PDB Chemical Component 5MS

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5MS

Atom I	Atom J	Distance (Experimental Model)	Distance (Ideal Model)
C	C1	1.392	1.381
C	C5	1.406	1.390
C	C18	1.510	1.507
C1	C2	1.393	1.381
C2	C3	1.394	1.390
C3	C4	1.402	1.388
C3	N	1.342	1.398
C4	C5	1.399	1.387
C5	N19	1.357	1.397
N	C6	1.344	1.386
C6	C7	1.403	1.394
C6	N11	1.361	1.332
C7	C8	1.399	1.392
C8	N9	1.363	1.333
C8	C12	1.511	1.484
N9	C10	1.357	1.316
C10	N11	1.351	1.317
C12	C13	1.409	1.393
C12	C17	1.407	1.393
C13	C14	1.402	1.380
C14	C15	1.398	1.384
C15	C16	1.401	1.383
C16	C17	1.400	1.381
N19	S	1.713	1.655
S	C20	1.707	1.814
S	O	1.692	1.421
S	O21	1.698	1.421
C1	H1	1.080	1.080
C2	H2	1.080	1.080
C4	H4	1.080	1.080
N	HN	1.000	0.971
C7	H7	1.080	1.080
C10	H10	1.080	1.080
C13	H13	1.080	1.080
C14	H14	1.080	1.080
C15	H15	1.080	1.080
C16	H16	1.080	1.080
C17	H17	1.079	1.080
C18	H18	1.100	1.090
C18	H18A	1.100	1.090
C18	H18B	1.100	1.090
N19	HN19	1.000	0.970
C20	H20	1.099	1.090
C20	H20A	1.100	1.090
C20	H20B	1.100	1.090

Bond Angles for 5MS

Atom I	Atom J	Atom K	Angle (Experimental Model)	Angle (Ideal Model)
C1	C	C5	119.0	120.0
C1	C	C18	117.6	120.0
C	C1	C2	120.9	120.2
C	C1	H1	119.5	119.9
C5	C	C18	123.3	120.0
C	C5	C4	119.5	119.9
C	C5	N19	118.6	120.0
C	C18	H18	109.5	109.5
C	C18	H18A	109.5	109.5
C	C18	H18B	109.5	109.5
C1	C2	C3	121.0	120.0
C2	C1	H1	119.6	119.9
C1	C2	H2	119.5	120.0
C2	C3	C4	118.0	119.9
C2	C3	N	122.9	120.0
C3	C2	H2	119.5	119.9
C4	C3	N	119.1	120.1
C3	C4	C5	121.6	119.8
C3	C4	H4	119.2	120.1
C3	N	C6	130.3	120.0
C3	N	HN	114.9	119.9
C4	C5	N19	121.9	120.0
C5	C4	H4	119.2	120.1
C5	N19	S	128.1	120.0
C5	N19	HN19	103.7	120.0
N	C6	C7	117.9	120.5
N	C6	N11	121.3	120.5
C6	N	HN	114.9	120.0
C7	C6	N11	120.8	119.0
C6	C7	C8	119.1	118.2
C6	C7	H7	120.4	120.9
C6	N11	C10	116.9	120.9
C7	C8	N9	119.8	119.0
C7	C8	C12	124.1	120.5
C8	C7	H7	120.4	120.9
N9	C8	C12	116.1	120.5
C8	N9	C10	117.8	120.8
C8	C12	C13	120.7	120.1
C8	C12	C17	122.5	120.1
N9	C10	N11	125.6	122.0
N9	C10	H10	117.2	119.0
N11	C10	H10	117.2	119.0
C13	C12	C17	116.8	119.8
C12	C13	C14	122.2	119.9
C12	C13	H13	118.9	120.1
C12	C17	C16	121.8	119.9
C12	C17	H17	119.1	120.1
C13	C14	C15	119.7	120.1
C14	C13	H13	118.9	120.0
