PDB Chemical Component 5PM
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5PM
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C1A |
N11 |
1.332 |
1.316 |
| N11 |
C1E |
1.338 |
1.330 |
| C1F |
N12 |
1.287 |
1.302 |
| N12 |
C1G |
1.456 |
1.367 |
| C1Q |
N13 |
1.456 |
1.366 |
| N13 |
C1T |
1.278 |
1.303 |
| N14 |
C1Y |
1.327 |
1.315 |
| N14 |
C1U |
1.377 |
1.330 |
| C1B |
C1A |
1.401 |
1.385 |
| C1A |
H1A |
1.080 |
1.080 |
| C1B |
C1C |
1.341 |
1.387 |
| C1B |
H1B |
1.080 |
1.080 |
| C1C |
C1D |
1.379 |
1.384 |
| C1C |
H1C |
1.080 |
1.080 |
| C1D |
C1E |
1.375 |
1.396 |
| C1D |
H1D |
1.080 |
1.080 |
| C1E |
C1F |
1.450 |
1.474 |
| C1F |
H1F |
1.080 |
1.080 |
| C1G |
C1L |
1.383 |
1.398 |
| C1G |
C1H |
1.376 |
1.398 |
| C1H |
C1I |
1.403 |
1.377 |
| C1H |
H1H |
1.080 |
1.080 |
| C1I |
C1J |
1.376 |
1.391 |
| C1I |
H1I |
1.080 |
1.081 |
| C1K |
C1J |
1.405 |
1.392 |
| C1J |
S1M |
1.513 |
1.762 |
| C1L |
C1K |
1.391 |
1.377 |
| C1K |
H1K |
1.080 |
1.081 |
| C1L |
H1L |
1.080 |
1.080 |
| S1M |
C1N |
1.515 |
1.762 |
| C1S |
C1N |
1.361 |
1.392 |
| C1N |
C1O |
1.374 |
1.392 |
| C1O |
C1P |
1.387 |
1.377 |
| C1O |
H1O |
1.080 |
1.080 |
| C1Q |
C1P |
1.357 |
1.398 |
| C1P |
H1P |
1.080 |
1.079 |
| C1R |
C1Q |
1.355 |
1.398 |
| C1S |
C1R |
1.374 |
1.377 |
| C1R |
H1R |
1.080 |
1.080 |
| C1S |
H1S |
1.080 |
1.080 |
| C1T |
C1U |
1.445 |
1.474 |
| C1T |
H1T |
1.080 |
1.080 |
| C1U |
C1V |
1.394 |
1.397 |
| C1V |
C1W |
1.380 |
1.384 |
| C1V |
H1V |
1.080 |
1.080 |
| C1X |
C1W |
1.387 |
1.387 |
| C1W |
H1W |
1.081 |
1.079 |
| C1Y |
C1X |
1.372 |
1.385 |
| C1X |
H1X |
1.080 |
1.080 |
| C1Y |
H1Y |
1.080 |
1.080 |
Bond Angles for 5PM
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1A |
N11 |
C1E |
116.8 |
121.6 |
| N11 |
C1E |
C1D |
121.6 |
120.5 |
| N11 |
C1E |
C1F |
111.5 |
119.8 |
| C1F |
N12 |
C1G |
116.9 |
119.9 |
| N12 |
C1G |
C1L |
117.4 |
120.1 |
| N12 |
C1G |
C1H |
123.7 |
120.1 |
| C1Q |
N13 |
C1T |
117.0 |
120.0 |
| N13 |
C1T |
C1U |
116.9 |
120.0 |
| N13 |
C1T |
H1T |
121.6 |
120.0 |
| C1U |
N14 |
C1Y |
118.3 |
121.6 |
| N14 |
C1Y |
C1X |
121.6 |
121.0 |
| N14 |
C1Y |
H1Y |
119.2 |
119.5 |
| N14 |
C1U |
C1T |
113.5 |
119.8 |
| N14 |
C1U |
C1V |
122.1 |
120.5 |
| C1B |
C1A |
H1A |
117.7 |
119.5 |
| C1C |
C1B |
H1B |
121.3 |
120.3 |
| C1B |
C1C |
C1D |
119.2 |
