PDB Chemical Component 5PP

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5PP

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O17 C6 1.314 1.360
O17 H17 0.950 0.967
C6 C5 1.447 1.391
C6 C1 1.396 1.386
C5 O7 1.376 1.360
C5 C4 1.396 1.386
O7 C8 1.381 1.360
C8 C13 1.404 1.387
C8 C9 1.395 1.388
C13 C12 1.390 1.381
C13 H13 1.080 1.081
C12 C11 1.396 1.382
C12 H12 1.080 1.081
C11 C10 1.389 1.384
C11 H11 1.080 1.080
C10 C9 1.390 1.381
C10 H10 1.080 1.079
C9 H9 1.080 1.080
C4 C3 1.400 1.382
C4 H4 1.080 1.080
C3 C2 1.396 1.383
C3 H3 1.080 1.080
C2 C1 1.386 1.382
C2 C14 1.520 1.507
C1 H1 1.080 1.080
C14 C15 1.548 1.530
C14 H141 1.100 1.090
C14 H142 1.100 1.090
C15 C16 1.524 1.530
C15 H151 1.099 1.090
C15 H152 1.100 1.090
C16 C17 1.545 1.530
C16 H161 1.100 1.090
C16 H162 1.100 1.091
C17 C18 1.554 1.530
C17 H171 1.100 1.090
C17 H172 1.100 1.090
C18 H181 1.100 1.090
C18 H182 1.100 1.090
C18 H183 1.100 1.090

Bond Angles for 5PP

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C6 O17 H17 109.5 106.8
O17 C6 C5 113.9 120.1
O17 C6 C1 123.2 120.1
C5 C6 C1 119.3 119.8
C6 C5 O7 114.9 120.1
C6 C5 C4 119.4 119.9
C6 C1 C2 119.4 120.0
C6 C1 H1 120.3 119.9
O7 C5 C4 124.5 120.1
C5 O7 C8 121.3 106.8
C5 C4 C3 119.9 120.0
C5 C4 H4 120.0 120.0
O7 C8 C13 119.0 120.1
O7 C8 C9 118.8 120.0
C13 C8 C9 119.6 119.9
C8 C13 C12 119.8 119.9
C8 C13 H13 120.1 120.0
C8 C9 C10 120.3 119.9
C8 C9 H9 119.9 120.0
C12 C13 H13 120.1 120.0
C13 C12 C11 119.9 120.1
C13 C12 H12 120.1 120.0
C11 C12 H12 120.1 119.9
C12 C11 C10 120.5 120.1
C12 C11 H11 119.8 120.0
C10 C11 H11 119.7 119.9
C11 C10 C9 119.7 120.0
C11 C10 H10 120.1 119.9
C9 C10 H10 120.1 120.0
C10 C9 H9 119.8 120.0
C3 C4 H4 120.0 120.0
C4 C3 C2 119.7 120.1
C4 C3 H3 120.2 120.0
C2 C3 H3 120.2 119.9
C3 C2 C1 121.4 120.2
C3 C2 C14 118.3 119.9
C1 C2 C14 119.5 119.9
C2 C1 H1 120.3 120.1
C2 C14 C15 108.9 109.4
C2 C14 H141 109.8 109.5
C2 C14 H142 109.7 109.5
C15 C14 H141 109.8 109.5
C15 C14 H142 109.7 109.5
C14 C15 C16 117.0 109.5
C14 C15 H151 105.3 109.5
C14 C15 H152 107.0 109.5
H141 C14 H142 109.0 109.5
C16 C15 H151 105.3 109.4
C16 C15 H152 107.1 109.4
C15 C16 C17 111.6 109.5
C15 C16 H161 108.3 109.5
C15 C16 H162 108.7 109.4
H151 C15 H152 115.6 109.5
C17 C16 H161 108.3 109.5
C17 C16 H162 108.8 109.5
C16 C17 C18 118.3 109.5
