PDB Chemical Component 5MU

Ideal Model

Chemical Description

Name 5-METHYLURIDINE 5'-MONOPHOSPHATE
Formula C10 H15 N2 O9 P
Formal charge 0
Molecular weight 338.208 g/mol
Component type RNA LINKING
Nonstandard Parent Id U

Chemical features

Atom count 37
Chiral atom count 4
Chiral atoms C1' C2' C3' C4'
Observed leaving atoms OP3 HO3'
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 5-methyluridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,4R,5R)-3,4-dihydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O)C(=O)NC1=O
SMILES (CACTVS) CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O)C(=O)NC1=O
Stereo SMILES (OpenEye) CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O
InChI descriptor InChI=1S/C10H15N2O9P/c1-4-2-12(10(16)11-8(4)15)9-7(14)6(13)5(21-9)3-20-22(17,18)19/h2,5-7,9,13-14H,3H2,1H3,(H,11,15,16)(H2,17,18,19)/t5-,6-,7-,9-/m1/s1
InChIKey descriptor IGWHDMPTQKSDTL-JXOAFFINSA-N

Status Information

Last modified 2011-06-04
Created 1999-07-08
Release status REL
Replaces RT
Model PDB code 1EVV
Processing site RCSB