PDB Chemical Component 5OD

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5OD

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C23	C12	1.555	1.531
C14	C13	1.551	1.530
C14	N9	1.479	1.469
C13	C12	1.568	1.531
N9	C10	1.456	1.470
N9	C4	1.366	1.389
C12	C11	1.582	1.530
C12	N22	1.479	1.468
C10	C11	1.561	1.530
C3	C4	1.408	1.392
C3	N2	1.344	1.320
C4	N5	1.367	1.328
N2	C1	1.361	1.328
N5	C6	1.356	1.327
C19	C18	1.409	1.380
C19	C8	1.417	1.395
C1	C6	1.418	1.402
C1	C8	1.485	1.481
C18	C17	1.411	1.383
C6	N7	1.353	1.388
C8	C15	1.398	1.395
C17	C16	1.411	1.384
C15	C16	1.400	1.383
C15	CL1	1.733	1.736
C16	CL2	1.745	1.736
C3	H1	1.080	1.080
C11	H2	1.100	1.090
C11	H3	1.100	1.090
C13	H4	1.100	1.090
C13	H5	1.100	1.091
C14	H6	1.100	1.090
C14	H7	1.100	1.090
C17	H8	1.080	1.081
C18	H9	1.080	1.079
C19	H10	1.080	1.080
C23	H11	1.100	1.089
C23	H12	1.100	1.090
C23	H13	1.100	1.090
N7	H14	1.000	0.969
N7	H15	1.000	0.970
C10	H16	1.100	1.090
C10	H17	1.100	1.090
N22	H18	1.000	1.009
N22	H19	1.000	1.010

Bond Angles for 5OD

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C23	C12	N22	106.0	109.5
C14	C13	H4	108.3	109.5
C14	C13	H5	108.3	109.5
C14	N9	C10	117.7	111.2
C14	N9	C4	120.6	111.0
N9	C14	H6	110.0	109.4
N9	C14	H7	110.0	109.4
C13	C12	N22	110.4	109.5
N9	C10	H16	110.0	109.5
N9	C10	H17	110.0	109.4
C12	C11	H2	108.7	109.6
C12	C11	H3	108.7	109.5
C12	N22	H18	109.5	111.1
C12	N22	H19	109.5	111.0
C10	C11	H2	108.7	109.5
C10	C11	H3	108.7	109.5
N2	C3	C4	120.8	120.2
C3	C4	N5	118.4	120.1
C4	C3	H1	119.6	119.9
N2	C3	H1	119.6	119.9
C4	N5	C6	121.5	119.9
N2	C1	C6	119.6	119.9
N2	C1	C8	114.8	120.1
C1	C6	N5	119.0	119.8
N5	C6	N7	117.4	120.1
C19	C18	H9	120.3	119.9
C1	C8	C19	118.8	120.1
C8	C19	H10	119.7	120.0
C6	C1	C8	125.4	120.1
C1	C6	N7	123.7	120.1
C1	C8	C15	121.8	120.1
C18	C17	H8	120.2	119.9
C6	N7	H14	109.5	120.0
C6	N7	H15	109.5	120.0
C8	C15	CL1	120.3	120.1
C17	C16	CL2	120.8	120.0
C16	C15	CL1	119.2	120.1
C15	C16	CL2	118.7	120.0
H2	C11	H3	109.5	109.5
H4	C13	H5	109.5	109.5
H6	C14	H7	109.4	109.5
H11	C23	H12	109.5	109.5
H11	C23	H13	109.5	109.5
H12	C23	H13	109.5	109.5
H14	N7	H15	109.5	120.0
H16	C10	H17	109.5	109.5
H18	N22	H19	109.4	111.0

