PDB Chemical Component 5OH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5OH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C CA 1.533 1.507
C OXT 1.430 1.343
N CA 1.459 1.469
N H 1.000 1.009
N H2 1.000 1.009
O C 1.230 1.208
CA CB 1.533 1.530
CA HA 1.100 1.090
CB CR 1.531 1.536
CB HP 1.099 1.090
NP CB 1.470 1.471
NP CQ 1.401 1.375
NP HNP 1.000 0.970
CQ NR 1.400 1.293
NQ CQ 1.330 1.375
NQ HNQ 1.000 0.970
NQ HNQA 1.000 0.970
CR HR 1.100 1.091
CR HRA 1.100 1.090
NR CS 1.472 1.458
CS CR 1.527 1.530
CS OS 1.430 1.429
CS HS 1.100 1.090
OS HOS 0.950 0.967
OXT HXT 0.950 0.967

Bond Angles for 5OH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
CA C OXT 119.4 120.0
C CA N 110.4 109.5
O C CA 121.1 120.0
C CA CB 109.3 109.5
C CA HA 110.0 109.5
O C OXT 119.5 120.0
C OXT HXT 109.5 117.0
CA N H 109.5 111.0
CA N H2 109.5 110.9
N CA CB 112.6 109.5
N CA HA 106.6 109.5
H N H2 109.5 111.0
CB CA HA 107.8 109.5
CA CB CR 112.4 109.9
CA CB HP 106.5 109.8
CR CB HP 108.1 109.9
NP CB CR 109.2 107.4
CB CR HR 109.4 109.6
CB CR HRA 109.4 109.6
NP CB HP 109.9 109.9
CQ NP HNP 119.2 120.6
NP CQ NR 120.5 122.3
NQ CQ NR 119.9 118.8
CQ NR CS 120.6 123.7
HNQ NQ HNQA 119.9 120.0
HR CR HRA 109.5 109.6
CS CR HR 109.4 109.6
CS CR HRA 109.4 109.9
NR CS OS 109.8 109.2
NR CS HS 109.0 109.2
OS CS HS 109.4 109.2
CS OS HOS 109.5 114.0

Torsion Angles for 5OH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O C CA OXT 180.0 179.7
CA C OXT HXT 180.0 180.0
C CA N H 180.0 296.1
C CA N H2 300.0 60.0
N CA C CB 235.6 240.0
N CA C HA 117.4 120.0
CB CA C HA 241.8 240.0
C CA CB CR 168.5 66.0
C CA CB HP 50.4 305.0
OXT C CA N 43.4 160.0
O C OXT CA 180.0 180.3
OXT C CA CB 167.8 280.0
OXT C CA HA 286.0 40.0
N CA C OXT 43.4 160.0
O C CA N 223.4 339.7
C CA N CB 122.5 120.0
C CA N HA 240.5 240.0
H N CA H2 240.0 236.1
CB CA N HA 118.0 120.0
N CA CB CR 291.6 186.0
N CA CB HP 173.5 65.0
CA N H H2 120.0 123.8
H N CA CB 57.5 176.1
H N CA HA 299.5 56.1
CA N H2 H 240.0 236.1
H2 N CA CB 177.5 300.0
H2 N CA HA 59.5 179.9
CA C O OXT 180.0 180.3
O C CA CB 347.8 99.7
O C CA HA 106.0 219.7
O C OXT HXT 0.0 0.2
CB CA C OXT 167.8 280.0
C CA CB N 236.9 240.0
C CA CB HA 119.6 120.0
CB CA N H 57.5 176.1
CB CA N H2 177.5 300.0
N CA CB HA 242.7 240.0
CR CB CA HP 118.2 121.0
NP CB CA CR 122.4 118.0
CA CB CR HR 186.7 179.7
CA CB CR HRA 306.7 300.1
NP CB CA HP 240.6 239.0
HA CA C OXT 286.0 40.0
C CA HA N 119.8 120.0
C CA HA CB 240.9 240.0
HA CA N H 299.5 56.1
HA CA N H2 59.5 179.9
N CA HA CB 121.1 120.0
HA CA CB CR 49.0 306.0
HA CA CB HP 290.8 185.0
CR CB CA HA 49.0 306.0
CA CB CR HP 242.8 239.0
NP CB CR HP 119.5 119.6
HR CR CB HRA 240.0 239.6
CS CR CB HR 240.0 240.3
CS CR CB HRA 120.0 120.0
HP CB CA HA 290.8 185.0
CA CB HP CR 121.0 121.0
NP CB HP CR 241.0 242.0
HP CB CR HR 303.9 300.7
HP CB CR HRA 63.9 61.1
NP CB CA HA 171.4 64.0
CA CB NP CR 235.7 240.5
CA CB NP HP 117.3 120.9
CR CB NP HP 241.6 240.4
NP CB CR HR 63.4 60.3
NP CB CR HRA 183.4 180.6
CQ NP CB CR 28.3 42.3
CQ NP CB HP 146.7 161.8
NQ CQ NP NR 181.3 180.0
NP CQ NR CS 0.1 1.0
HNP NP CB CR 208.3 222.3
HNP NP CB HP 326.7 341.8
HNP NP CQ NR 180.3 167.1
NR CQ NP HNP 180.3 167.1
CQ NR CS OS 210.3 218.9
CQ NR CS HS 90.5 99.5
NQ CQ NP HNP 1.6 347.1
NP CQ NQ NR 178.7 180.0
NQ CQ NR CS 178.8 181.0
HNQ NQ CQ NR 360.0 180.1
HNQA NQ CQ NR 180.0 359.9
HR CR CB HP 303.9 300.7
CB CR HR HRA 119.9 120.4
CS CR HR HRA 240.1 239.3
HRA CR CB HP 63.9 61.1
CB CR HRA HR 240.1 239.6
CS CR HRA HR 119.9 120.5
NR CS CR HR 297.4 289.7
NR CS CR HRA 177.4 169.2
OS CS NR HS 119.8 119.4
NR CS OS HOS 180.0 300.0
CS CR CB HP 183.9 181.1
CB CR CS HR 120.0 119.7
CB CR CS HRA 240.0 240.2
CQ NR CS CR 330.6 339.3
HR CR CS HRA 120.0 120.5
OS CS CR HR 58.0 50.0
OS CS CR HRA 298.0 289.5
NR CS OS HS 240.4 240.6
HS CS CR HR 177.8 169.5
HS CS CR HRA 57.8 49.0
NR CS HS OS 120.1 119.4
HS CS OS HOS 299.5 59.4
HOS OS CS HS 299.5 59.4