PDB Chemical Component 5MI
The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.
Bond Distances for 5MI
| Atom I |
Atom J |
Distance (Experimental Model) |
Distance (Ideal Model) |
| C5 |
C6 |
1.390 |
1.389 |
| C5 |
C4 |
1.389 |
1.366 |
| C5 |
CAJ |
1.526 |
1.508 |
| C6 |
C7 |
1.386 |
1.378 |
| C7 |
C8 |
1.389 |
1.391 |
| C8 |
N1 |
1.331 |
1.377 |
| C8 |
C9 |
1.386 |
1.407 |
| N1 |
C2 |
1.332 |
1.368 |
| C4 |
C9 |
1.389 |
1.396 |
| C9 |
C3 |
1.328 |
1.465 |
| C3 |
C2 |
1.332 |
1.343 |
| C6 |
H6 |
1.080 |
1.080 |
| C4 |
H4 |
1.080 |
1.080 |
| CAJ |
HAJ1 |
1.100 |
1.090 |
| CAJ |
HAJ2 |
1.100 |
1.090 |
| CAJ |
HAJ3 |
1.100 |
1.090 |
| C7 |
H7 |
1.080 |
1.079 |
| N1 |
H1 |
1.000 |
0.970 |
| C2 |
H2 |
1.080 |
1.080 |
| C3 |
H3 |
1.080 |
1.079 |
Bond Angles for 5MI
| Atom I |
Atom J |
Atom K |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C6 |
C5 |
C4 |
120.2 |
120.5 |
| C6 |
C5 |
CAJ |
119.6 |
119.7 |
| C5 |
C6 |
C7 |
120.0 |
120.6 |
| C5 |
C6 |
H6 |
120.0 |
119.7 |
| C4 |
C5 |
CAJ |
120.2 |
119.8 |
| C5 |
C4 |
C9 |
119.7 |
119.8 |
| C5 |
C4 |
H4 |
120.2 |
120.1 |
| C5 |
CAJ |
HAJ1 |
109.5 |
109.5 |
| C5 |
CAJ |
HAJ2 |
109.5 |
109.5 |
| C5 |
CAJ |
HAJ3 |
109.5 |
109.5 |
| C6 |
C7 |
C8 |
119.9 |
119.8 |
| C7 |
C6 |
H6 |
120.0 |
119.7 |
| C6 |
C7 |
H7 |
120.1 |
120.1 |
| C7 |
C8 |
N1 |
132.6 |
133.5 |
| C7 |
C8 |
C9 |
120.2 |
119.4 |
| C8 |
C7 |
H7 |
120.0 |
120.1 |
| N1 |
C8 |
C9 |
107.2 |
107.1 |
| C8 |
N1 |
C2 |
108.4 |
109.8 |
| C8 |
N1 |
H1 |
125.8 |
125.1 |
| C8 |
C9 |
C4 |
120.1 |
119.9 |
| C8 |
C9 |
C3 |
106.8 |
106.1 |
| N1 |
C2 |
C3 |
108.7 |
110.0 |
| C2 |
N1 |
H1 |
125.8 |
125.1 |
| N1 |
C2 |
H2 |
125.6 |
125.0 |
| C4 |
C9 |
C3 |
133.1 |
134.0 |
| C9 |
C4 |
H4 |
120.1 |
120.1 |
| C9 |
C3 |
C2 |
108.8 |
106.9 |
| C9 |
C3 |
H3 |
125.6 |
126.5 |
| C3 |
C2 |
H2 |
125.6 |
125.0 |
| C2 |
C3 |
H3 |
125.6 |
126.5 |
| HAJ1 |
CAJ |
HAJ2 |
109.5 |
109.5 |
| HAJ1 |
CAJ |
HAJ3 |
109.5 |
109.5 |
| HAJ2 |
CAJ |
HAJ3 |
109.5 |
109.4 |
Torsion Angles for 5MI
| Atom I |
