PDB Chemical Component 5IU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5IU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
N1 C2 1.391 1.345
N1 C6 1.370 1.369
N1 C1' 1.514 1.464
C2 N3 1.363 1.346
C2 O2 1.222 1.216
N3 C4 1.379 1.348
N3 HN3 1.021 0.971
C4 C5 1.428 1.416
C4 O4 1.255 1.217
C5 C6 1.427 1.350
C5 I5 2.118 2.095
C6 H6 1.102 1.079
C1' C2' 1.525 1.545
C1' O4' 1.452 1.443
C1' H1' 1.116 1.091
C2' C3' 1.513 1.545
C2' H2' 1.116 1.090
C2' H2'' 1.115 1.089
C3' C4' 1.490 1.544
C3' O3' 1.417 1.429
C3' H3' 1.115 1.090
C4' O4' 1.450 1.447
C4' C5' 1.532 1.529
C4' H4' 1.115 1.091
O3' HO3' 0.950 0.967
C5' O5' 1.449 1.429
C5' H5' 1.116 1.090
C5' H5'' 1.115 1.089
O5' P 1.639 1.610
P OP1 1.482 1.479
P OP2 1.492 1.610
P OP3 1.462 1.610
OP2 HOP2 0.950 0.967
OP3 HOP3 0.950 0.967

Bond Angles for 5IU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
C2 N1 C6 121.0 120.6
C2 N1 C1' 119.6 119.7
N1 C2 N3 118.9 120.9
N1 C2 O2 122.6 119.5
C6 N1 C1' 119.3 119.7
N1 C6 C5 120.1 119.7
N1 C6 H6 117.9 120.1
N1 C1' C2' 115.3 110.4
N1 C1' O4' 104.4 110.5
N1 C1' H1' 107.6 110.3
N3 C2 O2 118.5 119.5
C2 N3 C4 123.6 120.3
C2 N3 HN3 117.6 119.8
C4 N3 HN3 118.9 119.8
N3 C4 C5 117.8 119.4
N3 C4 O4 119.3 120.4
C5 C4 O4 122.9 120.3
C4 C5 C6 118.6 119.1
C4 C5 I5 119.5 120.4
C6 C5 I5 121.8 120.5
C5 C6 H6 122.0 120.1
C2' C1' O4' 104.3 104.8
C2' C1' H1' 107.6 110.4
C1' C2' C3' 101.0 104.0
C1' C2' H2' 115.4 110.5
C1' C2' H2'' 115.4 110.5
O4' C1' H1' 118.0 110.4
C1' O4' C4' 109.9 105.4
C3' C2' H2' 115.4 110.6
C3' C2' H2'' 115.5 110.6
C2' C3' C4' 102.6 104.2
C2' C3' O3' 114.0 110.5
C2' C3' H3' 110.6 110.5
H2' C2' H2'' 95.0 110.5
C4' C3' O3' 107.7 110.5
C4' C3' H3' 116.6 110.5
C3' C4' O4' 104.4 104.7
C3' C4' C5' 115.8 110.7
C3' C4' H4' 108.7 110.3
O3' C3' H3' 105.6 110.5
C3' O3' HO3' 114.1 106.8
O4' C4' C5' 109.4 110.4
O4' C4' H4' 115.3 110.3
C5' C4' H4' 103.7 110.3
C4' C5' O5' 110.6 109.5
C4' C5' H5' 111.7 109.5
C4' C5' H5'' 111.7 109.5
O5' C5' H5' 111.8 109.4
O5' C5' H5'' 111.8 109.5
C5' O5' P 122.7 106.8
