PDB Chemical Component 5QQ
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5QQ
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| N08 |
C07 |
1.355 |
1.309 |
| N08 |
C09 |
1.376 |
1.338 |
| C07 |
C06 |
1.407 |
1.413 |
| C04 |
C03 |
1.388 |
1.380 |
| C04 |
C05 |
1.384 |
1.394 |
| C09 |
N10 |
1.381 |
1.323 |
| C09 |
N26 |
1.340 |
1.376 |
| N10 |
N11 |
1.357 |
1.286 |
| C03 |
C02 |
1.383 |
1.386 |
| C06 |
C05 |
1.395 |
1.483 |
| C06 |
N27 |
1.348 |
1.318 |
| C05 |
C28 |
1.385 |
1.394 |
| N26 |
N27 |
1.384 |
1.398 |
| N26 |
C12 |
1.371 |
1.357 |
| N11 |
C12 |
1.346 |
1.308 |
| C02 |
F01 |
1.345 |
1.352 |
| C02 |
C29 |
1.387 |
1.385 |
| C28 |
C29 |
1.386 |
1.380 |
| C12 |
C13 |
1.509 |
1.508 |
| C18 |
C17 |
1.393 |
1.360 |
| C18 |
C19 |
1.426 |
1.406 |
| C17 |
C16 |
1.396 |
1.394 |
| N20 |
C19 |
1.378 |
1.337 |
| N20 |
C21 |
1.353 |
1.311 |
| C19 |
C24 |
1.376 |
1.417 |
| C16 |
C13 |
1.508 |
1.507 |
| C16 |
C25 |
1.394 |
1.361 |
| C13 |
F14 |
1.334 |
1.399 |
| C13 |
F15 |
1.339 |
1.398 |
| C21 |
C22 |
1.398 |
1.392 |
| C24 |
C25 |
1.423 |
1.404 |
| C24 |
C23 |
1.434 |
1.407 |
| C22 |
C23 |
1.395 |
1.367 |
| C17 |
H1 |
1.081 |
1.080 |
| C21 |
H2 |
1.080 |
1.080 |
| C22 |
H3 |
1.080 |
1.081 |
| C28 |
H4 |
1.080 |
1.080 |
| C03 |
H5 |
1.080 |
1.079 |
| C04 |
H6 |
1.080 |
1.080 |
| C07 |
H7 |
1.080 |
1.080 |
| C18 |
H8 |
1.080 |
1.080 |
| C23 |
H9 |
1.080 |
1.079 |
| C25 |
H10 |
1.080 |
1.080 |
| C29 |
H11 |
1.080 |
1.079 |
Bond Angles for 5QQ
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N08 |
C07 |
H7 |
120.2 |
119.6 |
| N08 |
C09 |
N10 |
131.0 |
133.5 |
| N08 |
C09 |
N26 |
120.8 |
119.9 |
| C07 |
C06 |
N27 |
120.3 |
119.8 |
| C04 |
C03 |
H5 |
120.1 |
120.0 |
| C05 |
C04 |
H6 |
120.0 |
120.0 |
| N10 |
C09 |
N26 |
108.2 |
106.6 |
| C09 |
N10 |
N11 |
107.3 |
109.6 |
| C09 |
N26 |
N27 |
121.0 |
119.8 |
| C09 |
N26 |
C12 |
107.9 |
106.1 |
| N10 |
N11 |
C12 |
108.3 |
110.3 |
| C03 |
C02 |
C29 |
120.0 |
120.2 |
| C06 |
N27 |
N26 |
118.9 |
118.9 |
| C05 |
C28 |
C29 |
119.8 |
119.9 |
| C05 |
C28 |
H4 |
120.1 |
120.0 |
| C28 |
C29 |
C02 |
120.1 |
120.1 |
| C02 |
C29 |
H11 |
120.0 |
120.0 |
| C29 |
C28 |
H4 |
120.1 |
120.1 |
| C28 |
C29 |
H11 |
119.9 |
119.9 |
| C12 |
C13 |
F14 |
108.2 |
109.5 |
| C12 |
C13 |
F15 |
109.3 |
109.5 |
| C18 |
C17 |
H1 |
119.8 |
119.5 |
| C19 |
C18 |
H8 |
120.5 |
120.1 |
| C17 |
C16 |
C25 |
120.6 |
120.9 |
| C16 |
C17 |
H1 |
119.8 |
119.4 |