Atom J |
Atom K |
Atom L |
Angle (Experimental Model) |
Angle (Ideal Model) |
| C4 |
C5 |
C6 |
CAJ |
179.7 |
180.3 |
| C6 |
C5 |
C4 |
C9 |
0.6 |
360.0 |
| C6 |
C5 |
C4 |
H4 |
180.6 |
180.0 |
| C6 |
C5 |
CAJ |
HAJ1 |
89.8 |
90.0 |
| C6 |
C5 |
CAJ |
HAJ2 |
209.9 |
210.0 |
| C6 |
C5 |
CAJ |
HAJ3 |
329.8 |
330.0 |
| C5 |
C6 |
C7 |
C8 |
0.1 |
0.0 |
| C7 |
C6 |
C5 |
H6 |
180.0 |
180.1 |
| C5 |
C6 |
C7 |
H7 |
180.1 |
180.0 |
| C6 |
C5 |
C4 |
CAJ |
180.3 |
179.7 |
| C4 |
C5 |
C6 |
C7 |
359.5 |
0.0 |
| C4 |
C5 |
C6 |
H6 |
179.5 |
179.9 |
| C4 |
C5 |
CAJ |
HAJ1 |
270.1 |
269.7 |
| C4 |
C5 |
CAJ |
HAJ2 |
30.2 |
29.8 |
| C4 |
C5 |
CAJ |
HAJ3 |
150.1 |
149.7 |
| C8 |
C9 |
C4 |
C5 |
359.6 |
360.0 |
| C5 |
C4 |
C9 |
C3 |
179.6 |
180.0 |
| C9 |
C4 |
C5 |
H4 |
180.0 |
180.0 |
| C6 |
C5 |
CAJ |
C4 |
179.7 |
180.3 |
| CAJ |
C5 |
C6 |
C7 |
179.8 |
179.7 |
| CAJ |
C5 |
C6 |
H6 |
359.8 |
359.7 |
| CAJ |
C5 |
C4 |
C9 |
180.3 |
180.3 |
| CAJ |
C5 |
C4 |
H4 |
0.3 |
0.2 |
| HAJ1 |
CAJ |
C5 |
HAJ2 |
240.0 |
240.0 |
| HAJ1 |
CAJ |
C5 |
HAJ3 |
120.0 |
120.0 |
| HAJ2 |
CAJ |
C5 |
HAJ3 |
240.0 |
240.1 |
| C7 |
C6 |
C5 |
C4 |
359.5 |
0.0 |
| C7 |
C6 |
C5 |
CAJ |
179.8 |
179.7 |
| C5 |
C6 |
C7 |
H6 |
180.0 |
179.9 |
| C6 |
C7 |
C8 |
N1 |
180.1 |
180.0 |
| C6 |
C7 |
C8 |
C9 |
0.1 |
360.0 |
| C8 |
C7 |
C6 |
H7 |
180.0 |
180.0 |
| C8 |
C7 |
C6 |
H6 |
180.1 |
180.1 |
| C6 |
C7 |
C8 |
H7 |
180.0 |
180.0 |
| N1 |
C8 |
C7 |
C9 |
180.0 |
180.0 |
| C7 |
C8 |
N1 |
C2 |
180.2 |
180.0 |
| C7 |
C8 |
N1 |
H1 |
0.3 |
0.0 |
| C7 |
C8 |
C9 |
C4 |
0.1 |
0.0 |
| C7 |
C8 |
C9 |
C3 |
180.1 |
180.0 |
| C7 |
C8 |
N1 |
C9 |
180.0 |
180.0 |
| N1 |
C8 |
C7 |
H7 |
0.1 |
0.1 |
| N1 |
C8 |
C9 |
C4 |
180.1 |
180.0 |
| N1 |
C8 |
C9 |
C3 |
0.0 |
0.0 |
| C8 |
N1 |
C2 |
C3 |
359.5 |
0.0 |
| C2 |
N1 |
C8 |
H1 |
180.0 |
180.0 |
| C8 |
N1 |
C2 |
H2 |
179.5 |
180.0 |
| C5 |
C4 |
C9 |
C8 |
359.6 |
360.0 |
| C7 |
C8 |
C9 |
N1 |
180.0 |
180.0 |
| C9 |
C8 |
C7 |
H7 |
180.1 |
180.0 |
| C9 |
C8 |
N1 |
C2 |
0.3 |
360.0 |
| C9 |
C8 |
N1 |
H1 |
