PDB Chemical Component 5R1

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5R1

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C01	O02	1.393	1.429
O02	C03	1.395	1.357
C03	C04	1.404	1.385
C03	C27	1.402	1.403
C04	C05	1.401	1.393
C05	C06	1.391	1.480
C05	C25	1.403	1.398
C06	N07	1.338	1.327
C06	C23	1.401	1.404
N07	C08	1.339	1.329
C08	C09	1.392	1.483
C08	C21	1.399	1.395
C09	C10	1.409	1.394
C09	C20	1.407	1.394
C10	C11	1.402	1.384
C11	O12	1.406	1.360
C11	C14	1.400	1.390
O12	C13	1.403	1.429
C14	O15	1.394	1.361
C14	C17	1.403	1.391
O15	C16	1.406	1.429
C17	O18	1.398	1.360
C17	C20	1.405	1.384
O18	C19	1.398	1.429
C21	N22	1.342	1.321
N22	C23	1.343	1.327
C23	N24	1.448	1.387
C25	C26	1.402	1.364
C26	C27	1.401	1.399
C27	C28	1.532	1.473
C28	O29	1.185	1.215
C28	O30	1.400	1.348
C01	H011	1.100	1.090
C01	H012	1.100	1.091
C01	H013	1.100	1.090
C04	H04	1.080	1.080
C25	H25	1.080	1.081
C21	H21	1.080	1.079
C10	H10	1.080	1.080
C20	H20	1.080	1.080
C13	H131	1.100	1.090
C13	H132	1.100	1.090
C13	H133	1.100	1.090
C16	H161	1.100	1.090
C16	H162	1.100	1.091
C16	H163	1.100	1.089
C19	H191	1.100	1.090
C19	H192	1.100	1.090
C19	H193	1.100	1.090
N24	H241	1.000	0.970
N24	H242	1.000	0.970
C26	H26	1.080	1.080
O30	H30	0.950	0.967

Bond Angles for 5R1

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	119.5	117.0
O02	C01	H011	109.5	109.5
O02	C01	H012	109.4	109.5
O02	C01	H013	109.5	109.4
O02	C03	C04	119.7	120.2
O02	C03	C27	119.6	120.1
C04	C03	C27	120.7	119.7
C03	C04	C05	119.5	119.8
C03	C04	H04	120.3	120.1
C03	C27	C26	119.8	119.9
C03	C27	C28	120.6	120.1
C04	C05	C06	121.3	119.9
C04	C05	C25	119.7	120.1
C05	C04	H04	120.2	120.1
C06	C05	C25	118.9	119.9
C05	C06	N07	118.5	120.1
C05	C06	C23	122.5	120.1
C05	C25	C26	120.7	120.3
C05	C25	H25	119.6	119.8
N07	C06	C23	119.0	119.8
C06	N07	C08	121.8	119.9
C06	C23	N22	119.4	119.9
C06	C23	N24	120.8	120.0
N07	C08	C09	118.8	120.0
N07	C08	C21	119.2	120.1
C09	C08	C21	121.9	119.9
C08	C09	C10	118.4	120.0
C08	C09	C20	121.4	120.0
C08	C21	N22	119.3	120.2
C08	C21	H21	120.3	119.9
C10	C09	C20	120.2	120.0
C09	C10	C11	120.4	120.0
C09	C10	H10	119.8	120.0
C09	C20	C17	119.3	119.9
C09	C20	H20	120.4	120.0
C10	C11	O12	122.2	120.0
C10	C11	C14	119.1	120.0
C11	C10	H10	119.8	120.0
O12	C11	C14	118.7	120.0
C11	O12	C13	121.3	117.0
C11	C14	O15	118.4	120.0
C11	C14	C17	121.0	120.1
O12	C13	H131	109.5	109.4
O12	C13	H132	109.5	109.5
O12	C13	H133	109.5	109.5
O15	C14	C17	120.6	119.9
C14	O15	C16	117.2	117.0
C14	C17	O18	118.9	120.0
C14	C17	C20	120.0	120.0
O15	C16	H161	109.5	109.5
