PDB Chemical Component 5QY
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5QY
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| O |
C |
1.231 |
1.212 |
| C |
NAG |
1.400 |
1.347 |
| C |
CA |
1.403 |
1.508 |
| CB |
CA |
1.530 |
1.531 |
| NAG |
CAJ |
1.397 |
1.400 |
| CA |
N |
1.486 |
1.474 |
| CAJ |
CAE |
1.390 |
1.385 |
| CAJ |
CAK |
1.385 |
1.396 |
| N |
CAK |
1.400 |
1.402 |
| CAE |
CAC |
1.391 |
1.384 |
| CAK |
CAF |
1.393 |
1.383 |
| CAC |
CAD |
1.390 |
1.383 |
| CAF |
CAD |
1.391 |
1.385 |
| NAG |
H1 |
1.000 |
0.970 |
| CAE |
H2 |
1.080 |
1.080 |
| CAC |
H3 |
1.080 |
1.079 |
| CAD |
H4 |
1.080 |
1.079 |
| CAF |
H5 |
1.080 |
1.080 |
| N |
H6 |
1.000 |
0.970 |
| CA |
H7 |
1.101 |
1.089 |
| CB |
H8 |
1.100 |
1.090 |
| CB |
H9 |
1.100 |
1.090 |
| CB |
H10 |
1.100 |
1.090 |
Bond Angles for 5QY
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| O |
C |
NAG |
118.1 |
119.6 |
| O |
C |
CA |
120.8 |
119.6 |
| NAG |
C |
CA |
121.0 |
120.8 |
| C |
NAG |
CAJ |
121.1 |
120.7 |
| C |
NAG |
H1 |
119.4 |
119.7 |
| C |
CA |
N |
112.8 |
108.9 |
| C |
CA |
H7 |
108.2 |
109.5 |
| CB |
CA |
H7 |
106.6 |
109.6 |
| NAG |
CAJ |
CAE |
120.6 |
120.7 |
| NAG |
CAJ |
CAK |
119.3 |
119.6 |
| CAJ |
NAG |
H1 |
119.5 |
119.7 |
| CA |
N |
H6 |
106.9 |
121.1 |
| CAE |
CAJ |
CAK |
120.1 |
119.7 |
| CAJ |
CAE |
CAC |
120.1 |
119.8 |
| CAJ |
CAE |
H2 |
119.9 |
120.1 |
| CAJ |
CAK |
CAF |
119.9 |
120.2 |
| CAE |
CAC |
CAD |
119.9 |
120.4 |
| CAC |
CAE |
H2 |
119.9 |
120.0 |
| CAE |
CAC |
H3 |
120.1 |
119.8 |
| CAK |
CAF |
H5 |
120.0 |
120.2 |
| CAD |
CAC |
H3 |
120.1 |
119.8 |
| CAC |
CAD |
H4 |
120.1 |
119.9 |
| CAF |
CAD |
H4 |
120.1 |
119.9 |
| H8 |
CB |
H9 |
109.4 |
109.5 |
| H8 |
CB |
H10 |
109.5 |
109.5 |
| H9 |
CB |
H10 |
109.5 |
109.5 |
Torsion Angles for 5QY
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| NAG |
C |
O |
CA |
176.3 |
180.2 |
| O |
C |
NAG |
CAJ |
178.7 |
182.4 |
| O |
C |
NAG |
H1 |
358.7 |
2.3 |
| O |
C |
CA |
N |
199.7 |
150.7 |
| O |
C |
CA |
H7 |
81.4 |
31.0 |
| O |
C |
NAG |
CA |
183.7 |
179.8 |
| NAG |
C |
CA |
N |
23.5 |
330.5 |
| NAG |
C |
CA |
H7 |
265.2 |
210.8 |
| C |
NAG |
CAJ |
CAE |
172.8 |
194.2 |
| C |
NAG |
CAJ |
CAK |
351.2 |
14.2 |
| CAJ |
NAG |
C |
H1 |
180.0 |
180.1 |
| O |
C |
CA |
NAG |
176.2 |
180.2 |