H5' C5' H5'' 98.6 109.5
O5' P OP1 108.2 109.5
O5' P OP2 109.8 109.5
O5' P OP3 109.8 109.5
OP1 P OP2 109.8 109.5
OP1 P OP3 109.6 109.5
OP2 P OP3 109.6 109.5
P OP2 HOP2 109.9 106.8
P OP3 HOP3 109.8 106.8

Torsion Angles for 5IU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
C6 N1 C2 C1' 183.0 179.7
C2 N1 C6 C5 358.3 0.3
C2 N1 C6 H6 178.3 180.2
C2 N1 C1' C2' 103.1 299.7
C2 N1 C1' O4' 216.9 55.2
C2 N1 C1' H1' 343.0 177.5
N3 C2 N1 O2 180.6 179.3
N1 C2 N3 C4 1.1 0.6
N1 C2 N3 HN3 181.1 180.3
C2 N1 C6 C1' 177.0 180.3
C6 N1 C2 N3 0.2 359.4
C6 N1 C2 O2 179.6 180.1
C6 N1 C1' C2' 280.1 120.0
C6 N1 C1' O4' 33.9 235.5
C6 N1 C1' H1' 160.1 357.7
C4 C5 C6 N1 1.9 360.0
N1 C6 C5 I5 181.4 180.0
C5 C6 N1 H6 180.0 180.1
C2 N1 C1' C6 182.9 179.7
C1' N1 C2 N3 177.2 179.6
C1' N1 C2 O2 356.6 0.3
C1' N1 C6 C5 181.3 180.1
C1' N1 C6 H6 1.3 360.0
C2' C1' N1 O4' 246.2 244.5
C2' C1' N1 H1' 120.1 122.2
N1 C1' C2' C3' 146.4 142.9
N1 C1' C2' H2' 271.6 24.3
N1 C1' C2' H2'' 21.1 261.6
O4' C1' N1 H1' 233.8 237.7
N1 C1' O4' C4' 227.4 200.7
N3 C2 N1 C6 0.2 359.4
N3 C2 N1 C1' 177.2 179.6
N1 C2 N3 O2 179.4 180.7
C4 N3 C2 HN3 180.0 180.4
C2 N3 C4 C5 359.2 359.7
C2 N3 C4 O4 179.1 179.6
O2 C2 N1 C6 179.6 180.1
O2 C2 N1 C1' 356.6 0.3
N1 C2 O2 N3 180.6 179.3
O2 C2 N3 C4 181.7 180.0
O2 C2 N3 HN3 1.7 359.6
C4 N3 C2 O2 181.7 180.0
C2 N3 C4 HN3 180.0 179.6
C5 C4 N3 O4 180.1 180.0
N3 C4 C5 C6 359.3 0.0
N3 C4 C5 I5 179.8 180.0
HN3 N3 C2 O2 1.7 359.6
C2 N3 HN3 C4 180.0 180.4
HN3 N3 C4 C5 179.2 180.0
HN3 N3 C4 O4 359.1 360.0
N1 C6 C5 C4 1.9 360.0
C5 C4 N3 HN3 179.2 180.0
N3 C4 C5 O4 179.9 180.0
C6 C5 C4 I5 179.5 180.0
C4 C5 C6 H6 181.9 180.1
O4 C4 N3 HN3 359.1 360.0
N3 C4 O4 C5 180.1 180.0
O4 C4 C5 C6 179.4 180.1
O4 C4 C5 I5 359.9 0.0
C5 C6 N1 C1' 181.3 180.1
N1 C6 C5 H6 180.0 179.9
C6 C5 C4 O4 179.4 180.1
C4 C5 C6 I5 180.5 180.0
I5 C5 C4 O4 359.9 0.0
C4 C5 I5 C6 179.5 180.0
I5 C5 C6 H6 1.4 0.1
H6 C6 N1 C1' 1.3 360.0
N1 C6 H6 C5 180.0 180.1
H6 C6 C5 I5 1.4 0.1
N1 C1' C2' O4' 113.8 119.0
N1 C1' C2' H1' 240.0 237.8
O4' C1' C2' H1' 126.1 118.9