C13	C14	H14	120.1	120.0
C14	C15	C16	119.3	120.3
C15	C14	H14	120.1	119.9
C14	C15	H15	120.3	119.9
C15	C16	C17	120.2	120.1
C16	C15	H15	120.3	119.9
C15	C16	H16	119.9	120.0
C17	C16	H16	119.9	119.9
C16	C17	H17	119.1	120.0
N19	S	C20	104.1	104.5
N19	S	O	106.1	104.3
N19	S	O21	111.6	104.3
S	N19	HN19	103.7	120.0
C20	S	O	104.8	110.5
C20	S	O21	108.7	110.6
S	C20	H20	109.5	109.5
S	C20	H20A	109.4	109.5
S	C20	H20B	109.5	109.4
O	S	O21	120.3	121.0
H18	C18	H18A	109.5	109.4
H18	C18	H18B	109.5	109.5
H18A	C18	H18B	109.5	109.5
H20	C20	H20A	109.5	109.5
H20	C20	H20B	109.5	109.4
H20A	C20	H20B	109.5	109.5

Torsion Angles for 5MS

Atom I	Atom J	Atom K	Atom L	Angle (Experimental Model)	Angle (Ideal Model)
C5	C	C1	C18	180.6	180.3
C1	C	C5	C4	359.7	360.0
C1	C	C5	N19	179.6	180.0
C1	C	C18	H18	351.9	90.0
C1	C	C18	H18A	111.9	210.0
C1	C	C18	H18B	231.9	330.0
C	C1	C2	C3	0.0	360.0
C2	C1	C	H1	180.0	180.0
C	C1	C2	H2	180.0	180.0
C1	C	C5	C18	179.4	179.7
C5	C	C1	C2	0.3	0.0
C5	C	C1	H1	180.3	180.0
C5	C	C18	H18	171.2	269.8
C5	C	C18	H18A	291.2	29.7
C5	C	C18	H18B	51.2	149.7
C3	C4	C5	C	0.0	360.0
C4	C5	C	N19	180.1	180.0
C	C5	C4	H4	180.0	180.1
C	C5	N19	S	182.8	215.5
C	C5	N19	HN19	302.8	35.5
C1	C	C18	C5	180.6	180.3
C18	C	C1	C2	179.7	179.8
C18	C	C1	H1	359.7	359.7
C18	C	C5	C4	180.3	180.3
C18	C	C5	N19	0.2	0.3
H18	C18	C	H18A	240.0	240.0
H18	C18	C	H18B	120.0	120.1
H18A	C18	C	H18B	240.0	240.0
C2	C1	C	C5	0.3	0.0
C2	C1	C	C18	179.7	179.8
C	C1	C2	H1	180.0	180.0
C1	C2	C3	C4	359.7	360.0
C1	C2	C3	N	180.2	180.0
C3	C2	C1	H2	180.0	180.0
C3	C2	C1	H1	180.0	180.0
C1	C2	C3	H2	180.0	180.0
C4	C3	C2	N	179.5	180.0
C2	C3	C4	C5	0.3	0.1
C2	C3	C4	H4	180.3	179.9
C2	C3	N	C6	110.5	324.2
C2	C3	N	HN	290.5	144.3
C	C5	C4	C3	0.0	360.0
C2	C3	C4	N	180.5	180.0
C4	C3	C2	H2	179.7	180.0
C4	C3	N	C6	291.0	144.2
C4	C3	N	HN	111.0	324.3
C3	C4	C5	N19	180.1	180.0
C5	C4	C3	H4	180.0	180.1
C2	C3	N	C4	179.5	180.0
N	C3	C2	H2	0.2	360.0
N	C3	C4	C5	179.8	180.1
N	C3	C4	H4	359.8	360.0
C3	N	C6	C7	190.5	174.1
C3	N	C6	N11	10.8	353.9
C6	N	C3	HN	180.0	179.9
C4	C5	C	C18	180.3	180.3
C	C5	C4	N19	179.9	180.0
C5	C4	C3	N	179.8	180.1
C3	C4	C5	H4	180.0	179.9
C4	C5	N19	S	2.7	35.5
C4	C5	N19	HN19	122.6	215.5
N19	C5	C	C18	0.2	0.3
C	C5	N19	C4	180.1	180.0
N19	C5	C4	H4	0.1	0.1
