PDB Chemical Component 5P3
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5P3
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C2 |
C1 |
1.398 |
1.396 |
C1 |
C6 |
1.400 |
1.402 |
C1 |
C7 |
1.538 |
1.474 |
C3 |
C2 |
1.387 |
1.390 |
C2 |
H2 |
1.080 |
1.080 |
C12 |
C3 |
1.425 |
1.484 |
C3 |
C4 |
1.408 |
1.396 |
C4 |
C5 |
1.389 |
1.380 |
C4 |
H4 |
1.080 |
1.079 |
C5 |
C6 |
1.381 |
1.389 |
C5 |
CL11 |
1.729 |
1.735 |
C6 |
O10 |
1.374 |
1.356 |
O8 |
C7 |
1.275 |
1.214 |
C7 |
O9 |
1.255 |
1.348 |
O9 |
HO9 |
0.950 |
0.966 |
O10 |
HO10 |
0.950 |
0.967 |
C13 |
C12 |
1.429 |
1.394 |
C17 |
C12 |
1.381 |
1.393 |
C14 |
C13 |
1.385 |
1.381 |
C13 |
H13 |
1.080 |
1.081 |
C15 |
C14 |
1.380 |
1.383 |
C14 |
H14 |
1.080 |
1.079 |
C15 |
C16 |
1.391 |
1.383 |
C15 |
H15 |
1.080 |
1.081 |
C16 |
C17 |
1.389 |
1.381 |
C16 |
H16 |
1.080 |
1.080 |
C17 |
H17 |
1.080 |
1.079 |
Bond Angles for 5P3
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
C1 |
C6 |
120.4 |
119.8 |
C2 |
C1 |
C7 |
121.4 |
120.1 |
C6 |
C1 |
C7 |
118.2 |
120.1 |
C1 |
C6 |
C5 |
118.3 |
119.9 |
C1 |
C6 |
O10 |
120.7 |
120.1 |
C1 |
C7 |
O9 |
115.0 |
120.0 |
C3 |
C2 |
H2 |
119.1 |
120.1 |
C3 |
C4 |
C5 |
121.5 |
120.3 |
C3 |
C4 |
H4 |
119.2 |
119.9 |
C5 |
C4 |
H4 |
119.3 |
119.8 |
C4 |
C5 |
C6 |
121.1 |
120.2 |
C4 |
C5 |
CL11 |
119.4 |
119.9 |
C6 |
C5 |
CL11 |
119.5 |
119.9 |
C5 |
C6 |
O10 |
121.0 |
120.0 |
C6 |
O10 |
HO10 |
109.5 |
114.0 |
O8 |
C7 |
O9 |
125.1 |
120.0 |
C7 |
O9 |
HO9 |
109.5 |
117.1 |
C14 |
C13 |
H13 |
120.6 |
120.1 |
C15 |
C14 |
H14 |
119.2 |
120.0 |
C16 |
C15 |
H15 |
119.8 |
119.9 |
C15 |
C16 |
C17 |
118.4 |
120.1 |
C15 |
C16 |
H16 |
120.8 |
119.9 |
C17 |
C16 |
H16 |
120.8 |
119.9 |
C16 |
C17 |
H17 |
118.7 |
120.1 |
Torsion Angles for 5P3
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C6 |
C1 |
C2 |
C7 |
175.9 |
180.3 |
C2 |
C1 |
C6 |
C5 |
1.4 |
359.9 |
C2 |
C1 |
C6 |
O10 |
182.5 |
179.7 |
C2 |
C1 |
C7 |
O9 |
170.6 |
0.3 |
C2 |
C1 |
C6 |
C7 |
183.9 |
179.7 |
C6 |
C1 |
C7 |
O9 |