Torsion Angles for 5OD

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C13	C12	C23	N22	119.4	120.2
C23	C12	C11	H2	47.0	302.3
C23	C12	C11	H3	166.1	62.4
C23	C12	N22	H18	180.0	59.9
C23	C12	N22	H19	300.0	183.8
C14	C13	C12	N22	191.5	297.7
H4	C13	C14	H5	241.4	120.0
N9	C14	C13	H4	171.6	180.9
N9	C14	C13	H5	290.3	60.8
C14	N9	C10	H16	182.3	178.2
C14	N9	C10	H17	303.0	58.3
H6	C14	N9	H7	120.6	120.0
C23	C12	C13	N22	243.3	239.8
C13	C12	C11	H2	169.3	62.2
C13	C12	C11	H3	288.5	182.4
C13	C12	N22	H18	60.7	299.7
C13	C12	N22	H19	180.7	63.7
C14	N9	C10	C4	178.2	124.1
C10	N9	C14	H6	179.4	301.7
C10	N9	C14	H7	58.8	181.7
N9	C10	C11	H2	185.6	299.2
N9	C10	C11	H3	66.5	179.2
H16	C10	N9	H17	239.3	119.9
C14	N9	C4	C10	181.9	235.8
C4	N9	C14	H6	357.6	65.8
C4	N9	C14	H7	237.0	305.8
N9	C4	C3	H1	359.0	359.7
C10	C11	C12	H2	239.6	240.1
C10	C11	C12	H3	120.5	119.9
H2	C11	C12	H3	240.9	239.9
N22	C12	C11	H2	290.7	182.2
N22	C12	C11	H3	49.8	302.3
H18	N22	C12	H19	240.0	236.0
C12	C11	C10	H2	120.4	120.0
C12	C11	C10	H3	239.5	240.0
H2	C11	C10	H3	119.1	120.0
C14	N9	C4	C3	4.9	180.0
N2	C3	C4	H1	180.0	180.2
C3	C4	N5	C6	3.6	359.5
N2	C3	C4	N5	355.0	0.3
C4	C3	N2	H1	180.0	179.8
C3	N2	C1	C6	357.3	360.0
C3	N2	C1	C8	181.6	179.7
C14	N9	C4	N5	189.0	359.7
N5	C4	C3	H1	175.0	180.0
C1	C6	N5	C4	358.2	0.5
C4	N5	C6	N7	178.0	180.5
N2	C1	C6	N5	1.3	359.8
N2	C1	C8	C19	64.7	128.7
C6	C1	N2	C8	175.6	180.2
N2	C1	C6	N7	181.5	179.8
N2	C1	C8	C15	244.4	308.2
N5	C6	C1	C8	176.4	180.0
C1	C6	N5	N7	180.2	180.0
N5	C6	N7	H14	360.0	171.9
N5	C6	N7	H15	120.0	352.0
C1	C8	C19	C18	179.3	180.0
C19	C18	C17	H8	175.8	180.0
C8	C19	C18	H9	183.3	179.8
C6	C1	C8	C19	249.4	308.4
C1	C8	C19	C15	179.7	179.6
C19	C8	C15	CL1	182.3	179.8
C4	N5	C6	C1	358.2	0.5
N2	C1	C6	C8	184.9	179.8
N5	C6	C1	N7	179.8	180.0
C6	C1	C8	C15	69.1	128.0
C1	C6	N7	H14	179.7	351.9
C1	C6	N7	H15	299.8	172.0
N2	C1	C8	C6	175.3	180.2
C8	C1	C6	N5	176.4	180.0
C1	C8	C19	H10	359.3	359.8
C8	C1	C6	N7	356.6	0.0
C1	C8	C15	CL1	2.6	0.3
C18	C17	C16	CL2	180.2	180.0
C1	C6	N7	N5	179.8	180.0
N7	C6	C1	C8	356.6	0.0
H14	N7	C6	H15	240.0	179.9
C1	C8	C15	C19	180.3	180.4
C16	C15	C8	CL1	176.0	179.7
C8	C15	C16	CL2	182.8	180.2
C17	C16	C15	CL1	176.8	180.0
C15	C16	C17	CL2	182.0	180.0
C1	C8	C15	C16	178.6	180.0
C8	C15	C16	CL1	184.0	180.3
C17	C16	C15	CL2	178.0	180.0
CL1	C15	C16	CL2	358.8	360.0
CL2	C16	C15	CL1	358.8	360.0
N2	C3	H1	C4	180.0	179.8
H1	C3	C4	N5	175.0	180.0
C12	C11	H2	H3	118.6	120.1
C10	C11	H2	H3	241.4	240.0
C12	C11	H3	H2	241.4	239.8
C10	C11	H3	H2	118.6	120.0
C14	C13	H4	H5	117.9	239.9
H4	C13	C12	N22	70.8	57.7
C14	C13	H5	H4	242.1	120.0
H5	C13	C12	N22	312.1	177.8
H6	C14	C13	H4	291.3	300.8
H6	C14	C13	H5	50.0	180.8
H6	C14	N9	C10	179.4	301.7
H6	C14	N9	C4	357.6	65.8
N9	C14	H6	H7	239.1	240.1
H7	C14	C13	H4	51.9	60.9
H7	C14	C13	H5	170.5	300.9
H7	C14	N9	C10	58.8	181.7
H7	C14	N9	C4	237.0	305.8
N9	C14	H7	H6	120.9	120.0
H8	C17	C16	CL2	0.2	360.0
H9	C18	C17	H8	355.8	0.0
H10	C19	C18	H9	3.4	360.0
H11	C23	C12	N22	60.6	180.1
H12	C23	H11	H13	120.0	120.1
H12	C23	C12	N22	180.6	300.2
H11	C23	H12	H13	240.0	239.9
H13	C23	C12	N22	300.6	60.1
H11	C23	H13	H12	120.0	120.1
C6	N7	H14	H15	120.0	180.1
C6	N7	H15	H14	240.0	179.9
N9	C10	H16	H17	120.9	240.1
H16	C10	C11	H2	66.0	59.2
H16	C10	C11	H3	306.9	299.2
N9	C10	H17	H16	239.1	119.9
H17	C10	C11	H2	305.3	179.3
H17	C10	C11	H3	186.2	59.3
C12	N22	H18	H19	120.0	124.0
C12	N22	H19	H18	240.0	236.0