PDB Chemical Component 5LH

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5LH

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
O27 C26 1.450 1.215
C26 O35 1.200 1.347
C26 N25 1.494 1.348
N25 C24 1.478 1.464
O37 C36 1.223 1.213
O40 C15 1.233 1.213
C24 C36 1.504 1.507
C24 C23 1.497 1.530
C36 N11 1.437 1.369
C10 C08 1.519 1.530
N38 N39 1.311 1.286
N38 C22 1.366 1.338
N39 N20 1.335 1.287
C15 N16 1.474 1.368
C15 C14 1.602 1.507
N16 C17 1.426 1.483
C18 C17 1.614 1.531
C18 C19 1.515 1.530
N11 C06 1.422 1.483
C22 C23 1.516 1.506
C22 C21 1.422 1.354
C06 C05 1.499 1.508
C06 C07 1.501 1.530
N20 C19 1.399 1.465
N20 C21 1.368 1.354
C14 C13 1.595 1.530
C08 C07 1.565 1.530
C08 C09 1.518 1.530
C13 C03 1.499 1.529
N04 C05 1.439 1.362
N04 C03 1.417 1.478
C05 O12 1.268 1.213
C03 C02 1.491 1.530
C02 O01 1.309 1.429
N16 H1 1.000 0.970
C17 H2 1.099 1.090
C17 H3 1.099 1.090
C18 H4 1.101 1.089
C18 H5 1.100 1.090
C19 H6 1.100 1.090
C19 H7 1.100 1.090
C21 H8 1.080 1.079
C23 H9 1.100 1.090
C23 H10 1.100 1.090
C24 H11 1.100 1.090
N25 H12 1.000 0.970
N11 H14 1.000 0.970
C06 H15 1.100 1.089
C07 H16 1.100 1.090
C07 H17 1.100 1.090
C08 H18 1.100 1.090
C10 H19 1.100 1.089
C10 H20 1.100 1.091
C10 H21 1.100 1.090
C09 H22 1.101 1.090
C09 H23 1.100 1.090
C09 H24 1.100 1.091
N04 H25 1.000 0.969
C03 H26 1.100 1.089
C13 H27 1.100 1.090
C13 H28 1.100 1.091
C14 H29 1.100 1.090
C14 H30 1.100 1.090
C02 H31 1.100 1.091
C02 H32 1.100 1.090
O01 H33 0.950 0.967
O35 C1   1.452
C1 C2   1.507
C2 C3   1.382
C3 C4   1.382
C4 C5   1.382
C5 C6   1.382
C6 C7   1.383
C7 C2   1.382
C1 H13   1.090
C1 H34   1.090
C3 H35   1.080
C4 H36   1.081
C5 H37   1.080
C6 H38   1.080
C7 H39   1.080

Bond Angles for 5LH

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
O27 C26 O35 116.6 120.0
O27 C26 N25 122.1 120.0
O35 C26 N25 121.3 120.0
C26 O35 C1   117.0
C26 N25 C24 112.6 120.0
C26 N25 H12 123.7 120.0
N25 C24 C36 110.0 109.5
N25 C24 H11 108.8 109.5
O37 C36 N11 124.7 120.7
C24 C36 N11 114.6 118.5
C36 C24 H11 108.5 109.4
C24 C23 H9 109.5 109.5
C24 C23 H10 109.4 109.5
C36 N11 C06 122.9 114.8
C36 N11 H14 118.5 122.5
C10 C08 C09 112.5 109.5
C10 C08 H18 108.1 109.5
C15 N16 H1 118.8 122.6
C15 C14 H29 108.9 109.7
C15 C14 H30 108.9 109.3
C17 N16 H1 118.8 122.6
N16 C17 H2 110.7 109.6
N16 C17 H3 110.7 109.6
C18 C17 H2 110.7 109.7
C18 C17 H3 110.7 109.7
C19 C18 H4 110.5 109.5
C19 C18 H5 110.5 109.5
C18 C19 H6 111.3 109.5
C18 C19 H7 111.3 109.5
N11 C06 C05 109.4 108.5
N11 C06 C07 109.9 109.6