| N20 |
C21 |
H2 |
119.7 |
119.1 |
| C19 |
C24 |
C25 |
120.0 |
119.6 |
| C19 |
C24 |
C23 |
120.1 |
119.0 |
| C24 |
C25 |
C16 |
119.3 |
119.6 |
| C16 |
C25 |
H10 |
120.3 |
120.2 |
| F14 |
C13 |
F15 |
110.2 |
109.5 |
| C21 |
C22 |
C23 |
120.0 |
119.9 |
| C22 |
C21 |
H2 |
119.7 |
119.1 |
| C21 |
C22 |
H3 |
120.0 |
120.1 |
| C23 |
C24 |
C25 |
119.9 |
121.4 |
| C24 |
C25 |
H10 |
120.4 |
120.2 |
| C22 |
C23 |
C24 |
118.1 |
118.1 |
| C24 |
C23 |
H9 |
121.0 |
120.9 |
| C23 |
C22 |
H3 |
120.0 |
120.0 |
| C22 |
C23 |
H9 |
120.9 |
120.9 |
Torsion Angles for 5QQ
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N08 |
C07 |
C06 |
N27 |
359.6 |
0.3 |
| C09 |
N08 |
C07 |
H7 |
180.7 |
180.0 |
| N10 |
C09 |
N08 |
N26 |
181.2 |
180.0 |
| N08 |
C09 |
N10 |
N11 |
179.2 |
180.0 |
| N08 |
C09 |
N26 |
N27 |
0.8 |
359.7 |
| N08 |
C09 |
N26 |
C12 |
181.1 |
180.0 |
| C07 |
C06 |
N27 |
N26 |
0.4 |
359.5 |
| C04 |
C03 |
C02 |
C29 |
359.8 |
0.5 |
| C05 |
C04 |
C03 |
H5 |
180.6 |
179.7 |
| C04 |
C05 |
C28 |
C29 |
359.9 |
0.1 |
| C04 |
C05 |
C28 |
H4 |
180.0 |
179.7 |
| N08 |
C09 |
N10 |
N26 |
178.9 |
180.0 |
| N10 |
C09 |
N26 |
N27 |
179.8 |
179.7 |
| N10 |
C09 |
N26 |
C12 |
0.1 |
0.0 |
| C09 |
N10 |
N11 |
C12 |
359.4 |
0.0 |
| N08 |
C09 |
N26 |
N10 |
181.0 |
180.0 |
| N26 |
C09 |
N10 |
N11 |
0.3 |
360.0 |
| C06 |
N27 |
N26 |
C09 |
359.4 |
0.5 |
| N11 |
N10 |
C09 |
N26 |
0.3 |
360.0 |
| C28 |
C29 |
C02 |
C03 |
359.7 |
0.1 |
| C03 |
C02 |
C29 |
H11 |
179.7 |
180.0 |
| C06 |
C05 |
C04 |
H6 |
359.3 |
359.8 |
| C06 |
C05 |
C28 |
C29 |
180.1 |
180.0 |
| C06 |
C05 |
C28 |
H4 |
0.1 |
359.7 |
| C09 |
N26 |
N27 |
C06 |
359.4 |
0.5 |
| C05 |
C28 |
C29 |
C02 |
0.4 |
359.6 |
| C29 |
C28 |
C05 |
H4 |
180.0 |
180.3 |
| C05 |
C28 |
C29 |
H11 |
180.4 |
179.7 |
| C09 |
N26 |
N27 |
C12 |
180.4 |
180.4 |
| C09 |
N26 |
C12 |
N27 |
179.7 |
179.7 |
| C06 |
N27 |
N26 |
C12 |
179.1 |
180.2 |
| C09 |
N26 |
C12 |
N11 |
359.5 |
360.0 |
| N11 |
C12 |
C13 |
F14 |
347.9 |
120.0 |
| N11 |
C12 |
C13 |
F15 |
227.9 |
240.0 |
| C28 |
C29 |
C02 |
F01 |
179.8 |
180.0 |
| C02 |
C29 |
C28 |
H4 |
180.4 |
180.0 |
| C28 |
C29 |
C02 |
H11 |
180.0 |
180.1 |
| C03 |
C02 |
C29 |
C28 |
359.7 |
0.1 |
| C05 |
C28 |
C29 |
H4 |
180.0 |
179.7 |
| C02 |
C29 |
C28 |
H11 |
180.0 |
179.9 |
| F14 |
C13 |
C12 |
F15 |
120.0 |
240.0 |
| C18 |
C17 |
C16 |
C25 |
360.0 |
0.3 |
| C16 |
C17 |
C18 |
H1 |
180.0 |
179.8 |
| C19 |
C18 |
C17 |
H1 |
180.3 |
180.3 |
