PDB Chemical Component 5OB
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5OB
Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
N3 |
C2 |
1.345 |
1.361 |
N3 |
C3A |
1.390 |
1.381 |
N3 |
H31N |
1.020 |
0.970 |
N1 |
C2 |
1.354 |
1.301 |
N1 |
C7A |
1.408 |
1.358 |
C2 |
H21 |
1.103 |
1.079 |
C7A |
C3A |
1.378 |
1.404 |
C7A |
C7 |
1.390 |
1.397 |
C3A |
C4 |
1.394 |
1.388 |
C4 |
C5 |
1.388 |
1.383 |
C4 |
H41 |
1.103 |
1.079 |
C5 |
C6 |
1.405 |
1.392 |
C5 |
O10 |
1.345 |
1.360 |
C6 |
C7 |
1.386 |
1.365 |
C6 |
H61 |
1.102 |
1.079 |
C7 |
H71 |
1.103 |
1.080 |
O10 |
C11 |
1.407 |
1.428 |
C11 |
H111 |
1.114 |
1.090 |
C11 |
H112 |
1.116 |
1.089 |
C11 |
H113 |
1.116 |
1.090 |
Bond Angles for 5OB
Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
C2 |
N3 |
C3A |
106.6 |
107.3 |
C2 |
N3 |
H31N |
125.4 |
126.4 |
N3 |
C2 |
N1 |
113.1 |
110.1 |
N3 |
C2 |
H21 |
123.2 |
125.0 |
C3A |
N3 |
H31N |
128.0 |
126.3 |
N3 |
C3A |
C7A |
106.8 |
106.0 |
N3 |
C3A |
C4 |
132.8 |
134.1 |
C2 |
N1 |
C7A |
103.9 |
109.7 |
N1 |
C2 |
H21 |
123.7 |
125.0 |
N1 |
C7A |
C3A |
109.6 |
106.9 |
N1 |
C7A |
C7 |
130.4 |
133.5 |
C3A |
C7A |
C7 |
120.1 |
119.6 |
C7A |
C3A |
C4 |
120.4 |
119.9 |
C7A |
C7 |
C6 |
120.5 |
119.9 |
C7A |
C7 |
H71 |
119.9 |
120.0 |
C3A |
C4 |
C5 |
119.6 |
119.6 |
C3A |
C4 |
H41 |
120.3 |
120.2 |
C5 |
C4 |
H41 |
120.0 |
120.2 |
C4 |
C5 |
C6 |
120.2 |
120.4 |
C4 |
C5 |
O10 |
112.9 |
119.8 |
C6 |
C5 |
O10 |
126.8 |
119.8 |
C5 |
C6 |
C7 |
119.2 |
120.6 |
C5 |
C6 |
H61 |
121.1 |
119.7 |
C5 |
O10 |
C11 |
109.3 |
106.9 |
C7 |
C6 |
H61 |
119.7 |
119.7 |
C6 |
C7 |
H71 |
119.6 |
120.0 |
O10 |
C11 |
H111 |
109.3 |
109.5 |
O10 |
C11 |
H112 |
112.3 |
109.5 |
O10 |
C11 |
H113 |
112.3 |
109.4 |
H111 |
C11 |
H112 |
112.3 |
109.4 |
H111 |
C11 |
H113 |
112.3 |
109.5 |
H112 |
C11 |
H113 |
98.1 |
109.5 |
Torsion Angles for 5OB
Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
C3A |
N3 |
C2 |
H31N |
180.0 |
180.0 |
C2 |
N3 |
C3A |
C7A |
359.5 |
0.0 |
C2 |
N3 |
C3A |
C4 |
180.4 |
180.3 |
N3 |
C2 |
N1 |
C7A |
1.0 |
0.0 |
N1 |
C2 |
N3 |
H21 |
180.0 |
179.9 |
C2 |
N3 |
C3A |
H31N |
180.0 |
180.0 |
C3A |
N3 |
C2 |
N1 |
359.6 |
360.0 |
C3A |
N3 |
C2 |
H21 |
179.6 |
180.1 |
N1 |
C7A |
C3A |
N3 |
1.1 |
0.0 |
N3 |
C3A |
C7A |
C7 |
180.9 |
180.0 |
C7A |
C3A |
N3 |
C4 |
179.1 |
179.7 |
N3 |
C3A |
C4 |
C5 |
179.6 |
180.1 |
N3 |
C3A |
C4 |
H41 |
359.6 |
0.0 |
C2 |
N3 |
H31N |
C3A |
180.0 |
179.9 |
H31N |
N3 |
C2 |
N1 |
179.6 |
180.0 |
H31N |
N3 |
C2 |
H21 |
359.6 |
0.1 |
H31N |
N3 |
C3A |
C7A |
179.6 |
180.0 |
H31N |
N3 |
C3A |
C4 |
0.5 |
0.3 |
N1 |
C2 |
N3 |
C3A |
359.6 |
360.0 |
N1 |
C2 |
N3 |
H31N |
179.6 |
180.0 |
N3 |
C2 |
N1 |
H21 |
180.0 |
180.1 |
C2 |
N1 |
C7A |