C06 N11 H14 118.5 122.6
N11 C06 H15 110.3 109.6
C22 C23 H9 109.5 109.5
C22 C23 H10 109.5 109.5
C22 C21 H8 125.2 126.9
C05 C06 C07 109.0 109.6
C06 C05 O12 121.9 120.5
C05 C06 H15 109.1 109.6
C07 C06 H15 109.1 109.8
C06 C07 H16 109.2 109.4
C06 C07 H17 109.2 109.5
N20 C19 H6 111.3 109.4
N20 C19 H7 111.3 109.5
N20 C21 H8 125.2 126.9
C14 C13 H27 109.5 109.5
C14 C13 H28 109.5 109.4
C08 C07 H16 109.2 109.5
C08 C07 H17 109.2 109.5
C09 C08 H18 108.2 109.4
C08 C09 H22 109.5 109.5
C08 C09 H23 109.4 109.5
C08 C09 H24 109.5 109.5
C13 C03 C02 110.3 109.6
C13 C03 H26 109.6 109.7
N04 C03 C02 108.7 109.6
C03 N04 H25 120.8 121.8
N04 C03 H26 110.8 109.6
C03 C02 O01 105.7 109.4
C02 C03 H26 109.8 109.6
C03 C02 H31 110.4 109.5
C03 C02 H32 110.4 109.5
O01 C02 H31 110.4 109.4
O01 C02 H32 110.4 109.5
C02 O01 H33 109.5 114.0
H2 C17 H3 109.5 109.6
H4 C18 H5 109.5 109.5
H6 C19 H7 109.5 109.5
H10 C23 H9 109.4 109.5
H16 C07 H17 109.5 109.4
H19 C10 H20 109.5 109.5
H19 C10 H21 109.4 109.5
H20 C10 H21 109.5 109.4
H22 C09 H23 109.5 109.4
H22 C09 H24 109.5 109.5
H23 C09 H24 109.5 109.4
H27 C13 H28 109.5 109.5
H29 C14 H30 109.4 109.5
H31 C02 H32 109.5 109.4
O35 C1 C2   109.5
O35 C1 H13   109.4
O35 C1 H34   109.5
C1 C2 C3   120.0
C2 C1 H13   109.5
C2 C1 H34   109.5
C2 C3 C4   120.0
C2 C3 H35   120.0
C3 C4 C5   120.0
C4 C3 H35   120.0
C3 C4 H36   120.0
C4 C5 C6   120.0
C5 C4 H36   120.0
C4 C5 H37   120.0
C5 C6 C7   120.0
C6 C5 H37   120.0
C5 C6 H38   120.1
C7 C6 H38   120.0
C6 C7 H39   120.0
H13 C1 H34   109.5

Torsion Angles for 5LH

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
O35 C26 O27 N25 180.2 180.3
O27 C26 O35 C1   359.7
O27 C26 N25 C24 164.9 0.3
O27 C26 N25 H12 344.9 180.4
O27 C26 O35 N25 179.8 179.8
O35 C26 N25 C24 344.7 180.0
O35 C26 N25 H12 164.7 0.1
C26 O35 C1 C2   180.0
C26 O35 C1 H13   300.0
C26 O35 C1 H34   60.0
O27 C26 N25 O35 180.2 180.2
N25 C26 O35 C1   180.0
C26 N25 C24 C36 232.3 194.9
C26 N25 C24 H11 350.9 314.9
C26 N25 C24 H12 180.0 180.1
N25 C24 C36 N11 163.2 84.4
C36 C24 N25 H11 241.4 240.0
N25 C24 C23 H9 150.8 135.0
N25 C24 C23 H10 270.8 255.0
C24 C36 O37 N11 181.0 180.0
O37 C36 C24 H11 223.5 144.5
O37 C36 N11 C06 2.5 0.1
O37 C36 N11 H14 182.5 180.1
O40 C15 N16 H1 1.2 180.2
O40 C15 C14 H29 95.5 257.8
O40 C15 C14 H30 214.8 137.8
N25 C24 C36 H11 118.8 120.0
O37 C36 C24 N11 179.1 180.0
C36 C24 C23 H9 29.1 14.9
C36 C24 C23 H10 149.0 135.0
C24 C36 N11 C06 181.5 180.1
C24 C36 N11 H14 1.5 0.1
C26 N25 C24 C23 112.5 74.8