118.5 |
| C1B |
C1C |
H1C |
120.4 |
120.7 |
| C1D |
C1C |
H1C |
120.4 |
120.7 |
| C1C |
C1D |
C1E |
120.4 |
119.0 |
| C1C |
C1D |
H1D |
119.8 |
120.5 |
| C1E |
C1D |
H1D |
119.8 |
120.5 |
| C1D |
C1E |
C1F |
126.8 |
119.7 |
| C1E |
C1F |
H1F |
120.6 |
120.0 |
| C1H |
C1G |
C1L |
118.8 |
119.9 |
| C1G |
C1L |
C1K |
120.7 |
119.9 |
| C1G |
C1L |
H1L |
119.7 |
120.1 |
| C1G |
C1H |
C1I |
120.4 |
119.9 |
| C1G |
C1H |
H1H |
119.8 |
120.0 |
| C1I |
C1H |
H1H |
119.8 |
120.1 |
| C1H |
C1I |
C1J |
121.7 |
120.1 |
| C1H |
C1I |
H1I |
119.2 |
119.9 |
| C1J |
C1I |
H1I |
119.1 |
120.0 |
| C1I |
C1J |
S1M |
123.3 |
119.9 |
| C1K |
C1J |
S1M |
119.5 |
119.9 |
| C1J |
S1M |
C1N |
118.8 |
103.0 |
| C1L |
C1K |
H1K |
119.5 |
119.9 |
| S1M |
C1N |
C1O |
123.0 |
119.9 |
| C1N |
C1O |
C1P |
122.0 |
120.0 |
| C1N |
C1O |
H1O |
119.0 |
120.0 |
| C1P |
C1O |
H1O |
119.0 |
120.0 |
| C1O |
C1P |
H1P |
119.9 |
120.0 |
| C1Q |
C1P |
H1P |
119.9 |
120.0 |
| C1S |
C1R |
H1R |
119.8 |
120.0 |
| C1U |
C1T |
H1T |
121.6 |
120.0 |
| C1T |
C1U |
C1V |
124.4 |
119.7 |
| C1U |
C1V |
C1W |
118.8 |
119.0 |
| C1U |
C1V |
H1V |
120.6 |
120.5 |
| C1W |
C1V |
H1V |
120.6 |
120.5 |
| C1V |
C1W |
H1W |
121.1 |
120.7 |
| C1X |
C1W |
H1W |
121.1 |
120.8 |
| C1Y |
C1X |
H1X |
119.3 |
120.3 |
Torsion Angles for 5PM
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C1A |
N11 |
C1E |
C1D |
358.8 |
359.9 |
| C1A |
N11 |
C1E |
C1F |
180.5 |
179.9 |
| C1C |
C1D |
C1E |
N11 |
1.6 |
0.0 |
| N11 |
C1E |
C1D |
H1D |
181.6 |
180.1 |
| C1D |
C1E |
N11 |
C1F |
178.4 |
180.0 |
| N11 |
C1E |
C1F |
H1F |
178.9 |
179.9 |
| N11 |
C1E |
C1F |
N12 |
358.9 |
360.0 |
| C1F |
N12 |
C1G |
C1L |
73.0 |
135.0 |
| C1F |
N12 |
C1G |
C1H |
253.3 |
315.2 |
| C1H |
C1G |
N12 |
C1L |
180.3 |
180.2 |
| N12 |
C1G |
C1L |
C1K |
180.1 |
179.7 |
| N12 |
C1G |
C1L |
H1L |
0.1 |
360.0 |
| N12 |
C1G |
C1H |
C1I |
178.7 |
180.0 |
| N12 |
C1G |
C1H |
H1H |
358.7 |
0.0 |
| C1Q |
N13 |
C1T |
C1U |
182.0 |
180.0 |
| C1Q |
N13 |
C1T |
H1T |
2.0 |
0.1 |
| N14 |
C1U |
C1T |
N13 |
1.3 |
0.0 |
| C1U |
C1T |
N13 |
H1T |
180.0 |
179.9 |
| N13 |
C1T |
C1U |
C1V |
182.1 |
180.1 |
| C1Y |
N14 |
C1U |
C1T |
178.6 |
180.0 |
| C1Y |
N14 |
C1U |
C1V |
357.8 |
360.0 |
| N14 |
C1Y |
C1X |
H1X |
178.9 |
180.0 |
| N13 |
C1T |
C1U |
N14 |
1.3 |
0.0 |
| C1U |
N14 |