O15	C16	H162	109.4	109.5
O15	C16	H163	109.4	109.5
O18	C17	C20	121.0	120.0
C17	O18	C19	120.7	117.0
C17	C20	H20	120.3	120.0
O18	C19	H191	109.5	109.4
O18	C19	H192	109.5	109.5
O18	C19	H193	109.5	109.5
C21	N22	C23	121.3	120.1
N22	C21	H21	120.3	119.9
N22	C23	N24	119.8	120.0
C23	N24	H241	109.5	120.0
C23	N24	H242	109.4	120.0
C25	C26	C27	119.6	120.2
C26	C25	H25	119.6	119.9
C25	C26	H26	120.2	119.9
C26	C27	C28	119.7	120.1
C27	C26	H26	120.2	120.0
C27	C28	O29	120.7	120.0
C27	C28	O30	119.7	120.0
O29	C28	O30	119.7	120.0
C28	O30	H30	109.5	117.0
H011	C01	H012	109.4	109.5
H011	C01	H013	109.5	109.5
H012	C01	H013	109.5	109.4
H131	C13	H132	109.5	109.5
H131	C13	H133	109.4	109.5
H132	C13	H133	109.5	109.5
H161	C16	H162	109.4	109.5
H161	C16	H163	109.5	109.5
H162	C16	H163	109.5	109.4
H191	C19	H192	109.5	109.5
H191	C19	H193	109.4	109.4
H192	C19	H193	109.5	109.5
H241	N24	H242	109.5	120.0

Torsion Angles for 5R1

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C01	O02	C03	C04	52.3	0.1
C01	O02	C03	C27	230.3	179.7
H011	C01	O02	H012	240.0	240.0
H011	C01	O02	H013	120.0	120.0
H012	C01	O02	H013	240.0	240.0
C03	O02	C01	H011	293.1	299.9
C03	O02	C01	H012	53.1	60.0
C03	O02	C01	H013	173.1	179.9
C04	C03	O02	C27	182.0	180.4
O02	C03	C04	C05	178.4	179.9
O02	C03	C04	H04	358.4	359.9
O02	C03	C27	C26	181.9	179.8
O02	C03	C27	C28	1.8	0.1
O02	C03	C04	C27	178.0	179.6
C04	C03	C27	C26	359.9	359.4
C04	C03	C27	C28	179.7	179.7
C03	C04	C05	C06	180.4	180.0
C03	C04	C05	C25	359.4	0.0
C05	C04	C03	H04	180.0	180.0
O02	C03	C27	C04	182.0	180.4
C27	C03	C04	C05	0.5	0.3
C27	C03	C04	H04	180.4	180.3
C25	C26	C27	C03	0.0	0.5
C26	C27	C03	C28	180.1	179.7
C03	C27	C26	H26	180.0	180.3
C03	C27	C28	O29	2.1	359.9
C03	C27	C28	O30	181.0	179.9
C05	C04	C03	C27	0.5	0.3
C03	C04	C05	H04	180.0	180.0
C06	C05	C04	C25	181.1	180.0
C04	C05	C06	N07	125.3	44.2
C04	C05	C06	C23	302.5	223.9
C04	C05	C25	C26	0.5	359.9
C04	C05	C25	H25	180.5	180.0
C04	C05	C06	C25	178.9	180.0
C06	C05	C04	H04	0.5	360.0
C06	C05	C25	C26	179.5	180.0
C06	C05	C25	H25	359.5	0.0
N07	C06	C05	C23	182.8	180.3
C05	C06	N07	C08	179.0	180.0
C05	C06	C23	N22	180.8	179.7
C05	C06	C23	N24	2.0	360.0
C04	C05	C25	C06	181.0	180.0
C25	C05	C04	H04	179.4	180.0
C25	C05	C06	N07	306.3	224.2
C25	C05	C06	C23	123.5	43.9
C05	C25	C26	C27	359.8	359.8
C26	C25	C05	H25	180.0	179.9
C05	C25	C26	H26	179.8	180.0
N07	C06	C05	C25	306.3	224.2
C05	C06	N07	C23	177.3	179.7
N07	C06	C23	N22	358.0	359.5
N07	C06	C23	N24	179.2	179.7
C06	N07	C08	C09	177.4	180.0
C06	N07	C08	C21	359.6	0.0
