PDB Chemical Component 5OH
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5OH
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
C |
CA |
1.533 |
1.507 |
C |
OXT |
1.430 |
1.343 |
N |
CA |
1.459 |
1.469 |
N |
H |
1.000 |
1.009 |
N |
H2 |
1.000 |
1.009 |
O |
C |
1.230 |
1.208 |
CA |
CB |
1.533 |
1.530 |
CA |
HA |
1.100 |
1.090 |
CB |
CR |
1.531 |
1.536 |
CB |
HP |
1.099 |
1.090 |
NP |
CB |
1.470 |
1.471 |
NP |
CQ |
1.401 |
1.375 |
NP |
HNP |
1.000 |
0.970 |
CQ |
NR |
1.400 |
1.293 |
NQ |
CQ |
1.330 |
1.375 |
NQ |
HNQ |
1.000 |
0.970 |
NQ |
HNQA |
1.000 |
0.970 |
CR |
HR |
1.100 |
1.091 |
CR |
HRA |
1.100 |
1.090 |
NR |
CS |
1.472 |
1.458 |
CS |
CR |
1.527 |
1.530 |
CS |
OS |
1.430 |
1.429 |
CS |
HS |
1.100 |
1.090 |
OS |
HOS |
0.950 |
0.967 |
OXT |
HXT |
0.950 |
0.967 |
Bond Angles for 5OH
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
CA |
C |
OXT |
119.4 |
120.0 |
C |
CA |
N |
110.4 |
109.5 |
O |
C |
CA |
121.1 |
120.0 |
C |
CA |
CB |
109.3 |
109.5 |
C |
CA |
HA |
110.0 |
109.5 |
O |
C |
OXT |
119.5 |
120.0 |
C |
OXT |
HXT |
109.5 |
117.0 |
CA |
N |
H |
109.5 |
111.0 |
CA |
N |
H2 |
109.5 |
110.9 |
N |
CA |
CB |
112.6 |
109.5 |
N |
CA |
HA |
106.6 |
109.5 |
H |
N |
H2 |
109.5 |
111.0 |
CB |
CA |
HA |
107.8 |
109.5 |
CA |
CB |
CR |
112.4 |
109.9 |
CA |
CB |
HP |
106.5 |
109.8 |
CR |
CB |
HP |
108.1 |
109.9 |
NP |
CB |
CR |
109.2 |
107.4 |
CB |
CR |
HR |
109.4 |
109.6 |
CB |
CR |
HRA |
109.4 |
109.6 |
NP |
CB |
HP |
109.9 |
109.9 |
CQ |
NP |
HNP |
119.2 |
120.6 |
NP |
CQ |
NR |
120.5 |
122.3 |
NQ |
CQ |
NR |
119.9 |
118.8 |
CQ |
NR |
CS |
120.6 |
123.7 |
HNQ |
NQ |
HNQA |
119.9 |
120.0 |
HR |
CR |
HRA |
109.5 |
109.6 |
CS |
CR |
HR |
109.4 |
109.6 |
CS |
CR |
HRA |
109.4 |
109.9 |
NR |
CS |
OS |
109.8 |
109.2 |
NR |
CS |
HS |
109.0 |
109.2 |
OS |
CS |
HS |
109.4 |
109.2 |
CS |
OS |
HOS |
109.5 |
114.0 |
Torsion Angles for 5OH
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
O |
C |
CA |
OXT |
180.0 |
179.7 |
CA |
C |
OXT |
HXT |
180.0 |
180.0 |
C |
CA |
N |
H |
180.0 |
296.1 |
C |
CA |
N |
H2 |
300.0 |
60.0 |
N |
CA |
C |
CB |
235.6 |
240.0 |
N |
CA |
C |
HA |
117.4 |
120.0 |
CB |
CA |
C |
HA |
241.8 |
240.0 |
C |
CA |
CB |
CR |
168.5 |
66.0 |
C |
CA |
CB |
HP |
50.4 |
305.0 |
OXT |
C |
CA |
N |
43.4 |
160.0 |
O |
C |
OXT |
CA |
180.0 |
180.3 |
OXT |
C |
CA |
CB |
167.8 |
280.0 |
OXT |
C |
CA |
HA |
286.0 |
40.0 |
N |
CA |
C |
OXT |
43.4 |
160.0 |
O |
C |
CA |
N |
223.4 |
339.7 |
C |
CA |
N |
CB |
122.5 |
120.0 |
C |
CA |
N |
HA |
240.5 |
240.0 |
H |
N |
CA |
H2 |
240.0 |
236.1 |
CB |
CA |
N |
HA |
118.0 |
120.0 |
N |
CA |
CB |
CR |
291.6 |
186.0 |
N |
CA |
CB |
HP |
173.5 |
65.0 |
CA |
N |
H |
H2 |
120.0 |
123.8 |
H |
N |
CA |
CB |
57.5 |
176.1 |
H |
N |
CA |
HA |
299.5 |
56.1 |
CA |
N |
H2 |
H |
240.0 |
236.1 |
H2 |
N |
CA |
CB |
177.5 |
300.0 |