C3A |
358.7 |
360.0 |
C2 |
N1 |
C7A |
C7 |
178.9 |
180.0 |
N3 |
C3A |
C7A |
N1 |
1.1 |
0.0 |
C7A |
N1 |
C2 |
H21 |
181.0 |
179.9 |
C3A |
C7A |
N1 |
C7 |
179.8 |
180.0 |
N1 |
C7A |
C3A |
C4 |
180.3 |
179.8 |
N1 |
C7A |
C7 |
C6 |
178.4 |
180.0 |
N1 |
C7A |
C7 |
H71 |
358.4 |
359.9 |
H21 |
C2 |
N3 |
C3A |
179.6 |
180.1 |
H21 |
C2 |
N3 |
H31N |
359.6 |
0.1 |
N3 |
C2 |
H21 |
N1 |
180.0 |
179.9 |
H21 |
C2 |
N1 |
C7A |
181.0 |
179.9 |
C7A |
C3A |
N3 |
H31N |
179.6 |
180.0 |
N3 |
C3A |
C7A |
C4 |
180.8 |
180.3 |
N1 |
C7A |
C3A |
C7 |
180.2 |
180.0 |
C3A |
C7A |
C7 |
C6 |
358.6 |
0.0 |
C3A |
C7A |
C7 |
H71 |
178.6 |
180.0 |
C7A |
C3A |
C4 |
C5 |
0.6 |
0.5 |
C7A |
C3A |
C4 |
H41 |
180.6 |
180.4 |
N1 |
C7A |
C7 |
C3A |
179.8 |
180.0 |
C7 |
C7A |
C3A |
C4 |
0.2 |
359.7 |
C5 |
C6 |
C7 |
C7A |
1.8 |
-0.0 |
C7A |
C7 |
C6 |
H61 |
181.8 |
180.0 |
C6 |
C7 |
C7A |
H71 |
180.0 |
180.1 |
C4 |
C3A |
N3 |
H31N |
0.5 |
0.3 |
N3 |
C3A |
C4 |
C7A |
179.0 |
179.6 |
C4 |
C3A |
C7A |
C7 |
0.2 |
359.7 |
C5 |
C4 |
C3A |
H41 |
180.0 |
180.1 |
C3A |
C4 |
C5 |
C6 |
359.8 |
359.6 |
C3A |
C4 |
C5 |
O10 |
179.4 |
179.7 |
C3A |
C4 |
C5 |
H41 |
180.0 |
179.9 |
C6 |
C5 |
C4 |
O10 |
180.4 |
179.9 |
C4 |
C5 |
C6 |
C7 |
359.0 |
0.2 |
C4 |
C5 |
C6 |
H61 |
179.0 |
180.2 |
C4 |
C5 |
O10 |
C11 |
4.9 |
179.8 |
C3A |
C4 |
H41 |
C5 |
180.0 |
180.1 |
H41 |
C4 |
C5 |
C6 |
179.8 |
179.6 |
H41 |
C4 |
C5 |
O10 |
359.4 |
359.8 |
C7A |
C7 |
C6 |
C5 |
1.8 |
-0.0 |
C6 |
C5 |
C4 |
H41 |
179.8 |
179.6 |
C4 |
C5 |
C6 |
O10 |
179.6 |
180.1 |
C6 |
C5 |
O10 |
C11 |
184.5 |
359.9 |
C7 |
C6 |
C5 |
H61 |
180.0 |
180.0 |
C5 |
C6 |
C7 |
H71 |
181.8 |
180.1 |
O10 |
C5 |
C4 |
H41 |
359.4 |
359.8 |
C4 |
C5 |
O10 |
C6 |
180.4 |
179.9 |
O10 |
C5 |
C6 |
C7 |
179.4 |
180.0 |
O10 |
C5 |
C6 |
H61 |
359.4 |
0.0 |
C5 |
O10 |
C11 |
H111 |
180.0 |
180.0 |
C5 |
O10 |
C11 |
H112 |
305.3 |
300.0 |
C5 |
O10 |
C11 |
H113 |
54.7 |
60.0 |
C7A |
C7 |
C6 |
H71 |
180.0 |
179.9 |
C7 |
C6 |
C5 |
O10 |
179.4 |
180.0 |
C5 |
C6 |
C7 |
H61 |
180.0 |
180.0 |
H61 |
C6 |
C5 |
O10 |
359.4 |
0.0 |
C5 |
C6 |
H61 |
C7 |
180.0 |
180.0 |
H61 |
C6 |
C7 |
H71 |
1.8 |
0.1 |
C7A |
C7 |
H71 |
C6 |
180.0 |
180.1 |
H71 |
C7 |
C6 |
H61 |
1.8 |
0.1 |
H111 |
C11 |
O10 |
H112 |
234.7 |
240.0 |
H111 |
C11 |
O10 |
H113 |
125.3 |
120.0 |
H112 |
C11 |
O10 |
H113 |
250.6 |
240.0 |
O10 |
C11 |
H111 |
H112 |
125.2 |
120.0 |
O10 |
C11 |
H111 |
H113 |
234.7 |
240.0 |
H112 |
C11 |
H111 |
H113 |
109.5 |
120.0 |
O10 |
C11 |
H112 |
H111 |
236.4 |
240.0 |
O10 |
C11 |
H112 |
H113 |
118.2 |
119.9 |
H111 |
C11 |
H112 |
H113 |
241.7 |
240.0 |
O10 |
C11 |
H113 |
H111 |
123.6 |
120.1 |
O10 |
C11 |
H113 |
H112 |
241.9 |
240.0 |
H111 |
C11 |
H113 |
H112 |
118.2 |
120.0 |