PDB Chemical Component 5OC

Ideal Model

Chemical Description

Name 2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate)
Formula C9 H14 N3 O8 P
Formal charge 0
Molecular weight 323.197 g/mol
Component type DNA LINKING

Chemical features

Atom count 35
Chiral atom count 3
Chiral atoms C1' C3' C4'
Observed leaving atoms OP2 HOP2
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-hydroxycytidine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-azanyl-5-oxidanyl-2-oxidanylidene-pyrimidin-1-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1O)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=C1O)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=NC2=O)N)O)COP(=O)(O)O)O
InChI descriptor InChI=1S/C9H14N3O8P/c10-8-5(14)2-12(9(15)11-8)7-1-4(13)6(20-7)3-19-21(16,17)18/h2,4,6-7,13-14H,1,3H2,(H2,10,11,15)(H2,16,17,18)/t4-,6+,7+/m0/s1
InChIKey descriptor IHMAXICTBCXOER-UBKIQSJTSA-N

Status Information

Last modified 2011-11-04
Created 2011-08-15
Release status REL
Model PDB code 3TAB
Processing site RCSB