PDB Chemical Component 5JN

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5JN

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
C1 C5 1.524 1.507
C12 C13 1.540 1.507
C12 C10 1.427 1.507
C4 C5 1.426 1.382
C4 C3 1.429 1.389
N9 C3 1.373 1.400
N9 C10 1.298 1.347
C5 C6 1.423 1.382
C3 C8 1.435 1.389
C13 C14 1.420 1.383
C13 C18 1.427 1.383
C10 O11 1.232 1.213
C14 C15 1.462 1.382
C18 C17 1.422 1.382
C21 C20 1.545 1.529
C15 C16 1.437 1.388
C6 C7 1.421 1.383
C8 C7 1.424 1.382
C17 C16 1.429 1.388
C16 O19 1.437 1.359
C7 C2 1.521 1.506
C20 O19 1.481 1.430
C20 C23 1.528 1.507
C20 C22 1.531 1.530
O24 C23 1.241 1.208
C23 O25 1.347 1.342
O25 C26 1.442 1.452
C27 C26 1.536 1.530
C27 O28 1.426 1.429
O30 N29 1.215 1.218
N29 O28 1.409 1.415
N29 O31 1.211 1.219
C1 H1 1.101 1.090
C1 H2 1.100 1.090
C1 H3 1.100 1.090
C6 H4 1.080 1.080
C4 H5 1.080 1.080
C2 H6 1.100 1.090
C2 H7 1.100 1.090
C2 H8 1.100 1.090
C21 H9 1.100 1.090
C21 H10 1.100 1.090
C21 H11 1.100 1.090
C18 H12 1.080 1.079
C17 H13 1.080 1.079
C8 H14 1.080 1.080
N9 H15 1.000 0.970
C12 H16 1.100 1.090
C12 H17 1.100 1.090
C14 H18 1.080 1.080
C15 H19 1.080 1.080
C22 H20 1.100 1.090
C22 H21 1.100 1.090
C22 H22 1.100 1.090
C26 H23 1.100 1.090
C26 H24 1.100 1.090
C27 H25 1.100 1.090
C27 H26 1.100 1.090

Bond Angles for 5JN

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C1 C5 C6 119.8 120.0
C5 C1 H1 109.5 109.5
C5 C1 H2 109.4 109.5
C5 C1 H3 109.5 109.5
C12 C13 C14 119.4 120.0
C4 C3 C8 118.7 119.9
C3 C4 H5 119.8 120.1
N9 C10 O11 124.3 120.0
C10 N9 H15 115.6 120.1
C5 C6 C7 120.1 120.2
C5 C6 H4 120.0 119.9
C3 C8 C7 120.8 119.9
C3 C8 H14 119.6 120.0
C18 C13 C14 119.8 120.2
C13 C14 C15 119.5 120.0
C13 C14 H18 120.2 120.0
C13 C18 C17 120.6 120.0
C13 C18 H12 119.7 120.0
C14 C15 C16 120.5 120.0
C15 C14 H18 120.2 120.0
C14 C15 H19 119.8 120.0
C18 C17 C16 121.3 119.9
C17 C18 H12 119.7 120.0
C18 C17 H13 119.4 120.1
C21 C20 O19 112.8 109.4
C21 C20 C23 110.2 109.5
C21 C20 C22 108.3 109.5
C20 C21 H9 109.5 109.5
C20 C21 H10 109.5 109.5
C20 C21 H11 109.5 109.5
C17 C16 C15 118.3 119.9
C15 C16 O19 124.8 120.0
C16 C15 H19 119.7 120.0
C6 C7 C2 120.4 120.0
C7 C6 H4 120.0 119.9
C17 C16 O19 116.9 120.1
C16 C17 H13 119.3 120.0
C20 O19 C16 128.9 117.0
C7 C2 H6 109.5 109.5
C7 C2 H7 109.5 109.5
