Atom Nomenclature for 5QU

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5QU

Atom Name (V3) Atom Name (V2)
N14 N1
C18 C1
C17 C2
C16 C3
C15 C4
C19 C5
C20 C6
C23 C7
C24 C8
C12 C9
C1 C10
C2 C11
C3 C12
C4 C13
O5 O1
N6 N2
C7 C14
C8 C15
C9 C16
C10 C17
N11 N3
S13 S1
F21 F1
F22 F2
N25 N4
C26 C18
N27 N5
C28 C19
H1 H1
H2 H2
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H9 H9
H10 H10
H11 H11
H12 H12
H13 H13
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H20 H20
H21 H21