |
H6 |
0.2 |
360.0 |
| H7 |
C20 |
C19 |
C17 |
179.6 |
180.4 |
| H7 |
C20 |
C19 |
O02 |
0.8 |
0.4 |
| H9 |
O02 |
C19 |
C17 |
1.1 |
89.9 |
| N03 |
C08 |
H11 |
C09 |
233.3 |
238.7 |
| N03 |
C08 |
H11 |
H12 |
116.7 |
119.4 |
| C09 |
C08 |
H11 |
H12 |
243.3 |
240.7 |
| H11 |
C08 |
C09 |
H13 |
31.1 |
81.5 |
| H11 |
C08 |
C09 |
H14 |
151.3 |
323.1 |
| N03 |
C08 |
H12 |
C09 |
126.7 |
121.4 |
| N03 |
C08 |
H12 |
H11 |
243.3 |
240.7 |
| C09 |
C08 |
H12 |
H11 |
116.7 |
119.3 |
| H12 |
C08 |
C09 |
H13 |
273.2 |
322.3 |
| H12 |
C08 |
C09 |
H14 |
33.5 |
203.8 |
| H13 |
C09 |
C08 |
H11 |
31.1 |
81.5 |
| H13 |
C09 |
C08 |
H12 |
273.2 |
322.3 |
| C08 |
C09 |
H13 |
H14 |
120.3 |
241.5 |
| H14 |
C09 |
C08 |
H11 |
151.3 |
323.1 |
| H14 |
C09 |
C08 |
H12 |
33.5 |
203.8 |
| C08 |
C09 |
H14 |
H13 |
239.7 |
118.6 |
| C14 |
C18 |
H15 |
C15 |
180.0 |
180.0 |
| H15 |
C18 |
C14 |
H4 |
359.5 |
0.4 |
| H15 |
C18 |
C15 |
H5 |
0.4 |
0.7 |
| H10 |
C06 |
C04 |
H17 |
18.2 |
171.0 |
| H16 |
C06 |
C04 |
H17 |
136.7 |
51.6 |
| H17 |
C04 |
N03 |
C08 |
85.8 |
61.1 |
| N03 |
C04 |
H17 |
C05 |
240.7 |
240.5 |
| H17 |
C04 |
C05 |
C07 |
282.1 |
265.5 |