C23	C06	C05	C25	123.5	43.9
C05	C06	C23	N07	182.8	180.3
C23	C06	N07	C08	1.7	0.2
C21	N22	C23	C06	0.9	0.6
N22	C23	C06	N24	178.8	179.8
C06	C23	N24	H241	175.5	8.7
C06	C23	N24	H242	295.4	188.6
C08	N07	C06	C23	1.7	0.2
C09	C08	N07	C21	177.8	180.0
N07	C08	C09	C10	349.8	185.0
N07	C08	C09	C20	171.7	4.7
N07	C08	C21	N22	359.3	0.0
N07	C08	C21	H21	179.3	180.0
N07	C08	C09	C21	182.3	180.0
C09	C08	C21	N22	181.6	180.0
C09	C08	C21	H21	1.6	360.0
C10	C09	C08	C20	178.1	180.3
C08	C09	C10	C11	180.8	180.0
C08	C09	C10	H10	0.8	360.0
C08	C09	C20	C17	178.8	179.7
C08	C09	C20	H20	358.8	0.1
N07	C08	C21	C09	177.7	180.0
C21	C08	C09	C10	167.5	5.0
C21	C08	C09	C20	349.4	184.7
C08	C21	N22	C23	0.4	359.6
N22	C21	C08	H21	180.0	180.1
C10	C09	C08	C21	167.5	5.0
C08	C09	C10	C20	181.9	179.7
C10	C09	C20	C17	0.7	359.4
C10	C09	C20	H20	180.7	179.8
C09	C10	C11	O12	181.3	180.0
C09	C10	C11	C14	0.6	0.0
C11	C10	C09	H10	180.0	180.0
C20	C09	C08	C21	349.4	184.7
C08	C09	C20	C10	178.1	180.3
C20	C09	C10	C11	358.9	0.3
C20	C09	C10	H10	178.9	180.3
C14	C17	C20	C09	0.2	0.5
O18	C17	C20	C09	180.7	180.3
C17	C20	C09	H20	180.0	179.7
C11	C10	C09	C20	358.9	0.3
C09	C10	C11	H10	180.0	180.0
O12	C11	C10	C14	180.7	180.0
C10	C11	O12	C13	0.4	360.0
C10	C11	C14	O15	178.3	180.0
C10	C11	C14	C17	0.3	359.9
C10	C11	O12	C14	179.3	180.0
O12	C11	C10	H10	1.3	0.1
O12	C11	C14	O15	357.6	0.0
O12	C11	C14	C17	179.6	179.9
C11	O12	C13	H131	101.8	60.0
C11	O12	C13	H132	221.8	180.0
C11	O12	C13	H133	341.8	300.0
C10	C11	C14	O12	180.7	180.0
C14	C11	C10	H10	180.6	180.0
C14	C11	O12	C13	181.1	180.0
O15	C14	C11	C17	178.0	180.1
C11	C14	O15	C16	286.7	89.9
C11	C14	C17	O18	178.8	180.0
C11	C14	C17	C20	359.3	359.8
C13	O12	C11	C14	181.1	180.0
H131	C13	O12	H132	240.0	240.0
H131	C13	O12	H133	120.0	120.0
H132	C13	O12	H133	240.0	239.9
C11	C14	O15	C17	182.0	179.9
O15	C14	C17	O18	0.8	359.9
O15	C14	C17	C20	181.4	179.7
C14	O15	C16	H161	89.3	60.0
C14	O15	C16	H162	209.3	180.0
C14	O15	C16	H163	329.3	300.0
C09	C20	C17	C14	0.2	0.5
C11	C14	C17	O15	177.9	180.1
C17	C14	O15	C16	104.6	270.1
O18	C17	C14	C20	179.5	180.2
C14	C17	O18	C19	173.0	180.1
C14	C17	C20	H20	180.2	180.2
C16	O15	C14	C17	104.6	270.1
H161	C16	O15	H162	240.0	240.0
H161	C16	O15	H163	120.0	120.0
H162	C16	O15	H163	240.0	240.0
C09	C20	C17	O18	180.7	180.3
C14	C17	O18	C20	180.5	179.8
O18	C17	C20	H20	0.7	359.9
C17	O18	C19	H191	156.8	300.0
C17	O18	C19	H192	276.8	60.0
C17	O18	C19	H193	36.8	180.0
C09	C20	C17	H20	180.0	180.3
C14	C17	C20	O18	179.5	180.2
C20	C17	O18	C19	352.4	0.3
C19	O18	C17	C20	352.4	0.3