C1Y |
C1X |
2.3 |
360.0 |
| C1U |
N14 |
C1Y |
H1Y |
182.3 |
180.0 |
| N14 |
C1U |
C1T |
H1T |
181.3 |
180.0 |
| C1T |
C1U |
N14 |
C1V |
180.7 |
180.1 |
| N14 |
C1U |
C1V |
C1W |
0.8 |
0.0 |
| N14 |
C1U |
C1V |
H1V |
180.8 |
180.0 |
| C1B |
C1A |
N11 |
C1E |
360.0 |
0.1 |
| H1A |
C1A |
N11 |
C1E |
180.0 |
180.0 |
| C1C |
C1B |
C1A |
H1A |
180.8 |
180.0 |
| C1D |
C1C |
C1B |
H1C |
180.0 |
180.0 |
| C1B |
C1C |
C1D |
C1E |
359.3 |
0.0 |
| C1B |
C1C |
C1D |
H1D |
179.3 |
180.0 |
| H1B |
C1B |
C1A |
H1A |
0.8 |
360.0 |
| H1B |
C1B |
C1C |
C1D |
179.6 |
180.0 |
| H1B |
C1B |
C1C |
H1C |
359.6 |
360.0 |
| N11 |
C1E |
C1D |
C1C |
1.6 |
0.0 |
| C1D |
C1C |
C1B |
H1B |
179.6 |
180.0 |
| C1B |
C1C |
C1D |
H1C |
180.0 |
180.0 |
| C1E |
C1D |
C1C |
H1D |
180.0 |
180.1 |
| C1C |
C1D |
C1E |
C1F |
179.7 |
180.0 |
| H1C |
C1C |
C1B |
H1B |
359.6 |
360.0 |
| C1B |
C1C |
H1C |
C1D |
180.0 |
180.0 |
| H1C |
C1C |
C1D |
C1E |
179.3 |
180.1 |
| H1C |
C1C |
C1D |
H1D |
359.3 |
360.0 |
| N11 |
C1E |
C1D |
C1F |
181.9 |
180.0 |
| C1E |
C1D |
C1C |
H1C |
179.3 |
180.1 |
| C1C |
C1D |
C1E |
H1D |
180.0 |
179.9 |
| C1D |
C1E |
C1F |
H1F |
0.6 |
360.0 |
| H1D |
C1D |
C1C |
H1C |
359.3 |
360.0 |
| C1C |
C1D |
H1D |
C1E |
180.0 |
180.1 |
| H1D |
C1D |
C1E |
C1F |
359.7 |
0.1 |
| N11 |
C1E |
C1F |
C1D |
178.3 |
180.0 |
| C1E |
C1F |
N12 |
C1G |
181.3 |
180.0 |
| C1F |
C1E |
C1D |
H1D |
359.7 |
0.1 |
| H1F |
C1F |
N12 |
C1G |
1.2 |
0.1 |
| N12 |
C1G |
C1L |
C1H |
180.3 |
180.2 |
| C1L |
C1G |
C1H |
C1I |
359.0 |
0.2 |
| C1L |
C1G |
C1H |
H1H |
179.0 |
180.2 |
| C1G |
C1L |
C1K |
H1K |
179.8 |
180.2 |
| N12 |
C1G |
C1H |
C1L |
179.7 |
179.8 |
| C1H |
C1G |
C1L |
C1K |
359.8 |
359.5 |
| C1H |
C1G |
C1L |
H1L |
179.8 |
179.8 |
| C1I |
C1H |
C1G |
H1H |
180.0 |
180.0 |
| C1G |
C1H |
C1I |
C1J |
2.6 |
0.1 |
| C1G |
C1H |
C1I |
H1I |
182.7 |
180.0 |
| C1I |
C1H |
C1G |
C1L |
359.0 |
0.2 |
| C1G |
C1H |
C1I |
H1H |
180.0 |
180.0 |
| C1J |
C1I |
C1H |
H1I |
180.0 |
180.1 |
| C1H |
C1I |
C1J |
S1M |
177.4 |
180.0 |
| H1H |
C1H |
C1G |
C1L |
179.0 |
180.2 |
| C1G |
C1H |
H1H |
C1I |
180.0 |
180.0 |
| H1H |
C1H |
C1I |
C1J |
182.7 |
180.1 |
| H1H |
C1H |
C1I |
H1I |
2.7 |
360.0 |
| C1J |
C1I |
C1H |
H1H |
182.7 |
180.1 |
| C1H |
C1I |
C1J |
H1I |
180.0 |
179.9 |
| C1K |
C1J |
C1I |
S1M |
179.7 |
179.9 |
| C1I |
