PDB Chemical Component 5R8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5R8
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N36 |
C35 |
1.469 |
1.469 |
C35 |
C28 |
1.513 |
1.507 |
C28 |
C27 |
1.434 |
1.383 |
C28 |
C29 |
1.424 |
1.383 |
C27 |
C26 |
1.415 |
1.382 |
C29 |
C30 |
1.412 |
1.382 |
C26 |
C23 |
1.428 |
1.382 |
C30 |
C23 |
1.437 |
1.382 |
C23 |
C22 |
1.533 |
1.507 |
C7 |
C6 |
1.556 |
1.460 |
C7 |
N8 |
1.505 |
1.481 |
C6 |
N2 |
1.485 |
1.481 |
C1 |
N2 |
1.472 |
1.469 |
C22 |
N8 |
1.500 |
1.469 |
N8 |
C9 |
1.481 |
1.441 |
N2 |
C11 |
1.498 |
1.441 |
C9 |
C10 |
1.526 |
1.544 |
C11 |
C10 |
1.539 |
1.543 |
C6 |
H1 |
1.100 |
1.090 |
C6 |
H2 |
1.100 |
1.090 |
C1 |
H3 |
1.100 |
1.090 |
C1 |
H4 |
1.099 |
1.090 |
C1 |
H5 |
1.100 |
1.090 |
C7 |
H7 |
1.100 |
1.090 |
C7 |
H8 |
1.100 |
1.090 |
C9 |
H10 |
1.100 |
1.090 |
C9 |
H11 |
1.100 |
1.091 |
C10 |
H12 |
1.100 |
1.090 |
C10 |
H13 |
1.100 |
1.090 |
C11 |
H14 |
1.100 |
1.090 |
C11 |
H15 |
1.100 |
1.090 |
C22 |
H16 |
1.100 |
1.090 |
C22 |
H17 |
1.100 |
1.090 |
C26 |
H18 |
1.080 |
1.080 |
C27 |
H19 |
1.080 |
1.080 |
C29 |
H20 |
1.080 |
1.080 |
C30 |
H21 |
1.080 |
1.080 |
C35 |
H22 |
1.100 |
1.090 |
C35 |
H23 |
1.100 |
1.090 |
N36 |
H24 |
1.001 |
1.009 |
N36 |
H25 |
1.000 |
1.009 |
Bond Angles for 5R8
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
N36 |
C35 |
H22 |
108.7 |
109.5 |
N36 |
C35 |
H23 |
108.7 |
109.5 |
C28 |
C27 |
H19 |
119.9 |
120.0 |
C28 |
C29 |
C30 |
120.4 |
120.0 |
C28 |
C29 |
H20 |
119.8 |
120.0 |
C27 |
C26 |
H18 |
119.7 |
120.0 |
C30 |
C29 |
H20 |
119.8 |
120.0 |
C29 |
C30 |
H21 |
119.7 |
120.0 |
C23 |
C22 |
H16 |
107.0 |
109.5 |
C23 |
C22 |
H17 |
107.0 |
109.5 |
C7 |
C6 |
H1 |
108.1 |
108.9 |
C7 |
C6 |
H2 |
108.1 |
108.9 |
C7 |
N8 |
C9 |
116.2 |
109.9 |
N8 |
C7 |
H7 |
107.4 |
109.0 |
N8 |
C7 |
H8 |
107.4 |
108.9 |
C6 |
N2 |
C1 |
116.6 |
111.0 |
C6 |
N2 |
C11 |
116.7 |
109.9 |
N2 |
C6 |
H1 |
108.1 |
108.9 |
N2 |
C6 |
H2 |
108.1 |
109.0 |
C1 |
N2 |
C11 |
117.8 |
111.0 |
N2 |
C1 |
H3 |
109.5 |
109.5 |
N2 |
C1 |
H4 |
109.5 |
109.5 |
N2 |
C1 |
H5 |