H2 |
N |
CA |
HA |
59.5 |
179.9 |
CA |
C |
O |
OXT |
180.0 |
180.3 |
O |
C |
CA |
CB |
347.8 |
99.7 |
O |
C |
CA |
HA |
106.0 |
219.7 |
O |
C |
OXT |
HXT |
0.0 |
0.2 |
CB |
CA |
C |
OXT |
167.8 |
280.0 |
C |
CA |
CB |
N |
236.9 |
240.0 |
C |
CA |
CB |
HA |
119.6 |
120.0 |
CB |
CA |
N |
H |
57.5 |
176.1 |
CB |
CA |
N |
H2 |
177.5 |
300.0 |
N |
CA |
CB |
HA |
242.7 |
240.0 |
CR |
CB |
CA |
HP |
118.2 |
121.0 |
NP |
CB |
CA |
CR |
122.4 |
118.0 |
CA |
CB |
CR |
HR |
186.7 |
179.7 |
CA |
CB |
CR |
HRA |
306.7 |
300.1 |
NP |
CB |
CA |
HP |
240.6 |
239.0 |
HA |
CA |
C |
OXT |
286.0 |
40.0 |
C |
CA |
HA |
N |
119.8 |
120.0 |
C |
CA |
HA |
CB |
240.9 |
240.0 |
HA |
CA |
N |
H |
299.5 |
56.1 |
HA |
CA |
N |
H2 |
59.5 |
179.9 |
N |
CA |
HA |
CB |
121.1 |
120.0 |
HA |
CA |
CB |
CR |
49.0 |
306.0 |
HA |
CA |
CB |
HP |
290.8 |
185.0 |
CR |
CB |
CA |
HA |
49.0 |
306.0 |
CA |
CB |
CR |
HP |
242.8 |
239.0 |
NP |
CB |
CR |
HP |
119.5 |
119.6 |
HR |
CR |
CB |
HRA |
240.0 |
239.6 |
CS |
CR |
CB |
HR |
240.0 |
240.3 |
CS |
CR |
CB |
HRA |
120.0 |
120.0 |
HP |
CB |
CA |
HA |
290.8 |
185.0 |
CA |
CB |
HP |
CR |
121.0 |
121.0 |
NP |
CB |
HP |
CR |
241.0 |
242.0 |
HP |
CB |
CR |
HR |
303.9 |
300.7 |
HP |
CB |
CR |
HRA |
63.9 |
61.1 |
NP |
CB |
CA |
HA |
171.4 |
64.0 |
CA |
CB |
NP |
CR |
235.7 |
240.5 |
CA |
CB |
NP |
HP |
117.3 |
120.9 |
CR |
CB |
NP |
HP |
241.6 |
240.4 |
NP |
CB |
CR |
HR |
63.4 |
60.3 |
NP |
CB |
CR |
HRA |
183.4 |
180.6 |
CQ |
NP |
CB |
CR |
28.3 |
42.3 |
CQ |
NP |
CB |
HP |
146.7 |
161.8 |
NQ |
CQ |
NP |
NR |
181.3 |
180.0 |
NP |
CQ |
NR |
CS |
0.1 |
1.0 |
HNP |
NP |
CB |
CR |
208.3 |
222.3 |
HNP |
NP |
CB |
HP |
326.7 |
341.8 |
HNP |
NP |
CQ |
NR |
180.3 |
167.1 |
NR |
CQ |
NP |
HNP |
180.3 |
167.1 |
CQ |
NR |
CS |
OS |
210.3 |
218.9 |
CQ |
NR |
CS |
HS |
90.5 |
99.5 |
NQ |
CQ |
NP |
HNP |
1.6 |
347.1 |
NP |
CQ |
NQ |
NR |
178.7 |
180.0 |
NQ |
CQ |
NR |
CS |
178.8 |
181.0 |
HNQ |
NQ |
CQ |
NR |
360.0 |
180.1 |
HNQA |
NQ |
CQ |
NR |
180.0 |
359.9 |
HR |
CR |
CB |
HP |
303.9 |
300.7 |
CB |
CR |
HR |
HRA |
119.9 |
120.4 |
CS |
CR |
HR |
HRA |
240.1 |
239.3 |
HRA |
CR |
CB |
HP |
63.9 |
61.1 |
CB |
CR |
HRA |
HR |
240.1 |
239.6 |
CS |
CR |
HRA |
HR |
119.9 |
120.5 |
NR |
CS |
CR |
HR |
297.4 |
289.7 |
NR |
CS |
CR |
HRA |
177.4 |
169.2 |
OS |
CS |
NR |
HS |
119.8 |
119.4 |
NR |
CS |
OS |
HOS |
180.0 |
300.0 |
CS |
CR |
CB |
HP |
183.9 |
181.1 |
CB |
CR |
CS |
HR |
120.0 |
119.7 |
CB |
CR |
CS |
HRA |
240.0 |
240.2 |
CQ |
NR |
CS |
CR |
330.6 |
339.3 |
HR |
CR |
CS |
HRA |
120.0 |
120.5 |
OS |
CS |
CR |
HR |
58.0 |
50.0 |
OS |
CS |
CR |
HRA |
298.0 |
289.5 |
NR |
CS |
OS |
HS |
240.4 |
240.6 |
HS |
CS |
CR |
HR |
177.8 |
169.5 |
HS |
CS |
CR |
HRA |
57.8 |
49.0 |
NR |
CS |
HS |
OS |
120.1 |
119.4 |
HS |
CS |
OS |
HOS |
299.5 |
59.4 |
HOS |
OS |
CS |
HS |
299.5 |
59.4 |