C22 C23 C24 H9 240.0 240.0
C22 C23 C24 H10 120.0 119.9
H10 C23 C24 H9 119.9 120.0
N11 C36 C24 H11 44.4 324.4
C36 N11 C06 C05 292.4 103.6
C36 N11 C06 C07 172.8 344.0
C06 N11 C36 H14 180.0 180.0
C36 N11 C06 H15 52.4 223.3
C10 C08 C07 H16 166.0 305.4
C10 C08 C07 H17 46.3 185.3
C09 C08 C10 H18 240.6 120.0
C10 C08 C09 H22 180.0 180.0
C10 C08 C09 H23 300.0 300.0
C10 C08 C09 H24 60.0 60.0
N38 C22 C23 H9 168.3 87.7
N38 C22 C23 H10 48.3 327.7
N38 C22 C21 H8 179.3 180.1
N39 N20 C19 H6 337.2 43.0
N39 N20 C19 H7 214.7 283.1
N39 N20 C21 H8 181.5 179.9
C17 N16 C15 H1 180.0 179.7
C15 N16 C17 H2 244.2 213.7
C15 N16 C17 H3 5.8 334.0
C14 C15 N16 H1 180.8 0.5
C15 C14 C13 H27 311.4 125.8
C15 C14 C13 H28 71.5 5.9
H29 C14 C15 H30 240.7 120.0
C15 N16 C17 H1 180.0 180.3
C18 C17 N16 H2 240.8 240.2
C18 C17 N16 H3 119.2 119.8
H2 C17 N16 H3 238.5 239.6
C18 C17 N16 H1 305.0 273.6
N16 C17 C18 H2 119.2 119.8
N16 C17 C18 H3 240.8 240.2
H2 C17 C18 H3 121.5 120.5
C19 C18 C17 H2 63.1 72.8
C19 C18 C17 H3 301.5 312.4
N20 C19 C18 H6 241.2 240.0
N20 C19 C18 H7 118.8 120.0
H4 C18 C19 H5 121.3 120.0
H6 C19 C18 H7 237.5 240.0
C36 N11 C06 H14 180.0 180.0
C05 C06 N11 C07 119.6 119.7
N11 C06 C05 O12 328.5 87.7
C05 C06 N11 H15 240.0 240.3
C07 C06 N11 H15 120.3 120.6
N11 C06 C07 H16 61.9 310.0
N11 C06 C07 H17 181.5 70.0
C24 C23 C22 H9 120.0 120.0
C24 C23 C22 H10 240.0 240.1
C23 C22 C21 H8 359.4 0.1
H10 C23 C22 H9 240.0 240.0
N20 C21 C22 H8 180.0 179.9
N11 C06 C05 C07 239.8 240.3
C05 C06 N11 H14 112.4 283.6
N11 C06 C05 H15 120.7 119.7
C07 C06 C05 H15 240.9 239.4
C05 C06 C07 H16 302.0 191.1
C05 C06 C07 H17 61.7 311.0
N11 C06 C07 C05 119.9 119.0
C07 C06 N11 H14 352.8 164.0
N11 C06 C07 H15 239.0 239.5
C07 C06 C05 O12 88.7 207.3
C05 C06 C07 H15 119.1 120.5
C08 C07 C06 H16 239.8 240.0
C08 C07 C06 H17 120.2 120.1
H16 C07 C06 H17 240.3 240.0
N20 C19 C18 H4 341.3 3.6
N20 C19 C18 H5 220.0 243.6
C18 C19 N20 H6 118.8 120.0
C18 C19 N20 H7 241.2 240.0
H6 C19 N20 H7 122.4 120.0
C22 C21 N20 H8 180.0 180.1
C21 N20 C19 H6 160.1 223.1
C21 N20 C19 H7 37.6 103.1
C14 C13 C03 C02 159.1 338.5
C14 C13 C03 H26 38.1 218.2
H27 C13 C14 H28 239.9 120.0
C08 C07 C06 H15 62.7 310.6
C06 C07 C08 H16 120.1 119.9
C06 C07 C08 H17 239.8 239.9
H16 C07 C08 H17 119.7 120.0
C10 C08 C09 H18 119.4 240.0
C09 C08 C07 H16 41.4 65.3
C09 C08 C07 H17 281.7 305.3
H22 C09 C08 H23 240.0 240.0
H22 C09 C08 H24 120.0 120.0
H23 C09 C08 H24 240.0 240.0
N04 C03 C13 C02 118.4 119.8
C13 C03 N04 H25 282.6 9.6
N04 C03 C13 H26 239.4 240.1