109.5 |
109.5 |
N8 |
C9 |
C10 |
111.4 |
112.6 |
N8 |
C9 |
H10 |
109.0 |
108.9 |
N8 |
C9 |
H11 |
109.0 |
108.9 |
N2 |
C11 |
C10 |
116.8 |
112.6 |
N2 |
C11 |
H14 |
107.6 |
108.9 |
N2 |
C11 |
H15 |
107.6 |
108.9 |
C10 |
C9 |
H10 |
109.0 |
108.8 |
C10 |
C9 |
H11 |
109.0 |
108.8 |
C9 |
C10 |
H12 |
108.7 |
109.0 |
C9 |
C10 |
H13 |
108.7 |
109.0 |
C11 |
C10 |
H12 |
108.7 |
109.1 |
C11 |
C10 |
H13 |
108.7 |
109.0 |
H1 |
C6 |
H2 |
109.4 |
108.9 |
H3 |
C1 |
H4 |
109.5 |
109.5 |
H3 |
C1 |
H5 |
109.5 |
109.5 |
H4 |
C1 |
H5 |
109.4 |
109.4 |
H7 |
C7 |
H8 |
109.5 |
108.8 |
H10 |
C9 |
H11 |
109.5 |
108.7 |
H12 |
C10 |
H13 |
109.5 |
109.0 |
H14 |
C11 |
H15 |
109.5 |
108.7 |
H16 |
C22 |
H17 |
109.5 |
109.5 |
H22 |
C35 |
H23 |
109.5 |
109.5 |
H24 |
N36 |
H25 |
109.5 |
111.0 |
Torsion Angles for 5R8
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
H22 |
C35 |
N36 |
H23 |
240.9 |
120.0 |
C35 |
C28 |
C27 |
H19 |
0.0 |
0.0 |
C35 |
C28 |
C29 |
H20 |
359.9 |
359.9 |
C28 |
C27 |
C26 |
H18 |
180.4 |
180.0 |
C29 |
C28 |
C27 |
H19 |
179.8 |
180.0 |
C30 |
C29 |
C28 |
H20 |
180.0 |
179.8 |
C28 |
C29 |
C30 |
H21 |
179.7 |
180.0 |
C28 |
C29 |
C30 |
H20 |
180.0 |
180.2 |
C26 |
C23 |
C22 |
H16 |
22.4 |
330.0 |
C26 |
C23 |
C22 |
H17 |
139.7 |
210.0 |
C30 |
C23 |
C22 |
H16 |
202.8 |
149.8 |
C30 |
C23 |
C22 |
H17 |
320.1 |
29.8 |
H16 |
C22 |
C23 |
H17 |
242.7 |
120.0 |
C7 |
C6 |
N2 |
C11 |
81.7 |
279.7 |
N2 |
C6 |
C7 |
H1 |
239.2 |
120.7 |
N2 |
C6 |
C7 |
H2 |
120.8 |
239.3 |
H1 |
C6 |
C7 |
H2 |
241.6 |
118.7 |
N8 |
C7 |
C6 |
H1 |
69.5 |
300.0 |
N8 |
C7 |
C6 |
H2 |
187.9 |
181.3 |
C7 |
N8 |
C9 |
C10 |
84.3 |
94.3 |
C7 |
N8 |
C9 |
H10 |
204.6 |
215.1 |
C7 |
N8 |
C9 |
H11 |
324.0 |
333.5 |
H7 |
C7 |
N8 |
H8 |
117.7 |
118.6 |
C7 |
C6 |
N2 |
H1 |
120.8 |
239.3 |
C7 |
C6 |
N2 |
H2 |
239.2 |
120.6 |
C1 |
N2 |
C6 |
C11 |
213.4 |
236.9 |
C6 |
N2 |
C1 |
H3 |
180.0 |
60.0 |
C6 |
N2 |
C1 |
H4 |
300.0 |
180.0 |
C6 |
N2 |
C1 |
H5 |
60.0 |
300.0 |
C6 |
N2 |
C11 |
C10 |
297.0 |
94.4 |
C6 |
N2 |
C11 |
H14 |
58.1 |
215.2 |
C6 |
N2 |
C11 |
H15 |
176.0 |
333.5 |
H1 |
C6 |
