PDB Chemical Component 5P8
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5P8
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C29 |
N26 |
1.472 |
1.470 |
| O30 |
C27 |
1.238 |
1.234 |
| C25 |
N20 |
1.455 |
1.464 |
| N26 |
C27 |
1.441 |
1.347 |
| N26 |
C28 |
1.518 |
1.486 |
| N21 |
N20 |
1.333 |
1.392 |
| N21 |
C22 |
1.332 |
1.319 |
| N20 |
C19 |
1.383 |
1.373 |
| C27 |
C11 |
1.500 |
1.454 |
| C19 |
C23 |
1.435 |
1.433 |
| C19 |
C18 |
1.414 |
1.386 |
| C22 |
C28 |
1.518 |
1.497 |
| C22 |
C18 |
1.468 |
1.409 |
| C23 |
N24 |
1.159 |
1.135 |
| C18 |
C5 |
1.499 |
1.483 |
| C11 |
C12 |
1.436 |
1.409 |
| C11 |
C10 |
1.459 |
1.394 |
| C9 |
C8 |
1.542 |
1.527 |
| C8 |
C10 |
1.550 |
1.502 |
| C8 |
O7 |
1.456 |
1.429 |
| C6 |
C5 |
1.406 |
1.402 |
| C6 |
C1 |
1.419 |
1.386 |
| C5 |
C4 |
1.415 |
1.385 |
| C12 |
C13 |
1.409 |
1.371 |
| C10 |
C15 |
1.439 |
1.388 |
| O7 |
C1 |
1.384 |
1.364 |
| C1 |
C2 |
1.409 |
1.387 |
| C4 |
N3 |
1.387 |
1.327 |
| C2 |
N3 |
1.381 |
1.326 |
| C2 |
N17 |
1.413 |
1.391 |
| C13 |
C14 |
1.404 |
1.385 |
| C15 |
C14 |
1.411 |
1.380 |
| C14 |
F16 |
1.329 |
1.350 |
| C12 |
H1 |
1.080 |
1.083 |
| C13 |
H2 |
1.080 |
1.080 |
| C6 |
H3 |
1.080 |
1.070 |
| C15 |
H4 |
1.080 |
1.082 |
| C4 |
H5 |
1.080 |
1.076 |
| C28 |
H6 |
1.100 |
1.086 |
| C28 |
H7 |
1.100 |
1.100 |
| C8 |
H8 |
1.100 |
1.105 |
| C9 |
H9 |
1.100 |
1.090 |
| C9 |
H10 |
1.100 |
1.091 |
| C9 |
H11 |
1.100 |
1.091 |
| C25 |
H12 |
1.100 |
1.090 |
| C25 |
H13 |
1.100 |
1.090 |
| C25 |
H14 |
1.100 |
1.090 |
| C29 |
H15 |
1.100 |
1.090 |
| C29 |
H16 |
1.100 |
1.090 |
| C29 |
H17 |
1.100 |
1.090 |
| N17 |
H18 |
1.000 |
0.970 |
| N17 |
H19 |
1.000 |
0.970 |
Bond Angles for 5P8
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| N26 |
C29 |
H15 |
109.5 |
109.5 |
| N26 |
C29 |
H16 |
109.5 |
109.4 |
| N26 |
C29 |
H17 |
109.5 |
109.5 |
| C25 |
N20 |
N21 |
118.0 |
126.7 |
| N20 |
C25 |
H12 |
109.5 |
109.5 |
| N20 |
C25 |
H13 |
109.5 |
109.5 |
| N20 |
C25 |
H14 |
109.5 |
109.5 |
| N26 |
C28 |
H6 |
107.8 |
110.6 |
| N26 |
C28 |
H7 |
107.8 |
107.4 |
| C19 |
C23 |
N24 |
177.8 |
179.9 |
| C19 |
C18 |
C5 |
128.3 |
128.7 |
| C22 |
C28 |
H6 |
107.8 |
109.0 |
| C22 |
C28 |
H7 |
107.8 |
107.6 |
| C11 |