C16 C17 H171 104.5 109.4
C16 C17 H172 106.6 109.5
H161 C16 H162 111.1 109.4
C18 C17 H171 104.6 109.5
C18 C17 H172 106.6 109.5
C17 C18 H181 109.5 109.5
C17 C18 H182 109.5 109.5
C17 C18 H183 109.5 109.5
H171 C17 H172 116.7 109.5
H181 C18 H182 109.5 109.5
H181 C18 H183 109.5 109.4
H182 C18 H183 109.4 109.5

Torsion Angles for 5PP

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C5 C6 O17 C1 158.3 179.7
O17 C6 C5 O7 11.5 360.0
O17 C6 C5 C4 203.4 180.0
O17 C6 C1 C2 162.8 180.3
O17 C6 C1 H1 342.8 359.8
H17 O17 C6 C5 231.6 90.0
H17 O17 C6 C1 73.3 270.3
C5 C6 O17 H17 231.6 90.0
O17 C6 C5 C1 200.8 180.3
C5 C6 C1 C2 5.6 0.5
C5 C6 C1 H1 185.6 180.0
O7 C5 C6 C4 168.2 180.0
C6 C5 O7 C8 122.0 174.5
C6 C5 C4 C3 354.6 360.0
C6 C5 C4 H4 174.6 180.0
C1 C6 O17 H17 73.3 270.3
O17 C6 C1 C5 157.2 179.7
C1 C6 C5 O7 170.7 179.7
C1 C6 C5 C4 2.6 359.8
C3 C2 C1 C6 348.8 359.4
C6 C1 C2 C14 179.3 179.8
C2 C1 C6 H1 180.0 180.5
O7 C5 C6 C1 170.7 179.7
C6 C5 O7 C4 192.5 180.0
O7 C5 C4 C3 187.7 180.0
O7 C5 C4 H4 7.7 0.0
C5 O7 C8 C13 301.7 93.4
C5 O7 C8 C9 139.8 273.2
C4 C5 C6 C1 2.6 359.8
C6 C5 C4 O7 166.9 180.0
C4 C5 O7 C8 289.4 354.4
C3 C4 C5 H4 180.0 180.0
C5 C4 C3 C2 0.1 360.0
C5 C4 C3 H3 180.1 180.0
C8 O7 C5 C4 289.4 354.4
C13 C8 O7 C9 161.9 180.3
O7 C8 C13 C12 193.6 180.0
O7 C8 C13 H13 13.6 359.9
O7 C8 C9 C10 167.1 179.8
O7 C8 C9 H9 347.2 0.2
O7 C8 C13 C9 198.2 179.7
C13 C8 C9 C10 5.3 359.5
C13 C8 C9 H9 185.3 180.0
C12 C13 C8 H13 180.0 180.1
C8 C13 C12 C11 2.0 360.0
C8 C13 C12 H12 182.0 180.0
O7 C8 C9 C13 161.8 180.3
C9 C8 C13 C12 355.4 0.2
C9 C8 C13 H13 175.4 180.2
C11 C10 C9 C8 356.5 0.5
C8 C9 C10 H10 176.5 180.3
C10 C9 C8 H9 180.0 179.5
C12 C13 C8 C9 355.4 0.2
C8 C13 C12 H13 180.0 179.9
C11 C12 C13 H12 180.0 180.0
C13 C12 C11 C10 359.8 0.0
C13 C12 C11 H11 179.8 180.0
H13 C13 C8 C9 175.4 180.2
C8 C13 H13 C12 180.0 180.1
H13 C13 C12 C11 182.0 180.0
H13 C13 C12 H12 2.0 0.0
C11 C12 C13 H13 182.0 180.0
C13 C12 C11 H12 180.0 180.0
C10 C11 C12 H11 180.0 180.1
C12 C11 C10 C9 0.9 359.7
C12 C11 C10 H10 180.9 179.9
H12 C12 C13 H13 2.0 0.0
C13 C12 H12 C11 180.0 180.0
H12 C12 C11 C10 179.8 180.1
H12 C12 C11 H11 359.8 360.0
C8 C9 C10 C11 356.5 0.5
C10 C11 C12 H12 179.8 180.1
C12 C11 C10 H11 180.0 179.9
C9 C10 C11 H10 180.0 179.7
C11 C10 C9 H9 176.5 180.1