354.6 |
180.0 |
C4 |
C5 |
C6 |
C1 |
0.5 |
0.1 |
C1 |
C6 |
C5 |
CL11 |
179.2 |
180.0 |
C5 |
C6 |
C1 |
O10 |
178.9 |
180.2 |
C1 |
C6 |
O10 |
HO10 |
180.0 |
90.0 |
C2 |
C1 |
C7 |
C6 |
176.0 |
180.3 |
C7 |
C1 |
C6 |
C5 |
177.4 |
180.2 |
C7 |
C1 |
C6 |
O10 |
358.6 |
0.0 |
O8 |
C7 |
C1 |
O9 |
184.3 |
180.1 |
C1 |
C7 |
O9 |
HO9 |
184.6 |
180.0 |
C3 |
C2 |
C1 |
C6 |
357.8 |
0.0 |
C3 |
C2 |
C1 |
C7 |
181.9 |
179.7 |
H2 |
C2 |
C1 |
C6 |
177.8 |
180.0 |
H2 |
C2 |
C1 |
C7 |
1.9 |
359.6 |
C12 |
C3 |
C2 |
H2 |
6.6 |
0.0 |
C12 |
C3 |
C4 |
H4 |
355.7 |
0.1 |
C4 |
C3 |
C2 |
H2 |
181.0 |
180.1 |
C5 |
C4 |
C3 |
H4 |
180.0 |
180.0 |
C3 |
C4 |
C5 |
C6 |
358.4 |
360.0 |
C3 |
C4 |
C5 |
CL11 |
179.6 |
180.0 |
C1 |
C6 |
C5 |
C4 |
0.5 |
0.1 |
C3 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
C6 |
C5 |
C4 |
CL11 |
178.8 |
179.9 |
C4 |
C5 |
C6 |
O10 |
179.3 |
180.3 |
C3 |
C4 |
H4 |
C5 |
180.0 |
180.0 |
H4 |
C4 |
C5 |
C6 |
178.4 |
179.9 |
H4 |
C4 |
C5 |
CL11 |
359.6 |
0.0 |
C5 |
C6 |
C1 |
C7 |
177.4 |
180.2 |
C1 |
C6 |
C5 |
O10 |
181.1 |
179.8 |
C6 |
C5 |
C4 |
H4 |
178.4 |
179.9 |
C4 |
C5 |
C6 |
CL11 |
181.2 |
180.1 |
C5 |
C6 |
O10 |
HO10 |
1.2 |
269.8 |
CL11 |
C5 |
C4 |
H4 |
359.6 |
0.0 |
C4 |
C5 |
CL11 |
C6 |
178.8 |
179.9 |
CL11 |
C5 |
C6 |
O10 |
358.1 |
0.2 |
O10 |
C6 |
C1 |
C7 |
358.6 |
0.0 |
C1 |
C6 |
O10 |
C5 |
178.8 |
180.2 |
O10 |
C6 |
C5 |
CL11 |
358.1 |
0.2 |
C1 |
C7 |
O8 |
O9 |
175.3 |
179.9 |
O8 |
C7 |
O9 |
HO9 |
0.0 |
359.9 |
C15 |
C14 |
C13 |
H13 |
181.7 |
180.1 |
H14 |
C14 |
C13 |
H13 |
1.8 |
0.0 |
C16 |
C15 |
C14 |
H14 |
182.5 |
180.0 |
C17 |
C16 |
C15 |
H16 |
180.0 |
179.6 |
C15 |
C16 |
C17 |
H17 |
184.8 |
180.0 |
H15 |
C15 |
C14 |
H14 |
2.5 |
0.0 |
H15 |
C15 |
C16 |
C17 |
174.3 |
179.7 |
H15 |
C15 |
C16 |
H16 |
354.3 |
0.1 |
C17 |
C16 |
C15 |
H15 |
174.3 |
179.7 |
C15 |
C16 |
C17 |
H16 |
180.0 |
180.4 |
H16 |
C16 |
C15 |
H15 |
354.3 |
0.1 |
C15 |
C16 |
H16 |
C17 |
180.0 |
179.6 |
H16 |
C16 |
C17 |
H17 |
4.8 |
359.6 |
H17 |
C17 |
C16 |
H16 |
4.8 |
359.6 |