C12 |
H1 |
119.9 |
119.0 |
| C9 |
C8 |
O7 |
105.8 |
111.9 |
| C9 |
C8 |
H8 |
108.6 |
107.3 |
| O7 |
C8 |
H8 |
109.8 |
107.6 |
| C5 |
C6 |
C1 |
124.9 |
119.8 |
| C6 |
C5 |
C4 |
113.8 |
117.6 |
| C5 |
C6 |
H3 |
117.6 |
121.3 |
| C6 |
C1 |
C2 |
116.7 |
118.9 |
| C1 |
C6 |
H3 |
117.6 |
118.8 |
| C5 |
C4 |
N3 |
124.2 |
120.8 |
| C5 |
C4 |
H5 |
117.9 |
122.1 |
| C12 |
C13 |
C14 |
119.7 |
119.7 |
| C13 |
C12 |
H1 |
119.9 |
119.3 |
| C12 |
C13 |
H2 |
120.2 |
120.4 |
| C10 |
C15 |
C14 |
121.0 |
121.7 |
| C10 |
C15 |
H4 |
119.5 |
118.7 |
| C1 |
C2 |
N3 |
121.2 |
119.7 |
| C1 |
C2 |
N17 |
119.7 |
120.3 |
| C4 |
N3 |
C2 |
119.3 |
122.9 |
| N3 |
C4 |
H5 |
117.9 |
117.1 |
| N3 |
C2 |
N17 |
119.1 |
119.9 |
| C2 |
N17 |
H18 |
109.5 |
120.0 |
| C2 |
N17 |
H19 |
109.4 |
120.0 |
| C13 |
C14 |
C15 |
121.6 |
119.4 |
| C13 |
C14 |
F16 |
119.2 |
120.2 |
| C14 |
C13 |
H2 |
120.1 |
119.9 |
| C15 |
C14 |
F16 |
119.2 |
120.4 |
| C14 |
C15 |
H4 |
119.5 |
119.7 |
| H6 |
C28 |
H7 |
109.4 |
107.1 |
| H9 |
C9 |
H10 |
109.5 |
109.4 |
| H9 |
C9 |
H11 |
109.5 |
109.5 |
| H10 |
C9 |
H11 |
109.5 |
109.4 |
| H12 |
C25 |
H13 |
109.5 |
109.4 |
| H12 |
C25 |
H14 |
109.5 |
109.5 |
| H13 |
C25 |
H14 |
109.5 |
109.5 |
| H15 |
C29 |
H16 |
109.5 |
109.4 |
| H15 |
C29 |
H17 |
109.4 |
109.5 |
| H16 |
C29 |
H17 |
109.5 |
109.4 |
| H18 |
N17 |
H19 |
109.5 |
120.0 |
Torsion Angles for 5P8
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C29 |
N26 |
C28 |
H6 |
167.6 |
196.7 |
| C29 |
N26 |
C28 |
H7 |
285.6 |
80.1 |
| H15 |
C29 |
N26 |
H16 |
240.0 |
240.1 |
| H15 |
C29 |
N26 |
H17 |
120.0 |
120.1 |
| H16 |
C29 |
N26 |
H17 |
240.0 |
240.0 |
| H12 |
C25 |
N20 |
H13 |
240.0 |
240.0 |
| H12 |
C25 |
N20 |
H14 |
120.0 |
120.0 |
| H13 |
C25 |
N20 |
H14 |
240.0 |
240.0 |
| C22 |
C28 |
N26 |
H6 |
239.0 |
123.9 |
| C22 |
C28 |
N26 |
H7 |
121.0 |
240.5 |
| H6 |
C28 |
N26 |
H7 |
242.0 |
116.6 |
| N21 |
N20 |
C25 |
H12 |
0.0 |
90.1 |
| N21 |
N20 |
C25 |
H13 |
120.0 |
210.0 |
| N21 |
N20 |
C25 |
H14 |
240.0 |
330.0 |
| N21 |
C22 |
C28 |
H6 |
142.1 |
235.7 |
| N21 |
C22 |
C28 |
H7 |
24.0 |
351.5 |
| C27 |
C11 |
C12 |
H1 |
360.0 |
3.5 |
| C18 |
C19 |
C23 |
N24 |
239.5 |
228.9 |
| N26 |
C28 |
C22 |
H6 |
121.0 |
235.2 |
