PDB Chemical Component 5QO

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5QO

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C7	C6	1.393	1.392
C7	C8	1.393	1.367
C6	C5	1.396	1.378
O1	C16	1.230	1.214
C8	C4	1.394	1.402
C13	C12	1.331	1.406
C13	C10	1.344	1.356
C5	C10	1.395	1.475
C5	C3	1.400	1.427
C16	C12	1.395	1.472
C16	N5	1.416	1.352
C12	C11	1.383	1.383
C10	N4	1.340	1.384
C4	C3	1.398	1.414
C4	N1	1.345	1.340
C3	N2	1.349	1.329
N5	C15	1.497	1.445
N4	C11	1.323	1.341
C11	C14	1.533	1.507
N1	C1	1.345	1.320
N2	C2	1.345	1.328
C15	C14	1.536	1.519
C14	C17	1.541	1.531
C1	C2	1.402	1.398
C1	C9	1.530	1.506
C2	N3	1.340	1.401
C17	C21	1.398	1.498
C21	C20	1.396	1.305
N3	C18	1.476	1.487
C20	C18	1.536	1.497
C18	C19	1.529	1.538
C15	H1	1.100	1.089
C15	H2	1.100	1.088
N5	H3	1.000	0.971
C13	H4	1.080	1.078
N4	H5	1.000	0.970
C14	H6	1.100	1.087
C17	H7	1.100	1.082
C17	H8	1.100	1.093
C21	H9	1.080	1.099
C20	H10	1.080	1.096
C18	H11	1.100	1.080
C19	H12	1.100	1.090
C19	H13	1.100	1.090
C19	H14	1.100	1.090
N3	H15	1.000	0.983
C6	H16	1.081	1.081
C7	H17	1.080	1.082
C8	H18	1.080	1.083
C9	H19	1.100	1.090
C9	H20	1.100	1.090
C9	H21	1.100	1.090

Bond Angles for 5QO

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C7	C6	H16	120.0	120.7
C7	C8	C4	119.8	120.2
C8	C7	H17	119.8	118.9
C7	C8	H18	120.1	119.5
O1	C16	C12	121.0	122.5
C8	C4	N1	120.4	123.6
C4	C8	H18	120.1	120.2
C13	C12	C11	106.2	107.7
C13	C10	N4	109.2	108.2
C10	C13	H4	125.8	126.3
C16	C12	C11	118.8	120.4
C16	N5	H3	119.2	117.1
C12	C11	N4	109.1	107.7
C12	C11	C14	123.4	124.8
C10	N4	C11	107.1	109.2
C10	N4	H5	126.4	129.7
C4	N1	C1	120.7	120.9
N5	C15	C14	110.9	117.0
N5	C15	H1	109.1	107.9
N5	C15	H2	109.1	107.7
N4	C11	C14	127.5	127.6
C11	N4	H5	126.5	121.0
C15	C14	C11	107.0	109.2
C11	C14	C17	112.1	107.4
C11	C14	H6	108.9	109.9
N1	C1	C9	119.0	119.6
C15	C14	C17	110.9	110.5
C14	C15	H1	109.1	108.0
C14	C15	H2	109.1	107.9
C15	C14	H6	108.9	110.2
C14	C17	C21	109.9	112.9
C17	C14	H6	108.9	109.5
C14	C17	H7	109.4	109.3
C14	C17	H8	109.4	108.0
C1	C9	H19	109.5	109.5
C1	C9	H20	109.5	109.4
C1	C9	H21	109.5	109.5
C2	N3	H15	105.6	123.5
C17	C21	C20	124.0	126.6
C21	C17	H7	109.4	110.0
C21	C17	H8	109.4	108.1
C17	C21	H9	118.0	117.4
C21	C20	C18	124.0	125.0
C20	C21	H9	118.0	116.0
C21	C20	H10	118.0	116.7
N3	C18	H11	110.7	110.9
C20	C18	C19	108.0	107.9
C18	C20	H10	118.0	118.3
C20	C18	H11	109.8	110.0
C19	C18	H11	109.9	108.8
C18	C19	H12	109.5	109.5
C18	C19	H13	109.5	109.5
C18	C19	H14	109.4	109.5
H1	C15	H2	109.5	108.0
H7	C17	H8	109.5	108.5
H12	C19	H13	109.5	109.4
H12	C19	H14	109.5	109.5
H13	C19	H14	109.5	109.5
H19	C9	H20	109.5	109.5
H19	C9	H21	109.5	109.5
H20	C9	H21	109.5	109.5