C7 C2 H8 109.5 109.5
O19 C20 C23 116.5 109.4
O19 C20 C22 101.4 109.5
C22 C20 C23 106.7 109.5
C20 C23 O25 117.1 120.0
C20 C22 H20 109.5 109.4
C20 C22 H21 109.5 109.5
C20 C22 H22 109.5 109.5
O24 C23 O25 122.6 120.0
C23 O25 C26 113.2 117.0
O25 C26 H23 109.4 109.5
O25 C26 H24 109.4 109.5
C27 C26 H23 109.4 109.4
C27 C26 H24 109.4 109.5
O28 C27 H25 109.4 109.4
O28 C27 H26 109.4 109.5
O30 N29 O28 120.3 120.0
O30 N29 O31 119.6 120.0
H1 C1 H2 109.5 109.5
H1 C1 H3 109.5 109.5
H2 C1 H3 109.5 109.4
H6 C2 H7 109.5 109.5
H6 C2 H8 109.5 109.5
H7 C2 H8 109.4 109.4
H9 C21 H10 109.4 109.4
H9 C21 H11 109.5 109.4
H10 C21 H11 109.4 109.5
H16 C12 H17 109.5 109.4
H20 C22 H21 109.5 109.5
H20 C22 H22 109.4 109.5
H21 C22 H22 109.5 109.4
H23 C26 H24 109.5 109.5
H25 C27 H26 109.4 109.5

Torsion Angles for 5JN

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C1 C5 C6 C7 180.1 180.0
C1 C5 C6 H4 0.1 359.7
H1 C1 C5 H2 240.0 240.0
H1 C1 C5 H3 120.0 120.0
H2 C1 C5 H3 240.0 240.0
C18 C13 C12 C14 180.1 179.8
C12 C13 C14 C15 180.1 179.8
C12 C13 C14 H18 0.1 359.7
C12 C13 C18 H12 0.0 0.2
C10 C12 C13 C14 247.6 90.0
C12 C10 N9 H15 359.7 5.5
C4 C5 C1 H1 89.6 269.9
C4 C5 C1 H2 209.6 30.0
C4 C5 C1 H3 329.6 149.9
C4 C5 C6 C7 0.8 0.1
C4 C5 C6 H4 180.8 179.7
C4 C3 C8 C7 359.6 360.0
C4 C3 C8 H14 179.6 179.9
N9 C3 C4 H5 359.9 360.0
N9 C3 C8 H14 359.9 360.0
C6 C5 C1 H1 270.4 90.0
C6 C5 C1 H2 30.3 210.0
C6 C5 C1 H3 150.4 330.0
C5 C6 C7 C2 179.9 179.7
C7 C6 C5 H4 180.0 180.4
C8 C3 C4 H5 180.3 180.0
C14 C13 C18 C17 0.1 0.0
C14 C13 C18 H12 180.1 180.0
C13 C14 C15 C16 359.9 359.9
C15 C14 C13 H18 180.0 180.1
C13 C14 C15 H19 179.9 180.0
C12 C13 C18 C14 179.9 180.2
C18 C13 C14 C15 360.0 0.0
C18 C13 C14 H18 180.0 179.9
C13 C18 C17 C16 359.9 0.0
C17 C18 C13 H12 180.0 180.0
C13 C18 C17 H13 179.9 180.0
O11 C10 N9 H15 179.5 185.5
C13 C14 C15 H18 180.0 179.9
C17 C16 C15 C14 0.1 0.1
C14 C15 C16 O19 180.1 180.0
C16 C15 C14 H19 180.0 179.9
C17 C18 C13 C14 0.1 0.0
C13 C18 C17 H12 180.0 180.0
C18 C17 C16 C15 360.0 359.9
C18 C17 C16 O19 180.0 180.0
C16 C17 C18 H13 180.0 180.0
C21 C20 O19 C16 297.9 179.3
O19 C20 C21 C23 132.2 120.0
O19 C20 C21 C22 248.5 240.0
C22 C20 C21 C23 243.6 239.9
C21 C20 C23 O25 130.8 299.9
C21 C20 C22 H20 180.0 67.4
C21 C20 C22 H21 300.0 187.5
