Atom Nomenclature for 5LH

The atom nomenclature in PDB data files was revised with the release of data in the PDB Format Version 3.0. These changes make the PDB atom names used by PDB compliant with existing IUPAC nomenclature for standard amino acid and nucleotides (Pure & Appl. Chem., 70, 117-142, 1998) with the exception of the well established convention for C-terminal atoms OXT and HXT. A small number of additional changes were introduced in Version 3 to make atom labeling more conventional. The following chemical diagrams and tables provide the correspondences between atom names used in Version 3 and Version 2 PDB formats.

Labeled Chemical Diagrams

Chemical diagram with format V3 atom labels (heavy atoms)
Chemical diagram with format V3 atom labels (all atoms)
Chemical diagram with format V2 atom labels (heavy atoms)
Chemical diagram with format V2 atom labels (all atoms)

Atom Name Correspondences for 5LH

Atom Name (V3) Atom Name (V2)
C26 C8
O27 O1
O35 O2
C1 C21
C2 C27
C3 C22
C4 C23
C5 C24
C6 C25
C7 C26
N16 N1
C17 C1
C18 C2
C19 C3
N20 N2
C21 C4
C22 C5
C23 C6
C24 C7
N25 N3
C36 C9
O37 O3
N38 N4
N39 N5
N11 N6
C06 C10
C05 C11
O12 O4
C07 C12
C08 C13
C10 C14
C09 C15
N04 N7
C03 C16
C13 C17
C14 C18
C15 C19
O40 O5
C02 C20
O01 O6
H13 H13
H34 H34
H35 H35
H36 H36
H37 H37
H38 H38
H39 H39
H2 H2
H3 H3
H4 H4
H5 H5
H6 H6
H7 H7
H8 H8
H10 H10
H9 H9
H11 H11
H1 H1
H12 H12
H14 H14
H15 H15
H16 H16
H17 H17
H18 H18
H19 H19
H20 H20
H21 H21
H22 H22
H23 H23
H24 H24
H25 H25
H26 H26
H27 H27
H28 H28
H29 H29
H30 H30
H31 H31
H32 H32
H33 H33