| N26 |
C28 |
C22 |
H7 |
239.0 |
119.4 |
| H6 |
C28 |
C22 |
H7 |
118.0 |
244.2 |
| C18 |
C5 |
C6 |
C1 |
178.9 |
170.4 |
| C18 |
C5 |
C6 |
H3 |
358.9 |
346.7 |
| C18 |
C5 |
C4 |
N3 |
180.9 |
186.4 |
| C18 |
C5 |
C4 |
H5 |
0.9 |
7.5 |
| C11 |
C12 |
C13 |
C14 |
0.1 |
359.3 |
| C13 |
C12 |
C11 |
H1 |
180.0 |
180.2 |
| C11 |
C12 |
C13 |
H2 |
180.1 |
179.0 |
| C10 |
C11 |
C12 |
H1 |
179.8 |
181.3 |
| C11 |
C10 |
C15 |
C14 |
359.9 |
0.2 |
| C11 |
C10 |
C15 |
H4 |
179.9 |
180.3 |
| O7 |
C8 |
C9 |
H8 |
117.8 |
117.8 |
| C8 |
C10 |
C15 |
H4 |
0.3 |
0.8 |
| C9 |
C8 |
O7 |
H8 |
243.0 |
242.4 |
| C19 |
C18 |
C5 |
C6 |
152.8 |
183.1 |
| C5 |
C6 |
C1 |
C2 |
0.2 |
6.1 |
| C1 |
C6 |
C5 |
H3 |
180.0 |
183.7 |
| C6 |
C5 |
C4 |
N3 |
360.0 |
3.0 |
| C6 |
C5 |
C4 |
H5 |
180.0 |
184.1 |
| C1 |
C6 |
C5 |
C4 |
359.8 |
353.4 |
| C5 |
C6 |
C1 |
H3 |
180.0 |
176.4 |
| C6 |
C1 |
C2 |
N3 |
0.0 |
358.1 |
| C6 |
C1 |
C2 |
N17 |
180.2 |
178.0 |
| C4 |
C5 |
C6 |
C1 |
359.8 |
353.4 |
| C4 |
C5 |
C6 |
H3 |
179.8 |
169.8 |
| C5 |
C4 |
N3 |
C2 |
0.2 |
1.1 |
| N3 |
C4 |
C5 |
H5 |
180.0 |
178.9 |
| C11 |
C12 |
C13 |
H1 |
180.0 |
179.8 |
| C12 |
C13 |
C14 |
C15 |
359.9 |
359.6 |
| C12 |
C13 |
C14 |
F16 |
179.9 |
179.2 |
| C14 |
C13 |
C12 |
H2 |
180.0 |
180.3 |
| C13 |
C14 |
C15 |
C10 |
0.1 |
0.6 |
| C10 |
C15 |
C14 |
F16 |
180.1 |
181.0 |
| C14 |
C15 |
C10 |
H4 |
180.0 |
179.9 |
| O7 |
C1 |
C6 |
H3 |
0.7 |
11.3 |
| C2 |
C1 |
C6 |
H3 |
180.2 |
189.6 |
| C4 |
N3 |
C2 |
C1 |
359.8 |
358.2 |
| N3 |
C2 |
C1 |
N17 |
179.8 |
180.1 |
| C1 |
C2 |
N17 |
H18 |
179.8 |
359.9 |
| C1 |
C2 |
N17 |
H19 |
299.8 |
180.0 |
| C5 |
C4 |
N3 |
H5 |
180.0 |
181.0 |
| C1 |
C2 |
N3 |
C4 |
359.8 |
358.2 |
| C4 |
N3 |
C2 |
N17 |
179.5 |
178.3 |
| C1 |
C2 |
N3 |
N17 |
180.2 |
179.9 |
| C2 |
N3 |
C4 |
H5 |
180.3 |
180.1 |
| N3 |
C2 |
N17 |
H18 |
0.0 |
179.8 |
| N3 |
C2 |
N17 |
H19 |
120.0 |
359.9 |
| C1 |
C2 |
N17 |
N3 |
179.8 |
180.1 |
| H18 |
N17 |
C2 |
H19 |
240.0 |
179.9 |
| C14 |
C13 |
C12 |
H1 |
180.1 |
179.5 |
| C12 |
C13 |
C14 |
H2 |
180.0 |
179.7 |
| C10 |
C15 |
C14 |
C13 |
0.1 |
0.6 |
| C15 |
C14 |
C13 |
F16 |
180.0 |
180.4 |
| C13 |
C14 |
C15 |
H4 |
180.1 |
180.5 |
| C10 |
C15 |
C14 |
H4 |
180.0 |
180.1 |
| C13 |
C14 |
C15 |