C21 C20 C22 H22 60.0 307.4
H9 C21 C20 H10 240.0 240.0
H9 C21 C20 H11 120.0 120.0
H10 C21 C20 H11 240.0 240.0
C16 C15 C14 H18 179.9 180.0
C14 C15 C16 H19 180.0 180.1
C17 C16 C15 O19 180.1 180.1
C15 C16 C17 H13 179.9 180.0
C20 O19 C16 C15 337.6 5.9
C5 C6 C7 H4 180.0 179.6
C3 C8 C7 C6 0.7 0.0
C6 C7 C2 H6 89.6 90.0
C6 C7 C2 H7 209.6 210.0
C6 C7 C2 H8 329.6 330.0
C3 C8 C7 H14 180.0 179.9
C8 C7 C6 H4 179.1 180.3
C8 C7 C2 H6 270.4 269.7
C8 C7 C2 H7 30.4 29.8
C8 C7 C2 H8 150.4 149.7
C14 C15 C16 C17 0.1 0.1
C16 C17 C18 H12 179.9 180.0
C18 C17 C16 H13 180.0 180.0
C15 C16 C17 O19 179.9 179.9
C17 C16 C15 H19 180.1 180.0
C20 O19 C16 C17 157.5 185.8
C17 C16 O19 C15 179.9 179.9
O19 C16 C15 H19 0.1 360.0
O19 C16 C17 H13 0.0 0.0
C16 O19 C20 C23 66.8 299.3
C16 O19 C20 C22 182.2 59.3
C3 C8 C7 C2 179.9 180.3
C2 C7 C6 H4 359.9 0.1
H6 C2 C7 H7 240.0 240.0
H6 C2 C7 H8 120.0 120.0
H7 C2 C7 H8 240.0 240.0
C21 C20 O19 C23 231.1 240.0
C21 C20 O19 C22 115.7 120.0
O19 C20 C21 H9 180.0 64.2
O19 C20 C21 H10 300.0 184.1
O19 C20 C21 H11 60.0 304.2
C15 C16 O19 C20 337.6 5.9
C17 C16 O19 C20 157.5 185.8
C22 C20 O19 C23 115.4 120.0
O19 C20 C23 O25 0.6 180.0
O19 C20 C22 H20 298.9 187.4
O19 C20 C22 H21 58.9 307.4
O19 C20 C22 H22 179.0 67.4
C21 C20 C23 O19 130.2 120.0
C21 C20 C23 C22 242.6 239.9
C23 C20 C21 H9 47.8 304.2
C23 C20 C21 H10 167.8 64.2
C23 C20 C21 H11 287.8 184.2
C23 C20 O19 C16 66.8 299.3
O19 C20 C23 C22 112.4 120.0
C23 C20 C22 H20 61.4 307.4
C23 C20 C22 H21 181.4 67.4
C23 C20 C22 H22 301.4 187.4
O24 C23 C20 O25 179.7 180.0
C20 C23 O25 C26 132.4 180.0
C21 C20 C22 O19 241.1 240.0
C21 C20 C22 C23 118.6 120.1
C22 C20 C21 H9 291.5 184.1
C22 C20 C21 H10 51.5 304.1
C22 C20 C21 H11 171.4 64.2
C22 C20 O19 C16 182.2 59.3
O19 C20 C22 C23 237.5 240.0
C22 C20 C23 O25 248.2 60.0
H20 C22 C20 H21 240.0 240.0
H20 C22 C20 H22 120.0 120.0
H21 C22 C20 H22 240.0 240.0
C20 C23 O24 O25 180.3 180.0
O24 C23 O25 C26 312.6 360.0
C23 O25 C26 H23 218.1 300.0
C23 O25 C26 H24 338.0 60.0
C27 C26 O25 H23 240.0 240.0
C27 C26 O25 H24 120.0 120.0
H23 C26 O25 H24 240.1 240.0
O25 C26 C27 H23 120.0 120.0
O25 C26 C27 H24 239.9 240.0
H23 C26 C27 H24 119.9 120.0
O28 C27 C26 H23 60.6 305.0
O28 C27 C26 H24 300.7 185.0
O30 N29 O28 C27 63.7 360.0
H25 C27 O28 H26 119.9 120.1
N29 O28 C27 H25 24.9 60.1