| C18 |
C19 |
C24 |
C25 |
1.0 |
359.7 |
| C18 |
C19 |
C24 |
C23 |
180.6 |
180.1 |
| C18 |
C17 |
C16 |
H1 |
180.0 |
180.2 |
| C24 |
C25 |
C16 |
C17 |
0.2 |
359.4 |
| C17 |
C16 |
C25 |
H10 |
180.1 |
180.0 |
| N20 |
C19 |
C18 |
H8 |
0.2 |
0.1 |
| C19 |
N20 |
C21 |
H2 |
179.8 |
180.0 |
| N20 |
C19 |
C24 |
C25 |
179.9 |
179.7 |
| N20 |
C19 |
C24 |
C23 |
359.5 |
0.0 |
| N20 |
C21 |
C22 |
C23 |
359.7 |
360.0 |
| C22 |
C21 |
N20 |
H2 |
180.0 |
180.0 |
| N20 |
C21 |
C22 |
H3 |
179.7 |
180.0 |
| C19 |
C24 |
C25 |
C16 |
359.4 |
0.6 |
| C23 |
C24 |
C19 |
C25 |
179.6 |
180.3 |
| C19 |
C24 |
C25 |
H10 |
179.4 |
180.0 |
| C22 |
C23 |
C24 |
C19 |
360.0 |
360.0 |
| C19 |
C24 |
C23 |
H9 |
180.0 |
180.0 |
| C25 |
C16 |
C17 |
H1 |
180.0 |
180.0 |
| C23 |
C24 |
C25 |
C16 |
179.8 |
180.2 |
| C24 |
C25 |
C16 |
H10 |
180.0 |
179.4 |
| C12 |
C13 |
F14 |
F15 |
240.6 |
120.0 |
| C12 |
C13 |
F15 |
F14 |
118.7 |
240.0 |
| N20 |
C21 |
C22 |
H2 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
C24 |
0.4 |
0.0 |
| C23 |
C22 |
C21 |
H3 |
180.0 |
180.0 |
| C21 |
C22 |
C23 |
H9 |
180.4 |
180.0 |
| C17 |
C16 |
C25 |
C24 |
0.2 |
359.4 |
| C19 |
C24 |
C25 |
C23 |
179.6 |
180.4 |
| C16 |
C25 |
C24 |
H10 |
180.0 |
180.6 |
| C22 |
C23 |
C24 |
C25 |
179.6 |
180.3 |
| C25 |
C24 |
C23 |
H9 |
359.6 |
0.4 |
| C19 |
C24 |
C23 |
C25 |
180.4 |
179.6 |
| C23 |
C24 |
C25 |
H10 |
359.8 |
359.6 |
| C24 |
C23 |
C22 |
H3 |
180.4 |
180.0 |
| C22 |
C23 |
C24 |
H9 |
180.0 |
179.9 |
| C19 |
C24 |
C23 |
C22 |
360.0 |
360.0 |
| C23 |
C22 |
C21 |
H2 |
179.7 |
180.0 |
| C21 |
C22 |
C23 |
H3 |
180.0 |
180.0 |
| C24 |
C23 |
C22 |
H9 |
180.0 |
180.1 |
| H1 |
C17 |
C16 |
C25 |
180.0 |
180.0 |
| H2 |
C21 |
C22 |
C23 |
179.7 |
180.0 |
| H2 |
C21 |
C22 |
H3 |
359.7 |
360.0 |
| C21 |
C22 |
H3 |
C23 |
180.0 |
180.0 |
| H3 |
C22 |
C21 |
H2 |
359.7 |
360.0 |
| H3 |
C22 |
C23 |
C24 |
180.4 |
180.0 |
| H3 |
C22 |
C23 |
H9 |
0.4 |
360.0 |
| C05 |
C28 |
H4 |
C29 |
180.0 |
180.4 |
| H4 |
C28 |
C29 |
C02 |
180.4 |
180.0 |
| H4 |
C28 |
C29 |
H11 |
0.4 |
0.0 |
| H5 |
C03 |
C02 |
C29 |
179.8 |
180.0 |
| H6 |
C04 |
C03 |
H5 |
0.6 |
0.5 |
| H7 |
C07 |
C06 |
N27 |
179.5 |
180.3 |
| H8 |
C18 |
C17 |
H1 |
0.3 |
0.2 |
| H9 |
C23 |
C24 |
C25 |
359.6 |
0.4 |
| C22 |
C23 |
H9 |
C24 |
180.0 |
180.1 |
| H9 |
C23 |
C22 |
H3 |
0.4 |
360.0 |
| C24 |
C25 |
H10 |
C16 |
180.0 |
180.6 |
| C28 |
C29 |
H11 |
C02 |
180.0 |
179.9 |
| H11 |
C29 |
C28 |
H4 |
0.4 |
0.0 |