F16 |
180.0 |
179.6 |
| C15 |
C14 |
C13 |
H2 |
179.9 |
179.9 |
| C13 |
C14 |
F16 |
C15 |
180.0 |
180.4 |
| F16 |
C14 |
C13 |
H2 |
359.9 |
359.5 |
| F16 |
C14 |
C15 |
H4 |
0.1 |
1.0 |
| H1 |
C12 |
C13 |
C14 |
180.1 |
179.5 |
| H1 |
C12 |
C13 |
H2 |
0.1 |
359.2 |
| C12 |
C13 |
H2 |
C14 |
180.0 |
180.3 |
| H2 |
C13 |
C12 |
H1 |
0.1 |
359.2 |
| H2 |
C13 |
C14 |
C15 |
179.9 |
179.9 |
| H2 |
C13 |
C14 |
F16 |
359.9 |
359.5 |
| C5 |
C6 |
H3 |
C1 |
180.0 |
183.6 |
| H3 |
C6 |
C5 |
C4 |
179.8 |
169.8 |
| H3 |
C6 |
C1 |
C2 |
180.2 |
189.6 |
| C10 |
C15 |
H4 |
C14 |
180.0 |
179.9 |
| H4 |
C15 |
C14 |
F16 |
0.1 |
1.0 |
| C5 |
C4 |
H5 |
N3 |
180.0 |
178.9 |
| H5 |
C4 |
N3 |
C2 |
180.3 |
180.1 |
| N26 |
C28 |
H6 |
H7 |
117.0 |
243.3 |
| C22 |
C28 |
H6 |
H7 |
243.0 |
116.1 |
| N26 |
C28 |
H7 |
H6 |
243.0 |
118.9 |
| C22 |
C28 |
H7 |
H6 |
117.0 |
242.9 |
| C9 |
C8 |
H8 |
O7 |
115.2 |
120.6 |
| H9 |
C9 |
C8 |
O7 |
57.5 |
294.1 |
| H9 |
C9 |
C8 |
H8 |
299.7 |
176.3 |
| H10 |
C9 |
H9 |
H11 |
120.0 |
119.9 |
| H10 |
C9 |
C8 |
O7 |
177.5 |
54.1 |
| H10 |
C9 |
C8 |
H8 |
59.7 |
296.3 |
| H9 |
C9 |
H10 |
H11 |
240.0 |
240.0 |
| H11 |
C9 |
C8 |
O7 |
297.5 |
174.0 |
| H11 |
C9 |
C8 |
H8 |
179.7 |
56.2 |
| H9 |
C9 |
H11 |
H10 |
120.0 |
120.0 |
| H12 |
C25 |
N20 |
N21 |
0.0 |
90.1 |
| N20 |
C25 |
H12 |
H13 |
120.0 |
120.0 |
| N20 |
C25 |
H12 |
H14 |
240.0 |
240.0 |
| H13 |
C25 |
H12 |
H14 |
120.0 |
120.0 |
| H13 |
C25 |
N20 |
N21 |
120.0 |
210.0 |
| N20 |
C25 |
H13 |
H12 |
240.0 |
240.0 |
| N20 |
C25 |
H13 |
H14 |
120.0 |
120.0 |
| H12 |
C25 |
H13 |
H14 |
240.0 |
240.0 |
| H14 |
C25 |
N20 |
N21 |
240.0 |
330.0 |
| N20 |
C25 |
H14 |
H12 |
120.0 |
120.0 |
| N20 |
C25 |
H14 |
H13 |
240.0 |
240.0 |
| H12 |
C25 |
H14 |
H13 |
120.0 |
120.0 |
| N26 |
C29 |
H15 |
H16 |
120.0 |
119.9 |
| N26 |
C29 |
H15 |
H17 |
240.0 |
239.9 |
| H16 |
C29 |
H15 |
H17 |
120.0 |
119.9 |
| N26 |
C29 |
H16 |
H15 |
239.9 |
240.0 |
| N26 |
C29 |
H16 |
H17 |
120.0 |
120.0 |
| H15 |
C29 |
H16 |
H17 |
240.1 |
240.0 |
| N26 |
C29 |
H17 |
H15 |
120.0 |
120.1 |
| N26 |
C29 |
H17 |
H16 |
240.0 |
240.0 |
| H15 |
C29 |
H17 |
H16 |
120.0 |
119.9 |
| C2 |
N17 |
H18 |
H19 |
120.0 |
180.1 |
| C2 |
N17 |
H19 |
H18 |
240.0 |
179.9 |