N2 |
H2 |
118.4 |
241.3 |
C6 |
N2 |
C1 |
C11 |
146.2 |
122.5 |
C1 |
N2 |
C6 |
H1 |
174.4 |
277.2 |
C1 |
N2 |
C6 |
H2 |
55.9 |
35.9 |
C1 |
N2 |
C11 |
C10 |
83.2 |
217.5 |
C1 |
N2 |
C11 |
H14 |
204.3 |
338.3 |
C1 |
N2 |
C11 |
H15 |
322.2 |
96.7 |
H3 |
C1 |
N2 |
H4 |
240.0 |
240.0 |
H3 |
C1 |
N2 |
H5 |
120.0 |
120.0 |
H4 |
C1 |
N2 |
H5 |
240.0 |
240.1 |
C22 |
N8 |
C7 |
H7 |
73.7 |
35.7 |
C22 |
N8 |
C7 |
H8 |
316.0 |
277.1 |
C22 |
N8 |
C9 |
H10 |
348.8 |
338.3 |
C22 |
N8 |
C9 |
H11 |
108.2 |
96.7 |
C9 |
N8 |
C7 |
H7 |
216.3 |
158.9 |
C9 |
N8 |
C7 |
H8 |
98.6 |
40.4 |
C10 |
C9 |
N8 |
H10 |
239.7 |
239.2 |
C10 |
C9 |
N8 |
H11 |
120.3 |
120.8 |
N8 |
C9 |
C10 |
H12 |
38.3 |
79.5 |
N8 |
C9 |
C10 |
H13 |
157.3 |
198.4 |
H10 |
C9 |
N8 |
H11 |
240.6 |
241.6 |
C6 |
N2 |
C11 |
C1 |
213.8 |
236.9 |
C11 |
N2 |
C6 |
H1 |
321.0 |
40.3 |
C11 |
N2 |
C6 |
H2 |
202.5 |
159.0 |
C11 |
N2 |
C1 |
H3 |
33.8 |
297.5 |
C11 |
N2 |
C1 |
H4 |
153.8 |
57.5 |
C11 |
N2 |
C1 |
H5 |
273.7 |
177.4 |
N2 |
C11 |
C10 |
H12 |
295.4 |
198.3 |
N2 |
C11 |
C10 |
H13 |
176.3 |
79.4 |
H14 |
C11 |
N2 |
H15 |
242.1 |
241.6 |
N8 |
C9 |
C10 |
H10 |
120.3 |
120.8 |
N8 |
C9 |
C10 |
H11 |
239.7 |
239.2 |
N2 |
C11 |
C10 |
C9 |
55.9 |
318.9 |
C11 |
C10 |
C9 |
H12 |
239.5 |
239.4 |
C11 |
C10 |
C9 |
H13 |
120.5 |
120.5 |
H10 |
C9 |
C10 |
H11 |
119.4 |
118.4 |
H12 |
C10 |
C9 |
H13 |
241.0 |
241.1 |
N2 |
C11 |
C10 |
H14 |
121.1 |
120.8 |
N2 |
C11 |
C10 |
H15 |
238.9 |
239.1 |
C11 |
C10 |
C9 |
H10 |
157.5 |
198.1 |
C11 |
C10 |
C9 |
H11 |
38.1 |
79.7 |
C9 |
C10 |
C11 |
H12 |
120.4 |
120.5 |
C9 |
C10 |
C11 |
H13 |
239.5 |
239.5 |
H12 |
C10 |
C11 |
H13 |
119.1 |
118.9 |
C7 |
C6 |
H1 |
H2 |
117.6 |
241.3 |
H1 |
C6 |
N2 |
C1 |
174.4 |
277.2 |
H1 |
C6 |
N2 |
C11 |
321.0 |
40.3 |
N2 |
C6 |
H1 |
H2 |
242.4 |
118.7 |
C7 |
C6 |
H2 |
H1 |
242.5 |
118.7 |
H2 |
C6 |
N2 |
C1 |
55.9 |
35.9 |
H2 |
C6 |
N2 |
C11 |
202.5 |
159.0 |
N2 |
C6 |
H2 |
H1 |
117.6 |
241.3 |
H3 |
C1 |
N2 |
C11 |
33.8 |
297.5 |
N2 |
C1 |
H3 |
H4 |
120.0 |
120.1 |
N2 |
C1 |
H3 |
H5 |
240.0 |
240.0 |
H4 |
C1 |
H3 |
H5 |
120.0 |