C1J |
S1M |
C1N |
216.4 |
354.3 |
| H1I |
C1I |
C1H |
H1H |
2.7 |
360.0 |
| C1H |
C1I |
H1I |
C1J |
180.0 |
180.1 |
| H1I |
C1I |
C1J |
S1M |
357.4 |
0.1 |
| C1G |
C1L |
C1K |
C1J |
359.8 |
0.5 |
| C1K |
C1J |
C1I |
H1I |
177.0 |
180.0 |
| C1I |
C1J |
C1K |
S1M |
180.3 |
180.1 |
| C1K |
C1J |
S1M |
C1N |
36.8 |
174.4 |
| S1M |
C1J |
C1I |
H1I |
357.4 |
0.1 |
| C1J |
S1M |
C1N |
C1O |
230.7 |
94.9 |
| C1G |
C1L |
C1K |
H1L |
180.0 |
180.2 |
| C1L |
C1K |
C1J |
S1M |
181.5 |
179.7 |
| H1K |
C1K |
C1J |
S1M |
1.4 |
360.0 |
| C1G |
C1L |
H1L |
C1K |
180.0 |
179.8 |
| H1L |
C1L |
C1K |
H1K |
359.8 |
0.0 |
| S1M |
C1N |
C1O |
C1P |
181.5 |
180.0 |
| S1M |
C1N |
C1O |
H1O |
1.5 |
359.9 |
| C1S |
C1N |
C1O |
H1O |
181.9 |
180.3 |
| C1P |
C1O |
C1N |
H1O |
180.0 |
180.1 |
| C1N |
C1O |
C1P |
H1P |
178.2 |
179.9 |
| C1N |
C1O |
C1P |
H1O |
180.0 |
179.9 |
| C1Q |
C1P |
C1O |
H1P |
180.0 |
180.0 |
| C1N |
C1O |
H1O |
C1P |
180.0 |
180.1 |
| H1O |
C1O |
C1P |
H1P |
358.2 |
360.0 |
| C1P |
C1Q |
N13 |
C1T |
243.1 |
135.0 |
| C1Q |
C1P |
C1O |
H1O |
178.2 |
180.0 |
| C1O |
C1P |
C1Q |
H1P |
180.0 |
180.0 |
| H1P |
C1P |
C1O |
H1O |
358.2 |
360.0 |
| C1R |
C1Q |
N13 |
C1T |
65.4 |
314.9 |
| C1R |
C1Q |
C1P |
H1P |
179.8 |
180.1 |
| H1S |
C1S |
C1R |
H1R |
358.3 |
0.0 |
| N13 |
C1T |
C1U |
H1T |
180.0 |
180.1 |
| C1T |
C1U |
N14 |
C1Y |
178.6 |
180.0 |
| N14 |
C1U |
C1T |
C1V |
179.2 |
179.9 |
| C1T |
C1U |
C1V |
C1W |
180.0 |
180.0 |
| C1T |
C1U |
C1V |
H1V |
0.0 |
360.0 |
| N13 |
C1T |
H1T |
C1U |
180.0 |
179.9 |
| H1T |
C1T |
C1U |
C1V |
2.1 |
0.0 |
| C1V |
C1U |
N14 |
C1Y |
357.8 |
360.0 |
| N14 |
C1U |
C1V |
C1T |
180.8 |
180.1 |
| C1V |
C1U |
C1T |
H1T |
2.1 |
0.0 |
| C1W |
C1V |
C1U |
H1V |
180.0 |
180.0 |
| C1U |
C1V |
C1W |
H1W |
180.4 |
180.0 |
| C1U |
C1V |
C1W |
H1V |
180.0 |
180.0 |
| C1X |
C1W |
C1V |
H1W |
180.0 |
180.0 |
| C1U |
C1V |
H1V |
C1W |
180.0 |
180.0 |
| H1V |
C1V |
C1W |
H1W |
0.4 |
360.0 |
| N14 |
C1Y |
C1X |
C1W |
358.9 |
0.0 |
| C1X |
C1W |
C1V |
H1V |
180.4 |
180.0 |
| C1V |
C1W |
C1X |
H1W |
180.0 |
180.0 |
| H1W |
C1W |
C1V |
H1V |
0.4 |
360.0 |
| N14 |
C1Y |
C1X |
H1Y |
180.0 |
180.0 |
| C1Y |
C1X |
C1W |
H1W |
179.7 |
180.0 |
| H1X |
C1X |
C1W |
H1W |
359.8 |
0.0 |
| N14 |
C1Y |
H1Y |
C1X |
180.0 |
180.0 |
| H1Y |
C1Y |
C1X |
H1X |
358.8 |
360.0 |