PDB Chemical Component 5NC

Ideal Model

Chemical Description

Name 5-AZA-CYTIDINE-5'MONOPHOSPHATE
Formula C8 H13 N4 O7 P
Formal charge 0
Molecular weight 308.185 g/mol
Component type DNA LINKING
Nonstandard Parent Id DC

Chemical features

Atom count 33
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3
Bond count 34
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4-amino-1-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-1,3,5-triazin-2(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-5-(4-amino-2-oxo-1,3,5-triazin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=N1)[C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2
SMILES (CACTVS) NC1=NC(=O)N(C=N1)[CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=NC(=NC2=O)N)COP(=O)(O)O)O
InChI descriptor InChI=1S/C8H13N4O7P/c9-7-10-3-12(8(14)11-7)6-1-4(13)5(19-6)2-18-20(15,16)17/h3-6,13H,1-2H2,(H2,9,11,14)(H2,15,16,17)/t4-,5+,6+/m0/s1
InChIKey descriptor JQHZISUSXMJEPR-KVQBGUIXSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Model PDB code 10MH
Processing site RCSB