C5	N19	S	C20	69.7	58.9
C5	N19	S	O	180.0	175.0
C5	N19	S	O21	312.7	302.8
S	N19	C5	HN19	240.0	180.0
C3	N	C6	HN	180.0	180.1
C7	C6	N	N11	179.7	180.2
N	C6	C7	C8	180.1	180.0
N	C6	C7	H7	0.1	359.9
N	C6	N11	C10	179.8	179.8
N	C6	C7	N11	180.2	179.8
C7	C6	N	HN	10.5	354.1
C7	C6	N11	C10	0.0	359.5
C6	C7	C8	N9	359.8	0.0
C6	C7	C8	C12	180.4	180.0
C8	C7	C6	H7	180.0	180.1
N	C6	N11	C7	179.7	180.2
N11	C6	N	HN	190.8	173.9
N11	C6	C7	C8	359.9	0.2
N11	C6	C7	H7	179.8	180.2
N9	C10	N11	C6	0.4	0.5
C6	N11	C10	H10	180.4	180.2
C8	C7	C6	N11	359.9	0.2
C6	C7	C8	H7	180.0	179.9
N9	C8	C7	C12	179.4	180.1
C7	C8	N9	C10	0.6	360.0
C7	C8	C12	C13	154.9	180.0
C7	C8	C12	C17	335.4	359.8
C7	C8	N9	C12	180.6	179.9
N9	C8	C7	H7	179.8	180.1
N9	C8	C12	C13	335.5	360.0
N9	C8	C12	C17	156.0	179.7
C8	N9	C10	N11	359.3	359.8
C8	N9	C10	H10	179.3	180.0
C7	C8	C12	N9	179.4	180.1
C12	C8	C7	H7	0.5	0.0
C12	C8	N9	C10	180.0	180.0
C13	C12	C8	C17	179.5	180.3
C8	C12	C13	C14	180.0	180.0
C8	C12	C13	H13	0.0	360.0
C8	C12	C17	C16	179.8	179.7
C8	C12	C17	H17	359.8	360.0
C6	N11	C10	N9	0.4	0.5
C10	N9	C8	C12	180.0	180.0
N11	C10	N9	H10	180.0	179.8
N9	C10	N11	H10	180.0	180.2
C8	C12	C13	C17	180.5	179.7
C13	C12	C17	C16	0.3	359.5
C13	C12	C17	H17	180.3	179.7
C12	C13	C14	C15	0.4	0.0
C14	C13	C12	H13	180.0	180.0
C12	C13	C14	H14	180.4	180.0
C8	C12	C17	C13	179.5	180.3
C17	C12	C13	C14	359.5	0.3
C17	C12	C13	H13	179.5	180.2
C15	C16	C17	C12	359.9	0.5
C12	C17	C16	H16	180.0	180.3
C16	C17	C12	H17	180.0	179.8
C14	C13	C12	C17	359.5	0.3
C12	C13	C14	H13	180.0	180.0
C13	C14	C15	C16	359.8	360.0
C15	C14	C13	H14	180.0	180.0
C13	C14	C15	H15	179.9	180.0
C15	C14	C13	H13	180.4	180.0
C13	C14	C15	H14	180.0	180.0
C14	C15	C16	C17	0.0	359.7
C16	C15	C14	H15	180.0	180.0
C14	C15	C16	H16	180.0	179.9
C12	C17	C16	C15	359.9	0.5
C16	C15	C14	H14	179.8	180.0
C14	C15	C16	H15	180.0	180.0
C17	C16	C15	H16	180.0	179.8
C15	C16	C17	H17	180.0	180.3
C12	C17	C16	H17	180.0	180.2
C17	C16	C15	H15	180.0	179.7
C15	C16	C17	H16	180.0	180.2
C5	N19	S	HN19	120.0	180.0
C20	S	N19	O	249.8	243.9
C20	S	N19	O21	117.0	116.1
N19	S	C20	H20	106.7	59.9
N19	S	C20	H20A	226.7	180.0
N19	S	C20	H20B	346.7	300.0
O	S	N19	O21	227.3	232.2
N19	S	C20	O	111.2	111.6
N19	S	C20	O21	240.9	248.3