H11 C11 C12 H12 359.8 360.0
C12 C11 H11 C10 180.0 180.1
H11 C11 C10 C9 180.9 179.8
H11 C11 C10 H10 0.9 0.0
C8 C9 C10 H9 180.0 180.5
C9 C10 C11 H11 180.9 179.8
C11 C10 C9 H10 180.0 180.3
H10 C10 C11 H11 0.9 0.0
C11 C10 H10 C9 180.0 179.7
H10 C10 C9 H9 356.5 359.8
C8 C9 H9 C10 180.0 179.5
H9 C9 C10 H10 356.5 359.8
C5 C4 C3 H4 180.0 180.0
C2 C3 C4 H3 180.0 180.0
C4 C3 C2 C1 8.4 0.3
C4 C3 C2 C14 178.0 180.0
C5 C4 H4 C3 180.0 180.0
H4 C4 C3 C2 180.1 180.0
H4 C4 C3 H3 0.1 0.0
C6 C1 C2 C3 348.8 359.4
C2 C3 C4 H4 180.1 180.0
C4 C3 C2 H3 180.0 180.0
C1 C2 C3 C14 190.4 180.3
C3 C2 C1 H1 168.8 179.9
C3 C2 C14 C15 110.1 90.0
C3 C2 C14 H141 349.9 330.0
C3 C2 C14 H142 230.1 210.0
H3 C3 C4 H4 0.1 0.0
C4 C3 H3 C2 180.0 180.0
H3 C3 C2 C1 188.4 180.3
H3 C3 C2 C14 358.0 359.9
C6 C1 C2 H1 180.0 179.5
C1 C2 C3 H3 188.4 180.3
C3 C2 C1 C14 169.5 179.7
C1 C2 C14 C15 279.9 269.7
C1 C2 C14 H141 159.7 149.7
C1 C2 C14 H142 39.9 29.7
C14 C2 C3 H3 358.0 359.9
C3 C2 C14 C1 190.2 180.3
C14 C2 C1 H1 359.3 0.3
C15 C14 C2 H141 120.2 120.0
C15 C14 C2 H142 240.0 240.0
C2 C14 C15 C16 248.2 180.0
C2 C14 C15 H151 131.7 60.0
C2 C14 C15 H152 8.3 300.0
H141 C14 C2 H142 119.7 120.0
C6 C1 H1 C2 180.0 180.5
H1 C1 C2 C14 359.3 0.3
C2 C14 C15 H141 239.8 240.0
C2 C14 C15 H142 120.0 120.0
H141 C14 C15 H142 240.3 240.0
C16 C15 C14 H151 116.5 120.0
C16 C15 C14 H152 240.0 240.1
C14 C15 C16 C17 144.4 180.0
C14 C15 C16 H161 25.3 59.9
C14 C15 C16 H162 264.4 300.0
H151 C15 C14 H152 123.5 120.1
C2 C14 H141 C15 119.7 120.0
C2 C14 H141 H142 239.8 240.0
C15 C14 H141 H142 120.2 120.0
H141 C14 C15 C16 8.5 300.0
H141 C14 C15 H151 252.0 180.0
H141 C14 C15 H152 128.5 60.0
C2 C14 H142 C15 240.5 240.0
C2 C14 H142 H141 120.2 120.0
C15 C14 H142 H141 239.8 240.0
H142 C14 C15 C16 128.2 60.0
H142 C14 C15 H151 11.7 300.0
H142 C14 C15 H152 248.3 180.0
C16 C15 C14 H141 8.5 300.0
C16 C15 C14 H142 128.2 60.0
C14 C15 C16 H151 243.5 239.9
C14 C15 C16 H152 120.0 120.0
H151 C15 C16 H152 236.5 240.0
C17 C16 C15 H161 119.1 120.1
C17 C16 C15 H162 240.0 240.0
C15 C16 C17 C18 261.6 180.0
C15 C16 C17 H171 145.8 60.0
C15 C16 C17 H172 21.6 300.0
H161 C16 C15 H162 120.9 119.9
H151 C15 C14 H141 252.0 180.0
H151 C15 C14 H142 11.7 300.0
C14 C15 H151 C16 124.3 120.0
C14 C15 H151 H152 242.2 240.0
C16 C15 H151 H152 117.9 119.9