C2' C1' O4' C4' 348.8 319.6
C3' C2' C1' H2' 234.8 118.7
C3' C2' C1' H2'' 125.3 241.3
C1' C2' C3' C4' 318.2 359.9
C1' C2' C3' O3' 74.3 118.7
C1' C2' C3' H3' 193.2 241.2
H2' C2' C1' H2'' 250.6 122.6
N1 C1' O4' C2' 238.7 241.1
N1 C1' O4' H1' 119.3 122.2
C2' C1' O4' H1' 240.7 241.2
O4' C1' C2' C3' 32.6 23.9
O4' C1' C2' H2' 157.8 265.3
O4' C1' C2' H2'' 267.2 142.6
C3' C4' O4' C1' 344.7 40.3
C1' O4' C4' C5' 109.2 159.5
C1' O4' C4' H4' 225.5 281.6
N1 C1' H1' C2' 124.8 122.2
N1 C1' H1' O4' 242.4 237.7
C2' C1' H1' O4' 117.6 115.4
H1' C1' C2' C3' 266.4 265.1
H1' C1' C2' H2' 31.7 146.4
H1' C1' C2' H2'' 141.1 23.8
H1' C1' O4' C4' 108.1 78.5
C3' C2' C1' O4' 32.6 23.9
C3' C2' C1' H1' 266.4 265.1
C1' C2' C3' H2' 125.2 241.4
C1' C2' C3' H2'' 234.7 118.7
H2' C2' C3' H2'' 109.5 237.3
C4' C3' C2' O3' 243.9 241.2
C4' C3' C2' H3' 125.0 118.7
C2' C3' C4' O4' 35.7 336.2
C2' C3' C4' C5' 275.5 217.3
C2' C3' C4' H4' 159.2 94.9
O3' C3' C2' H3' 241.2 237.5
C2' C3' O3' HO3' 179.9 63.3
H2' C2' C1' O4' 157.8 265.3
H2' C2' C1' H1' 31.7 146.4
C1' C2' H2' C3' 242.6 114.6
C1' C2' H2' H2'' 121.3 237.3
C3' C2' H2' H2'' 238.7 122.7
H2' C2' C3' C4' 193.0 118.5
H2' C2' C3' O3' 309.1 237.3
H2' C2' C3' H3' 67.9 359.8
H2'' C2' C1' O4' 267.2 142.6
H2'' C2' C1' H1' 141.1 23.8
C1' C2' H2'' C3' 117.5 245.4
C1' C2' H2'' H2' 238.8 122.6
C3' C2' H2'' H2' 121.3 237.3
H2'' C2' C3' C4' 83.5 241.3
H2'' C2' C3' O3' 199.6 0.0
H2'' C2' C3' H3' 318.5 122.5
C1' O4' C4' C3' 344.7 40.3
C4' C3' C2' H2' 193.0 118.5
C4' C3' C2' H2'' 83.5 241.3
C2' C3' C4' O3' 120.6 118.7
C2' C3' C4' H3' 239.0 241.3
O3' C3' C4' H3' 118.5 122.6
C4' C3' O3' HO3' 293.0 178.1
O4' C4' C3' C5' 120.2 119.0
O4' C4' C3' H4' 236.5 241.3
C5' C4' C3' H4' 116.2 122.4
C3' C4' C5' O5' 283.7 176.9
C3' C4' C5' H5' 49.0 296.9
C3' C4' C5' H5'' 158.4 56.9
O3' C3' C2' H2' 309.1 237.3
O3' C3' C2' H2'' 199.6 0.0
C2' C3' O3' C4' 246.9 245.2
C2' C3' O3' H3' 121.6 122.5
C4' C3' O3' H3' 234.7 237.4
O3' C3' C4' O4' 275.1 217.5
O3' C3' C4' C5' 154.9 98.6
O3' C3' C4' H4' 38.6 336.2