N29 O28 C27 H26 265.0 300.0
O30 N29 O28 O31 180.6 180.0
O30 N29 O31 O28 179.4 180.0
H1 C1 C5 C6 270.4 90.0
C5 C1 H1 H2 120.0 120.0
C5 C1 H1 H3 240.0 240.0
H2 C1 H1 H3 120.0 120.0
H2 C1 C5 C6 30.3 210.0
C5 C1 H2 H1 240.0 240.0
C5 C1 H2 H3 120.0 120.0
H1 C1 H2 H3 240.0 240.0
H3 C1 C5 C6 150.4 330.0
C5 C1 H3 H1 120.0 120.0
C5 C1 H3 H2 240.0 240.0
H1 C1 H3 H2 120.0 120.0
C5 C6 H4 C7 180.0 180.4
H4 C6 C7 C2 359.9 0.1
H5 C4 C3 C8 180.3 180.0
C7 C2 H6 H7 120.0 120.0
C7 C2 H6 H8 240.0 240.0
H7 C2 H6 H8 120.0 120.0
C7 C2 H7 H6 240.0 240.0
C7 C2 H7 H8 120.0 120.0
H6 C2 H7 H8 240.0 240.0
C7 C2 H8 H6 120.0 120.0
C7 C2 H8 H7 240.0 240.0
H6 C2 H8 H7 120.0 120.0
H9 C21 C20 O19 180.0 64.2
H9 C21 C20 C23 47.8 304.2
H9 C21 C20 C22 291.5 184.1
C20 C21 H9 H10 120.0 120.0
C20 C21 H9 H11 240.0 240.0
H10 C21 H9 H11 120.0 119.9
H10 C21 C20 O19 300.0 184.1
H10 C21 C20 C23 167.8 64.2
H10 C21 C20 C22 51.5 304.1
C20 C21 H10 H9 240.0 240.0
C20 C21 H10 H11 120.0 120.0
H9 C21 H10 H11 240.0 240.1
H11 C21 C20 O19 60.0 304.2
H11 C21 C20 C23 287.8 184.2
H11 C21 C20 C22 171.4 64.2
C20 C21 H11 H9 120.0 120.0
C20 C21 H11 H10 240.0 239.9
H9 C21 H11 H10 120.0 119.9
H12 C18 C13 C14 180.1 180.0
C13 C18 H12 C17 180.0 180.0
H12 C18 C17 C16 179.9 180.0
H12 C18 C17 H13 359.9 0.0
C18 C17 H13 C16 180.0 180.0
H13 C17 C18 H12 359.9 0.0
H13 C17 C16 C15 179.9 180.0
H13 C17 C16 O19 0.0 0.0
C3 C8 H14 C7 180.0 180.1
H15 N9 C10 O11 179.5 185.5
H16 C12 C13 C14 8.4 210.0
H17 C12 C13 C14 126.8 330.0
C13 C14 H18 C15 180.0 180.1
H18 C14 C15 C16 179.9 180.0
H18 C14 C15 H19 359.9 0.1
C14 C15 H19 C16 180.0 179.9
H19 C15 C14 H18 359.9 0.1
H19 C15 C16 O19 0.1 360.0
H20 C22 C20 C23 61.4 307.4
C20 C22 H20 H21 120.0 120.0
C20 C22 H20 H22 240.0 240.0
H21 C22 H20 H22 120.0 120.0
H21 C22 C20 C23 181.4 67.4
C20 C22 H21 H20 240.0 240.0
C20 C22 H21 H22 120.0 120.0
H20 C22 H21 H22 240.0 240.0
H22 C22 C20 C23 301.4 187.4
C20 C22 H22 H20 120.0 120.0
C20 C22 H22 H21 240.0 240.0
H20 C22 H22 H21 120.0 120.1
O25 C26 H23 H24 119.9 120.0
C27 C26 H23 H24 240.1 240.0
O25 C26 H24 H23 240.1 240.0
C27 C26 H24 H23 119.9 120.0
H25 C27 C26 H23 180.6 65.0
H25 C27 C26 H24 60.7 305.0
O28 C27 H25 H26 240.1 240.0
H26 C27 C26 H23 300.5 185.0
H26 C27 C26 H24 180.6 65.0
O28 C27 H26 H25 119.9 120.0