H151 C15 C16 C17 260.9 300.1
H151 C15 C16 H161 141.8 180.0
H151 C15 C16 H162 20.9 60.1
H152 C15 C14 H141 128.5 60.0
H152 C15 C14 H142 248.3 180.0
C14 C15 H152 C16 233.8 240.0
C14 C15 H152 H151 116.9 120.1
C16 C15 H152 H151 243.1 240.1
H152 C15 C16 C17 24.4 60.0
H152 C15 C16 H161 265.3 300.0
H152 C15 C16 H162 144.4 180.1
C17 C16 C15 H151 260.9 300.1
C17 C16 C15 H152 24.4 60.0
C15 C16 C17 H161 240.9 239.9
C15 C16 C17 H162 120.0 120.0
H161 C16 C17 H162 239.1 240.0
C18 C17 C16 H171 115.8 120.0
C18 C17 C16 H172 240.0 240.0
C16 C17 C18 H181 64.0 300.0
C16 C17 C18 H182 304.0 60.0
C16 C17 C18 H183 184.0 180.0
H171 C17 C16 H172 124.2 120.0
H161 C16 C15 H151 141.8 180.0
H161 C16 C15 H152 265.3 300.0
C15 C16 H161 C17 121.2 120.1
C15 C16 H161 H162 240.6 240.1
C17 C16 H161 H162 119.4 120.0
H161 C16 C17 C18 20.7 300.0
H161 C16 C17 H171 264.9 180.0
H161 C16 C17 H172 140.7 60.0
H162 C16 C15 H151 20.9 60.1
H162 C16 C15 H152 144.4 180.1
C15 C16 H162 C17 238.3 240.0
C15 C16 H162 H161 119.1 120.0
C17 C16 H162 H161 240.9 240.0
H162 C16 C17 C18 141.6 60.0
H162 C16 C17 H171 25.8 300.0
H162 C16 C17 H172 261.6 180.0
C18 C17 C16 H161 20.7 300.0
C18 C17 C16 H162 141.6 60.0
C16 C17 C18 H171 244.2 240.0
C16 C17 C18 H172 120.0 120.0
H171 C17 C18 H172 235.8 239.9
H181 C18 C17 H182 120.0 240.0
H181 C18 C17 H183 240.0 120.0
H182 C18 C17 H183 120.0 240.0
H171 C17 C16 H161 264.9 180.0
H171 C17 C16 H162 25.8 300.0
C16 C17 H171 C18 125.0 120.0
C16 C17 H171 H172 242.5 240.0
C18 C17 H171 H172 117.5 120.0
H171 C17 C18 H181 179.8 59.9
H171 C17 C18 H182 59.7 180.0
H171 C17 C18 H183 299.8 300.0
H172 C17 C16 H161 140.7 60.0
H172 C17 C16 H162 261.6 180.0
C16 C17 H172 C18 232.7 240.0
C16 C17 H172 H171 116.3 120.0
C18 C17 H172 H171 243.6 240.0
H172 C17 C18 H181 304.0 180.0
H172 C17 C18 H182 183.9 300.0
H172 C17 C18 H183 64.0 60.0
H181 C18 C17 H171 179.8 59.9
H181 C18 C17 H172 304.0 180.0
C17 C18 H181 H182 240.0 120.0
C17 C18 H181 H183 120.0 240.0
H182 C18 H181 H183 240.0 120.0
H182 C18 C17 H171 59.7 180.0
H182 C18 C17 H172 183.9 300.0
C17 C18 H182 H181 120.0 240.0
C17 C18 H182 H183 240.0 120.0
H181 C18 H182 H183 120.0 240.0
H183 C18 C17 H171 299.8 300.0
H183 C18 C17 H172 64.0 60.0
C17 C18 H183 H181 240.0 120.0
C17 C18 H183 H182 120.0 240.0
H181 C18 H183 H182 240.0 120.0