H3' C3' C2' H2' 67.9 359.8
H3' C3' C2' H2'' 318.5 122.5
C2' C3' H3' C4' 116.6 114.8
C2' C3' H3' O3' 236.2 237.5
C4' C3' H3' O3' 119.6 122.7
H3' C3' C4' O4' 156.7 94.9
H3' C3' C4' C5' 36.4 336.0
H3' C3' C4' H4' 280.2 213.6
H3' C3' O3' HO3' 58.3 300.8
C4' O4' C1' H1' 108.1 78.5
O4' C4' C3' O3' 275.1 217.5
O4' C4' C3' H3' 156.7 94.9
C3' C4' O4' C5' 235.5 240.8
C3' C4' O4' H4' 119.2 118.6
C5' C4' O4' H4' 243.7 237.8
O4' C4' C5' O5' 166.2 61.4
O4' C4' C5' H5' 291.5 181.4
O4' C4' C5' H5'' 40.9 301.4
C5' C4' C3' O3' 154.9 98.6
C5' C4' C3' H3' 36.4 336.0
C3' C4' C5' O4' 117.5 115.5
C3' C4' C5' H4' 241.0 237.7
O4' C4' C5' H4' 123.5 122.2
O5' C5' C4' H5' 234.7 240.0
O5' C5' C4' H5'' 125.3 120.0
C4' C5' O5' P 134.8 180.0
H5' C5' C4' H5'' 250.6 240.0
H4' C4' C3' O3' 38.6 336.2
H4' C4' C3' H3' 280.2 213.6
C3' C4' H4' O4' 243.3 244.8
C3' C4' H4' C5' 123.8 122.6
O4' C4' H4' C5' 240.5 237.8
H4' C4' C5' O5' 42.7 299.3
H4' C4' C5' H5' 168.0 59.2
H4' C4' C5' H5'' 277.4 179.2
HO3' O3' C3' H3' 58.3 300.8
O5' C5' C4' H4' 42.7 299.3
C4' C5' O5' H5' 125.2 120.0
C4' C5' O5' H5'' 234.8 240.0
H5' C5' O5' H5'' 109.5 120.0
C5' O5' P OP1 25.8 60.0
C5' O5' P OP2 266.0 180.0
C5' O5' P OP3 145.4 299.9
H5' C5' C4' H4' 168.0 59.2
C4' C5' H5' O5' 235.4 240.0
C4' C5' H5' H5'' 117.6 120.0
O5' C5' H5' H5'' 242.2 240.0
H5' C5' O5' P 9.6 60.0
H5'' C5' C4' H4' 277.4 179.2
C4' C5' H5'' O5' 124.6 120.0
C4' C5' H5'' H5' 242.4 240.0
O5' C5' H5'' H5' 117.7 120.0
H5'' C5' O5' P 260.1 300.0
P O5' C5' H5' 9.6 60.0
P O5' C5' H5'' 260.1 300.0
OP1 P O5' OP2 119.9 240.0
OP1 P O5' OP3 240.4 120.0
OP2 P O5' OP3 120.6 240.0
O5' P OP2 HOP2 180.0 180.0
O5' P OP3 HOP3 180.0 300.0
O5' P OP1 OP2 240.1 120.0
O5' P OP1 OP3 119.7 240.0
OP2 P OP1 OP3 239.6 120.0
OP1 P OP2 HOP2 61.1 300.0
OP1 P OP3 HOP3 298.7 180.0
O5' P OP2 OP1 118.9 240.0
O5' P OP2 OP3 239.3 120.0
OP1 P OP2 OP3 120.4 240.0
OP2 P OP3 HOP3 59.2 60.0
O5' P OP3 OP1 241.3 120.0
O5' P OP3 OP2 120.7 240.0
OP1 P OP3 OP2 239.5 120.0
OP3 P OP2 HOP2 300.7 60.0
HOP2 OP2 P OP3 300.7 60.0