| CA |
C |
NAG |
CAJ |
355.0 |
2.7 |
| CA |
C |
NAG |
H1 |
175.0 |
182.6 |
| CB |
CA |
C |
H7 |
243.6 |
239.7 |
| C |
CA |
N |
H6 |
90.8 |
222.1 |
| C |
CA |
CB |
H7 |
117.4 |
120.2 |
| CB |
CA |
N |
H6 |
325.9 |
102.3 |
| CAJ |
NAG |
C |
CA |
355.0 |
2.7 |
| C |
NAG |
CAJ |
H1 |
180.0 |
179.9 |
| CAE |
CAJ |
NAG |
CAK |
181.6 |
179.9 |
| NAG |
CAJ |
CAE |
CAC |
179.2 |
180.3 |
| NAG |
CAJ |
CAE |
H2 |
359.2 |
0.2 |
| NAG |
CAJ |
CAK |
CAF |
180.9 |
179.6 |
| C |
CA |
N |
H7 |
241.1 |
240.3 |
| NAG |
CAJ |
CAE |
CAK |
178.4 |
180.1 |
| CAE |
CAJ |
NAG |
H1 |
352.8 |
14.3 |
| CAE |
CAJ |
CAK |
CAF |
359.2 |
359.7 |
| CAJ |
CAE |
CAC |
CAD |
359.6 |
0.0 |
| CAC |
CAE |
CAJ |
H2 |
180.0 |
180.0 |
| CAJ |
CAE |
CAC |
H3 |
179.6 |
180.0 |
| NAG |
CAJ |
CAK |
CAE |
181.6 |
179.9 |
| CAK |
CAJ |
NAG |
H1 |
171.2 |
194.3 |
| CAK |
CAJ |
CAE |
CAC |
0.9 |
0.2 |
| CAK |
CAJ |
CAE |
H2 |
180.9 |
180.2 |
| CAJ |
CAK |
CAF |
H5 |
180.2 |
180.2 |
| C |
CA |
N |
CAK |
329.3 |
42.4 |
| N |
CAK |
CAF |
H5 |
359.8 |
0.5 |
| CAC |
CAE |
CAJ |
CAK |
0.9 |
0.2 |
| CAJ |
CAE |
CAC |
H2 |
180.0 |
180.0 |
| CAD |
CAC |
CAE |
H3 |
180.0 |
180.0 |
| CAE |
CAC |
CAD |
H4 |
179.9 |
179.8 |
| CAK |
CAF |
CAD |
H4 |
180.2 |
180.0 |
| CAD |
CAC |
CAE |
H2 |
179.6 |
180.1 |
| CAE |
CAC |
CAD |
H3 |
180.0 |
180.0 |
| CAF |
CAD |
CAC |
H4 |
180.0 |
180.0 |
| CAJ |
CAK |
CAF |
CAD |
0.2 |
0.2 |
| CAF |
CAD |
CAC |
H3 |
179.9 |
179.9 |
| CAC |
CAD |
CAF |
H4 |
180.0 |
180.0 |
| H1 |
NAG |
C |
CA |
175.0 |
182.6 |
| C |
NAG |
H1 |
CAJ |
180.0 |
180.1 |
| H1 |
NAG |
CAJ |
CAE |
352.8 |
14.3 |
| H1 |
NAG |
CAJ |
CAK |
171.2 |
194.3 |
| H2 |
CAE |
CAJ |
CAK |
180.9 |
180.2 |
| CAJ |
CAE |
H2 |
CAC |
180.0 |
180.0 |
| H2 |
CAE |
CAC |
CAD |
179.6 |
180.1 |
| H2 |
CAE |
CAC |
H3 |
359.6 |
0.1 |
| CAE |
CAC |
H3 |
CAD |
180.0 |
180.0 |
| H3 |
CAC |
CAE |
H2 |
359.6 |
0.1 |
| H3 |
CAC |
CAD |
H4 |
359.9 |
359.8 |
| H4 |
CAD |
CAC |
H3 |
359.9 |
359.8 |
| H5 |
CAF |
CAD |
H4 |
0.2 |
0.0 |
| C |
CA |
H7 |
N |
121.8 |
119.3 |
| H7 |
CA |
N |
H6 |
209.7 |
341.9 |
| H8 |
CB |
CA |
H7 |
62.7 |
299.8 |
| H9 |
CB |
H8 |
H10 |
120.0 |
120.0 |
| H9 |
CB |
CA |
H7 |
182.6 |
59.8 |
| H8 |
CB |
H9 |
H10 |
240.0 |
240.0 |
| H10 |
CB |
CA |
H7 |
302.6 |
179.8 |
| H8 |
CB |
H10 |
H9 |
120.0 |
120.0 |