Torsion Angles for 5QO

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C8	C7	C6	H16	179.6	181.6
C7	C8	C4	N1	180.3	173.8
C4	C8	C7	H18	180.0	179.4
O1	C16	C12	C11	197.0	190.3
O1	C16	N5	H3	0.9	5.3
C4	C8	C7	H17	179.7	178.6
C7	C8	C4	H18	180.0	180.7
C8	C4	N1	C1	179.9	174.5
C16	C12	C13	C11	178.5	178.3
C13	C12	C11	N4	359.8	356.2
C13	C12	C11	C14	179.6	175.5
C10	C13	C12	C11	0.4	1.4
C13	C10	N4	C11	0.4	356.0
C13	C10	N4	H5	180.4	174.9
C5	C10	C13	H4	1.2	1.5
C5	C10	N4	H5	358.9	354.3
C13	C12	C16	C11	181.6	181.9
C12	C16	N5	H3	178.6	185.3
C16	C12	C11	N4	181.0	177.6
C16	C12	C11	C14	0.8	357.0
C16	N5	C15	C14	325.8	333.3
C16	N5	C15	H1	86.0	95.3
C16	N5	C15	H2	205.6	211.7
C10	N4	C11	C12	359.9	4.8
N4	C11	C12	C14	180.2	180.6
C12	C11	N4	H5	179.9	185.8
C15	C14	C11	C12	325.0	343.1
C12	C11	C14	C17	203.2	223.2
C12	C11	C14	H6	82.6	104.1
N4	C10	C13	H4	179.5	180.9
C12	C11	N4	C10	359.9	4.8
C10	N4	C11	C14	180.1	185.5
C11	N4	C10	H5	180.0	181.1
N1	C4	C8	H18	0.3	353.1
C4	N1	C1	C9	179.8	178.1
N5	C15	C14	C11	47.8	29.9
N5	C15	C14	C17	170.4	147.9
C14	C15	N5	H1	239.8	238.0
C14	C15	N5	H2	120.2	121.6
N5	C15	C14	H6	290.2	269.0
H1	C15	N5	H2	240.4	243.6
C12	C11	N4	C14	179.7	179.3
C10	N4	C11	H5	180.0	179.0
C15	C14	C11	N4	144.7	162.3
N4	C11	C14	C17	22.9	42.4
N4	C11	C14	H6	262.3	283.3
C12	C11	C14	N4	180.3	180.8
C14	C11	N4	H5	0.1	6.5
C15	C14	C11	C17	121.8	119.9
C11	C14	C15	H1	287.5	267.9
C11	C14	C15	H2	168.0	151.4
C15	C14	C11	H6	242.4	239.0
C11	C14	C17	C21	276.2	252.4
C17	C14	C11	H6	120.6	119.1
C11	C14	C17	H7	36.2	15.1
C11	C14	C17	H8	156.1	133.0
N1	C1	C9	H19	360.0	90.0
N1	C1	C9	H20	120.0	210.0
N1	C1	C9	H21	240.0	329.9
N2	C2	N3	H15	106.4	160.4
C12	C11	C14	C15	325.0	343.1
N5	C15	C14	H1	120.2	121.9
N5	C15	C14	H2	239.8	238.5
N4	C11	C14	C15	144.7	162.3
C11	C14	C15	C17	237.4	242.0
C11	C14	C15	H6	117.6	120.8
C15	C14	C17	C21	156.6	133.3
C17	C14	C15	H6	240.2	238.8
C15	C14	C17	H7	276.7	256.1
C15	C14	C17	H8	36.6	13.9
H1	C15	C14	H2	119.6	116.6
C15	C14	C17	C11	240.5	240.9
C11	C14	C17	H6	239.4	240.6
C17	C14	C15	H1	50.1	25.9
C17	C14	C15	H2	290.5	269.4
C15	C14	C17	H6	119.9	121.5
C14	C17	C21	C20	131.4	115.4
C21	C17	C14	H7	240.0	237.3
C21	C17	C14	H8	120.1	119.4
C14	C17	C21	H9	311.4	294.7
H7	C17	C14	H8	240.1	242.1
C1	C2	N3	H15	286.7	339.9
H19	C9	C1	H20	240.0	240.0
H19	C9	C1	H21	120.0	120.1
H20	C9	C1	H21	240.0	240.0
C2	N3	C18	H11	325.4	7.6
C21	C17	C14	H6	36.8	11.8
C14	C17	C21	H7	120.0	122.4
C14	C17	C21	H8	239.9	240.7
C17	C21	C20	C18	2.6	1.1
C20	C21	C17	H9	180.0	180.7
C17	C21	C20	H10	182.7	181.1
H7	C17	C21	H8	119.9	118.3
C20	C21	C17	H7	11.3	353.0
C20	C21	C17	H8	251.4	234.7
C17	C21	C20	H9	180.0	179.3
C21	C20	C18	C19	100.6	98.5
C18	C20	C21	H10	180.0	180.0
C21	C20	C18	H11	340.7	339.9