C13 C03 C02 O01 181.5 306.5
C02 C03 C13 H26 121.0 120.3
C13 C03 C02 H31 300.9 66.5
C13 C03 C02 H32 62.1 186.5
N04 C05 C06 H15 28.3 147.9
C13 C03 N04 C02 240.5 240.2
C13 C03 N04 H26 119.8 119.9
N04 C03 C02 O01 63.8 187.2
C02 C03 N04 H26 239.3 239.7
N04 C03 C02 H31 183.2 307.2
N04 C03 C02 H32 304.4 67.2
O12 C05 C06 C07 88.7 207.3
O12 C05 C06 H15 207.8 328.0
C13 C03 C02 H26 239.1 239.6
C02 C03 N04 H25 42.1 129.4
N04 C03 C02 H26 121.3 120.3
O01 C02 C03 H31 240.6 240.0
O01 C02 C03 H32 119.4 120.0
C03 C02 O01 H33 180.0 180.0
H31 C02 C03 H32 238.8 240.0
O01 C02 C03 H26 302.4 66.9
C03 C02 O01 H31 119.4 120.0
C03 C02 O01 H32 240.6 240.0
H31 C02 O01 H32 121.2 120.0
H1 N16 C17 H2 64.2 33.4
H1 N16 C17 H3 185.8 153.8
H2 C17 N16 H1 64.2 33.4
N16 C17 H2 H3 122.2 120.4
C18 C17 H2 H3 237.7 239.4
H3 C17 N16 H1 185.8 153.8
N16 C17 H3 H2 237.8 239.6
C18 C17 H3 H2 122.3 120.5
H4 C18 C17 H2 182.4 192.9
H4 C18 C17 H3 60.8 72.4
C19 C18 H4 H5 238.1 240.0
H4 C18 C19 H6 100.1 123.6
H4 C18 C19 H7 222.6 243.6
H5 C18 C17 H2 303.7 312.9
H5 C18 C17 H3 182.2 192.4
C19 C18 H5 H4 121.9 120.0
H5 C18 C19 H6 338.8 3.6
H5 C18 C19 H7 101.3 123.6
H6 C19 C18 H4 100.1 123.6
H6 C19 C18 H5 338.8 3.6
C18 C19 H6 H7 123.5 120.0
N20 C19 H6 H7 236.5 240.0
H7 C19 C18 H4 222.6 243.6
H7 C19 C18 H5 101.3 123.6
C18 C19 H7 H6 236.5 240.0
N20 C19 H7 H6 123.5 120.0
C24 C23 H9 H10 120.0 120.0
C22 C23 H9 H10 240.0 240.0
C24 C23 H10 H9 240.0 239.9
C22 C23 H10 H9 120.0 120.0
N25 C24 H11 C36 240.4 240.0
H11 C24 C36 N11 44.4 324.4
H11 C24 C23 H9 272.5 255.0
H11 C24 C23 H10 32.5 15.0
C26 N25 H12 C24 180.0 179.9
H12 N25 C24 C36 52.3 14.8
H12 N25 C24 H11 170.9 134.8
C36 N11 H14 C06 180.0 180.0
H14 N11 C06 C05 112.4 283.6
H14 N11 C06 C07 352.8 164.0
H14 N11 C06 H15 232.5 43.3
N11 C06 H15 C05 239.8 241.0
N11 C06 H15 C07 120.8 120.5
H15 C06 N11 H14 232.5 43.3
C05 C06 H15 C07 241.0 239.5
H15 C06 C05 O12 207.8 328.0
H15 C06 C07 H16 182.9 70.5
H15 C06 C07 H17 302.6 190.5
H16 C07 C06 H15 182.9 70.5
C06 C07 H16 H17 119.5 120.0
C08 C07 H16 H17 240.5 239.9
H17 C07 C06 H15 302.6 190.5
C06 C07 H17 H16 240.5 240.0
C08 C07 H17 H16 119.5 120.0
C10 C08 H18 C09 237.9 120.0
H18 C08 C07 H16 284.8 185.3
H18 C08 C07 H17 165.2 65.3
H18 C08 C09 H22 60.6 300.0
H18 C08 C09 H23 180.6 60.0
H18 C08 C09 H24 300.7 180.0
H19 C10 C08 C09 302.0 174.6
H19 C10 C08 H18 61.4 54.6
H20 C10 H19 H21 120.0 120.0
H20 C10 C08 C09 62.1 294.6
H20 C10 C08 H18 181.4 174.6
H19 C10 H20 H21 240.0 240.0
H21 C10 C08 C09 182.1 54.6