C20	S	N19	HN19	309.7	238.9
O	S	C20	O21	129.7	136.7
H20	C20	S	H20A	240.0	240.0
H20	C20	S	H20B	120.0	119.9
H20A	C20	S	H20B	240.0	240.0
N19	S	O	C20	250.3	248.2
N19	S	O	O21	127.8	116.7
O	S	N19	HN19	60.0	354.9
C20	S	O	O21	237.5	228.5
O	S	C20	H20	355.5	308.3
O	S	C20	H20A	115.5	68.4
O	S	C20	H20B	235.5	188.4
N19	S	O21	C20	114.2	111.8
N19	S	O21	O	234.8	243.3
O21	S	N19	HN19	192.7	122.7
C20	S	O21	O	120.6	131.5
O21	S	C20	H20	225.7	171.6
O21	S	C20	H20A	345.7	291.7
O21	S	C20	H20B	105.7	51.7
H1	C1	C	C5	180.3	180.0
H1	C1	C	C18	359.7	359.7
C	C1	H1	C2	180.0	180.0
H1	C1	C2	C3	180.0	180.0
H1	C1	C2	H2	360.0	0.0
C1	C2	H2	C3	180.0	180.0
H2	C2	C1	H1	360.0	0.0
H2	C2	C3	C4	179.7	180.0
H2	C2	C3	N	0.2	360.0
H4	C4	C3	N	359.8	360.0
C3	C4	H4	C5	180.0	180.1
H4	C4	C5	N19	0.1	0.1
C3	N	HN	C6	180.0	179.9
HN	N	C6	C7	10.5	354.1
HN	N	C6	N11	190.8	173.9
H7	C7	C6	N11	179.8	180.2
C6	C7	H7	C8	180.0	180.1
H7	C7	C8	N9	179.8	180.1
H7	C7	C8	C12	0.5	0.0
N9	C10	H10	N11	180.0	179.8
H13	C13	C12	C17	179.5	180.2
C12	C13	H13	C14	180.0	180.0
H13	C13	C14	C15	180.4	180.0
H13	C13	C14	H14	0.4	0.1
C13	C14	H14	C15	180.0	180.0
H14	C14	C13	H13	0.4	0.1
H14	C14	C15	C16	179.8	180.0
H14	C14	C15	H15	359.8	0.0
C14	C15	H15	C16	180.0	180.0
H15	C15	C14	H14	359.8	0.0
H15	C15	C16	C17	180.0	179.7
H15	C15	C16	H16	359.9	359.9
C15	C16	H16	C17	180.0	179.8
H16	C16	C15	H15	359.9	359.9
H16	C16	C17	H17	360.0	0.1
C12	C17	H17	C16	180.0	179.8
H17	C17	C16	H16	360.0	0.1
C	C18	H18	H18A	120.0	120.0
C	C18	H18	H18B	240.0	240.0
H18A	C18	H18	H18B	120.0	120.0
C	C18	H18A	H18	240.0	240.0
C	C18	H18A	H18B	120.0	120.0
H18	C18	H18A	H18B	240.0	240.0
C	C18	H18B	H18	120.0	120.1
C	C18	H18B	H18A	240.0	240.0
H18	C18	H18B	H18A	120.0	119.9
C5	N19	HN19	S	224.6	180.0
HN19	N19	S	C20	309.7	238.9
HN19	N19	S	O	60.0	354.9
HN19	N19	S	O21	192.7	122.7
H20	C20	S	O	355.5	308.3
H20	C20	S	O21	225.7	171.6
S	C20	H20	H20A	120.0	120.1
S	C20	H20	H20B	240.0	240.0
H20A	C20	H20	H20B	120.0	120.0
H20A	C20	S	O	115.5	68.4
H20A	C20	S	O21	345.7	291.7
S	C20	H20A	H20	240.0	240.0
S	C20	H20A	H20B	120.0	120.0
H20	C20	H20A	H20B	240.0	240.1
H20B	C20	S	O	235.5	188.4
H20B	C20	S	O21	105.7	51.7
S	C20	H20B	H20	120.0	120.0
S	C20	H20B	H20A	240.0	239.9
H20	C20	H20B	H20A	120.0	120.0