N3	C18	C20	H10	38.5	36.7
C20	C18	N3	H11	121.7	122.7
C19	C18	N3	H11	239.5	240.8
N3	C18	C19	H12	180.0	299.9
N3	C18	C19	H13	300.0	59.9
N3	C18	C19	H14	60.0	179.9
C18	C20	C21	H9	182.6	181.7
C21	C20	C18	H10	180.0	180.0
N3	C18	C20	H11	237.8	236.9
C19	C18	C20	H11	119.9	118.6
C20	C18	C19	H12	299.3	60.1
C20	C18	C19	H13	59.3	180.0
C20	C18	C19	H14	179.3	300.0
N3	C18	C19	H11	120.9	120.5
C19	C18	C20	H10	280.6	278.5
C20	C18	C19	H11	240.2	240.6
H12	C19	C18	H13	240.0	240.1
H12	C19	C18	H14	120.0	120.1
H13	C19	C18	H14	240.0	240.0
N5	C15	H1	C14	238.7	232.6
N5	C15	H1	H2	119.4	116.1
H1	C15	C14	C11	287.5	267.9
H1	C15	C14	C17	50.1	25.9
C14	C15	H1	H2	240.6	243.5
H1	C15	C14	H6	169.9	147.1
N5	C15	H2	C14	121.3	127.2
N5	C15	H2	H1	240.6	243.7
H2	C15	C14	C11	168.0	151.4
H2	C15	C14	C17	290.5	269.4
C14	C15	H2	H1	119.4	116.5
H2	C15	C14	H6	50.4	30.5
H3	N5	C15	C14	145.8	152.9
H3	N5	C15	H1	266.0	274.9
H3	N5	C15	H2	25.6	31.3
H4	C13	C12	C11	180.4	182.0
H4	C13	C10	N4	179.5	180.9
C10	N4	H5	C11	180.0	181.2
H5	N4	C11	C14	0.1	6.5
C15	C14	H6	C11	116.4	120.4
C11	C14	H6	C17	122.6	117.8
C15	C14	H6	C17	238.9	238.3
H6	C14	C15	H1	169.9	147.1
H6	C14	C15	H2	50.4	30.5
H6	C14	C17	C21	36.8	11.8
H6	C14	C17	H7	156.8	134.5
H6	C14	C17	H8	276.7	252.4
C14	C17	H7	C21	239.6	235.5
H7	C17	C14	H6	156.8	134.5
C14	C17	H7	H8	119.8	117.5
H7	C17	C21	C20	11.3	353.0
C21	C17	H7	H8	240.2	242.0
H7	C17	C21	H9	191.3	172.3
C14	C17	H8	C21	120.4	122.4
H8	C17	C14	H6	276.7	252.4
C14	C17	H8	H7	240.2	241.6
H8	C17	C21	C20	251.4	234.7
C21	C17	H8	H7	119.8	119.2
H8	C17	C21	H9	71.4	54.0
C17	C21	H9	C20	180.0	180.6
H9	C21	C17	H7	191.3	172.3
H9	C21	C17	H8	71.4	54.0
H9	C21	C20	C18	182.6	181.7
H9	C21	C20	H10	2.7	1.8
C21	C20	H10	C18	180.0	180.0
H10	C20	C21	H9	2.7	1.8
H10	C20	C18	C19	280.6	278.5
H10	C20	C18	H11	160.7	159.8
C20	C18	H11	C19	118.7	118.1
H11	C18	C20	H10	160.7	159.8
H11	C18	C19	H12	59.1	179.5
H11	C18	C19	H13	179.1	299.4
H11	C18	C19	H14	299.1	59.4
H12	C19	C18	H11	59.1	179.5
C18	C19	H12	H13	120.0	120.0
C18	C19	H12	H14	240.0	239.9
H13	C19	H12	H14	120.0	120.0
H13	C19	C18	H11	179.1	299.4
C18	C19	H13	H12	240.0	240.0
C18	C19	H13	H14	120.0	120.0
H12	C19	H13	H14	240.0	240.0
H14	C19	C18	H11	299.1	59.4
C18	C19	H14	H12	120.0	120.1
C18	C19	H14	H13	240.0	240.0
H12	C19	H14	H13	120.0	119.9
H15	N3	C18	H11	203.3	188.8
H17	C7	C6	H16	359.6	1.5
H17	C7	C8	C4	179.7	178.6
H17	C7	C8	H18	359.7	359.2
C7	C8	H18	C4	180.0	179.4
H18	C8	C7	H17	359.7	359.2
H18	C8	C4	N1	0.3	353.1
C1	C9	H19	H20	120.0	119.9
C1	C9	H19	H21	240.0	239.9
H20	C9	H19	H21	120.0	120.0
C1	C9	H20	H19	240.0	240.0
C1	C9	H20	H21	120.0	120.0
H19	C9	H20	H21	240.0	240.0
C1	C9	H21	H19	120.0	120.0
C1	C9	H21	H20	240.0	240.1
H19	C9	H21	H20	120.0	120.0