H21 C10 C08 H18 301.4 294.6
H19 C10 H21 H20 120.0 120.0
H22 C09 C08 H18 60.6 300.0
C08 C09 H22 H23 120.0 120.1
C08 C09 H22 H24 240.0 240.0
H23 C09 H22 H24 120.0 119.9
H23 C09 C08 H18 180.6 60.0
C08 C09 H23 H22 240.0 240.0
C08 C09 H23 H24 120.0 120.0
H22 C09 H23 H24 240.0 240.1
H24 C09 C08 H18 300.7 180.0
C08 C09 H24 H22 120.0 120.0
C08 C09 H24 H23 240.0 240.0
H22 C09 H24 H23 120.0 119.9
H25 N04 C03 C02 42.1 129.4
H25 N04 C03 H26 162.8 249.7
C13 C03 H26 C02 121.4 120.3
N04 C03 H26 C02 240.0 239.8
H26 C03 N04 H25 162.8 249.7
H26 C03 C02 O01 302.4 66.9
H26 C03 C02 H31 61.8 186.9
H26 C03 C02 H32 183.0 306.9
C14 C13 H27 H28 120.1 240.1
H27 C13 C03 C02 39.1 98.5
H27 C13 C03 H26 278.1 338.2
C14 C13 H28 H27 239.9 119.9
H28 C13 C03 C02 279.0 218.6
H28 C13 C03 H26 158.0 98.2
C15 C14 H29 H30 118.9 240.1
H29 C14 C13 H27 191.1 246.1
H29 C14 C13 H28 311.1 126.1
C15 C14 H30 H29 241.1 120.1
H30 C14 C13 H27 71.8 6.1
H30 C14 C13 H28 191.9 246.1
C03 C02 H31 O01 243.5 240.0
H31 C02 C03 H26 61.8 186.9
C03 C02 H31 H32 121.8 120.1
O01 C02 H31 H32 238.3 240.0
H31 C02 O01 H33 60.6 60.0
C03 C02 H32 O01 116.5 120.0
H32 C02 C03 H26 183.0 306.9
C03 C02 H32 H31 238.2 239.9
O01 C02 H32 H31 121.7 119.9
H32 C02 O01 H33 299.4 300.1
H33 O01 C02 H31 60.6 60.0
H33 O01 C02 H32 299.4 300.1
C1 O35 C26 N25   180.0
O35 C1 C2 C3   89.9
C2 C1 O35 H13   240.0
C2 C1 O35 H34   120.0
H13 C1 O35 H34   240.0
O35 C1 C2 H13   120.0
O35 C1 C2 H34   240.0
C1 C2 C3 C4   180.0
C1 C2 C3 H35   0.0
H13 C1 C2 H34   120.0
C3 C2 C1 H13   330.0
C3 C2 C1 H34   210.0
C2 C3 C4 C5   0.0
C4 C3 C2 H35   180.0
C2 C3 C4 H36   180.0
C2 C3 C4 H35   180.0
C3 C4 C5 C6   360.0
C5 C4 C3 H36   180.0
C3 C4 C5 H37   179.9
C5 C4 C3 H35   180.0
C3 C4 C5 H36   180.0
C4 C5 C6 C7   359.8
C6 C5 C4 H37   180.1
C4 C5 C6 H38   180.0
C6 C5 C4 H36   180.0
C4 C5 C6 H37   179.9
C7 C6 C5 H38   179.8
C5 C6 C7 H39   180.0
C7 C6 C5 H37   179.8
C5 C6 C7 H38   180.2
C7 C2 C1 H13   149.7
C7 C2 C1 H34   29.7
C7 C2 C3 H35   180.3
O35 C1 H13 C2   240.0
O35 C1 H13 H34   120.0
H13 C1 C2 C3   330.0
C2 C1 H13 H34   239.9
O35 C1 H34 C2   120.0
O35 C1 H34 H13   240.0
H34 C1 C2 C3   210.0
C2 C1 H34 H13   120.0
C2 C3 H35 C4   180.0
H35 C3 C4 C5   180.0
H35 C3 C4 H36   359.9
C3 C4 H36 C5   180.0
H36 C4 C3 H35   359.9
H36 C4 C5 C6   180.0
H36 C4 C5 H37   360.0
C4 C5 H37 C6   180.1
H37 C5 C4 H36   360.0
H37 C5 C6 C7   179.8
H37 C5 C6 H38   0.0
C5 C6 H38 C7   179.8
H38 C6 C5 H37   0.0
H38 C6 C7 H39   359.8
H39 C7 C6 H38   359.8