H191	C19	O18	H192	240.0	239.9
H191	C19	O18	H193	120.0	119.9
H192	C19	O18	H193	240.0	240.0
C06	C23	N22	C21	0.9	0.6
C08	C21	N22	H21	180.0	179.9
C21	N22	C23	N24	179.7	180.3
C06	C23	N22	N24	181.2	180.2
C23	N22	C21	H21	180.4	179.7
N22	C23	N24	H241	356.7	188.9
N22	C23	N24	H242	116.6	8.8
C06	C23	N24	N22	178.8	179.8
H241	N24	C23	H242	240.0	180.1
C03	C27	C26	C25	0.0	0.5
C05	C25	C26	H25	180.0	180.1
C25	C26	C27	C28	180.1	180.2
C27	C26	C25	H26	180.0	179.8
C03	C27	C26	C28	179.9	180.3
C27	C26	C25	H25	179.8	179.7
C25	C26	C27	H26	180.0	180.2
C26	C27	C28	O29	182.0	180.2
C26	C27	C28	O30	0.9	0.2
C03	C27	C28	C26	180.1	179.7
C28	C27	C26	H26	0.1	0.1
O29	C28	C27	O30	181.1	180.0
C27	C28	O30	H30	181.1	180.0
C27	C28	O29	O30	178.9	180.0
O29	C28	O30	H30	0.0	360.0
C27	C28	O30	O29	181.0	180.0
H011	C01	O02	C03	293.1	299.9
O02	C01	H011	H012	120.0	120.1
O02	C01	H011	H013	240.0	240.0
H012	C01	H011	H013	120.0	120.0
H012	C01	O02	C03	53.1	60.0
O02	C01	H012	H011	240.0	240.0
O02	C01	H012	H013	120.0	120.0
H011	C01	H012	H013	240.0	240.0
H013	C01	O02	C03	173.1	179.9
O02	C01	H013	H011	120.0	120.0
O02	C01	H013	H012	240.0	240.0
H011	C01	H013	H012	120.0	120.0
H04	C04	C03	C27	180.4	180.3
C03	C04	H04	C05	180.0	180.0
H04	C04	C05	C06	0.5	360.0
H04	C04	C05	C25	179.4	180.0
C05	C25	H25	C26	180.0	179.9
H25	C25	C26	C27	179.8	179.7
H25	C25	C26	H26	359.8	359.9
C08	C21	H21	N22	180.0	180.1
H21	C21	N22	C23	180.4	179.7
H10	C10	C09	C20	178.9	180.3
C09	C10	H10	C11	180.0	180.0
H10	C10	C11	O12	1.3	0.1
H10	C10	C11	C14	180.6	180.0
C09	C20	H20	C17	180.0	179.7
O12	C13	H131	H132	120.0	119.9
O12	C13	H131	H133	240.0	240.0
H132	C13	H131	H133	120.0	120.1
O12	C13	H132	H131	240.0	240.1
O12	C13	H132	H133	120.0	120.0
H131	C13	H132	H133	240.0	240.0
O12	C13	H133	H131	120.0	120.0
O12	C13	H133	H132	240.0	240.0
H131	C13	H133	H132	120.0	120.0
O15	C16	H161	H162	120.0	120.0
O15	C16	H161	H163	240.0	239.9
H162	C16	H161	H163	120.0	119.9
O15	C16	H162	H161	240.0	240.0
O15	C16	H162	H163	120.0	120.0
H161	C16	H162	H163	240.0	240.0
O15	C16	H163	H161	120.0	120.0
O15	C16	H163	H162	240.0	240.0
H161	C16	H163	H162	120.0	120.0
O18	C19	H191	H192	120.0	120.1
O18	C19	H191	H193	240.0	240.0
H192	C19	H191	H193	120.0	120.0
O18	C19	H192	H191	240.0	240.0
O18	C19	H192	H193	120.0	120.0
H191	C19	H192	H193	240.0	240.0
O18	C19	H193	H191	120.0	120.0
O18	C19	H193	H192	240.0	240.0
H191	C19	H193	H192	120.0	120.0
C23	N24	H241	H242	120.0	179.9
C23	N24	H242	H241	240.0	180.1
C25	C26	H26	C27	180.0	179.8
H26	C26	C25	H25	359.8	359.9
H26	C26	C27	C28	0.1	0.1