180.3 |
180.0 |
| C4 |
C9 |
C8 |
C3 |
180.0 |
180.0 |
| C8 |
C9 |
C4 |
H4 |
179.6 |
180.0 |
| C8 |
C9 |
C3 |
C2 |
359.7 |
360.0 |
| C8 |
C9 |
C3 |
H3 |
179.7 |
180.0 |
| C2 |
N1 |
C8 |
C9 |
0.3 |
360.0 |
| C8 |
N1 |
C2 |
H1 |
180.0 |
180.0 |
| C9 |
C3 |
C2 |
N1 |
0.5 |
0.0 |
| C3 |
C2 |
N1 |
H2 |
180.0 |
180.0 |
| N1 |
C2 |
C3 |
H3 |
180.5 |
180.0 |
| C9 |
C4 |
C5 |
CAJ |
180.3 |
180.3 |
| C5 |
C4 |
C9 |
H4 |
180.0 |
180.0 |
| C8 |
C9 |
C4 |
C3 |
180.0 |
180.0 |
| C4 |
C9 |
C3 |
C2 |
179.6 |
180.0 |
| C4 |
C9 |
C3 |
H3 |
359.6 |
0.0 |
| C8 |
C9 |
C3 |
C4 |
180.0 |
180.0 |
| N1 |
C2 |
C3 |
C9 |
0.5 |
0.0 |
| C3 |
C9 |
C4 |
H4 |
359.6 |
0.0 |
| C9 |
C3 |
C2 |
H2 |
180.5 |
180.1 |
| C2 |
C3 |
C9 |
H3 |
180.0 |
180.0 |
| C3 |
C2 |
N1 |
H1 |
179.5 |
180.0 |
| N1 |
C2 |
C3 |
H2 |
180.0 |
180.0 |
| C9 |
C3 |
C2 |
H3 |
180.0 |
180.0 |
| H6 |
C6 |
C5 |
C4 |
179.5 |
179.9 |
| H6 |
C6 |
C5 |
CAJ |
359.8 |
359.7 |
| C5 |
C6 |
H6 |
C7 |
180.0 |
180.1 |
| H6 |
C6 |
C7 |
C8 |
180.1 |
180.1 |
| H6 |
C6 |
C7 |
H7 |
0.1 |
0.0 |
| H4 |
C4 |
C5 |
CAJ |
0.3 |
0.2 |
| C5 |
C4 |
H4 |
C9 |
180.0 |
180.0 |
| H4 |
C4 |
C9 |
C3 |
359.6 |
0.0 |
| C5 |
CAJ |
HAJ1 |
HAJ2 |
120.0 |
120.0 |
| C5 |
CAJ |
HAJ1 |
HAJ3 |
240.0 |
240.0 |
| HAJ2 |
CAJ |
HAJ1 |
HAJ3 |
120.0 |
120.0 |
| C5 |
CAJ |
HAJ2 |
HAJ1 |
240.0 |
240.0 |
| C5 |
CAJ |
HAJ2 |
HAJ3 |
120.0 |
120.0 |
| HAJ1 |
CAJ |
HAJ2 |
HAJ3 |
240.0 |
240.0 |
| C5 |
CAJ |
HAJ3 |
HAJ1 |
120.0 |
120.0 |
| C5 |
CAJ |
HAJ3 |
HAJ2 |
240.0 |
240.0 |
| HAJ1 |
CAJ |
HAJ3 |
HAJ2 |
120.0 |
120.0 |
| C6 |
C7 |
H7 |
C8 |
180.0 |
180.0 |
| H7 |
C7 |
C6 |
H6 |
0.1 |
0.0 |
| H7 |
C7 |
C8 |
N1 |
0.1 |
0.1 |
| H7 |
C7 |
C8 |
C9 |
180.1 |
180.0 |
| H1 |
N1 |
C8 |
C9 |
180.3 |
180.0 |
| C8 |
N1 |
H1 |
C2 |
180.0 |
180.0 |
| H1 |
N1 |
C2 |
C3 |
179.5 |
180.0 |
| H1 |
N1 |
C2 |
H2 |
359.5 |
359.9 |
| N1 |
C2 |
H2 |
C3 |
180.0 |
180.1 |
| H2 |
C2 |
N1 |
H1 |
359.5 |
359.9 |
| H2 |
C2 |
C3 |
H3 |
0.5 |
0.1 |
| C9 |
C3 |
H3 |
C2 |
180.0 |
180.0 |
| H3 |
C3 |
C2 |
H2 |
0.5 |
0.1 |