119.9 |
H4 |
C1 |
N2 |
C11 |
153.8 |
57.5 |
N2 |
C1 |
H4 |
H3 |
239.9 |
239.9 |
N2 |
C1 |
H4 |
H5 |
120.0 |
120.0 |
H3 |
C1 |
H4 |
H5 |
240.0 |
240.0 |
H5 |
C1 |
N2 |
C11 |
273.7 |
177.4 |
N2 |
C1 |
H5 |
H3 |
120.1 |
120.1 |
N2 |
C1 |
H5 |
H4 |
240.0 |
240.0 |
H3 |
C1 |
H5 |
H4 |
120.0 |
120.0 |
H7 |
C7 |
C6 |
H1 |
190.7 |
60.7 |
H7 |
C7 |
C6 |
H2 |
309.1 |
302.0 |
H7 |
C7 |
N8 |
C9 |
216.3 |
158.9 |
N8 |
C7 |
H7 |
H8 |
243.7 |
241.4 |
H8 |
C7 |
C6 |
H1 |
308.4 |
179.3 |
H8 |
C7 |
C6 |
H2 |
66.7 |
60.6 |
H8 |
C7 |
N8 |
C9 |
98.6 |
40.4 |
N8 |
C7 |
H8 |
H7 |
116.3 |
118.7 |
N8 |
C9 |
H10 |
C10 |
238.2 |
236.9 |
N8 |
C9 |
H10 |
H11 |
119.1 |
118.5 |
C10 |
C9 |
H10 |
H11 |
240.9 |
241.6 |
H10 |
C9 |
C10 |
H12 |
278.0 |
318.7 |
H10 |
C9 |
C10 |
H13 |
37.0 |
77.6 |
N8 |
C9 |
H11 |
C10 |
121.8 |
123.1 |
N8 |
C9 |
H11 |
H10 |
240.9 |
241.5 |
C10 |
C9 |
H11 |
H10 |
119.1 |
118.4 |
H11 |
C9 |
C10 |
H12 |
158.6 |
200.3 |
H11 |
C9 |
C10 |
H13 |
277.6 |
319.2 |
H12 |
C10 |
C9 |
H10 |
278.0 |
318.7 |
H12 |
C10 |
C9 |
H11 |
158.6 |
200.3 |
C9 |
C10 |
H12 |
H13 |
118.5 |
118.9 |
C11 |
C10 |
H12 |
H13 |
241.4 |
241.1 |
H13 |
C10 |
C9 |
H10 |
37.0 |
77.6 |
H13 |
C10 |
C9 |
H11 |
277.6 |
319.2 |
C9 |
C10 |
H13 |
H12 |
241.5 |
241.1 |
C11 |
C10 |
H13 |
H12 |
118.6 |
119.0 |
N2 |
C11 |
H14 |
C10 |
233.3 |
236.9 |
N2 |
C11 |
H14 |
H15 |
116.6 |
118.5 |
H14 |
C11 |
C10 |
H12 |
174.4 |
77.5 |
H14 |
C11 |
C10 |
H13 |
55.3 |
318.6 |
N2 |
C11 |
H15 |
C10 |
126.7 |
123.1 |
N2 |
C11 |
H15 |
H14 |
243.4 |
241.5 |
H15 |
C11 |
C10 |
H12 |
56.5 |
319.2 |
H15 |
C11 |
C10 |
H13 |
297.4 |
200.3 |
C23 |
C22 |
H16 |
H17 |
115.7 |
240.0 |
C23 |
C22 |
H17 |
H16 |
244.3 |
120.0 |
H19 |
C27 |
C26 |
H18 |
0.4 |
359.9 |
C28 |
C29 |
H20 |
C30 |
180.0 |
179.8 |
H20 |
C29 |
C30 |
H21 |
359.7 |
359.8 |
H21 |
C30 |
C29 |
H20 |
359.7 |
359.8 |
N36 |
C35 |
H22 |
H23 |
118.6 |
240.0 |
N36 |
C35 |
H23 |
H22 |
241.4 |
120.0 |
H24 |
N36 |
C35 |
H22 |
300.5 |
60.0 |
H24 |
N36 |
C35 |
H23 |
59.6 |
300.0 |
H25 |
N36 |
C35 |
H22 |
60.5 |
183.9 |
H25 |
N36 |
C35 |
H23 |
179.6 |
64.0 |