PDB Chemical Component 5IC

Ideal Model

Chemical Description

Name 5-IODO-CYTIDINE-5'-MONOPHOSPHATE
Formula C9 H13 I N3 O8 P
Formal charge 0
Molecular weight 449.093 g/mol
Component type RNA LINKING
Nonstandard Parent Id C

Chemical features

Atom count 35
Chiral atom count 4
Chiral atoms C2' C3' C4' C1'
Observed leaving atoms OP3 HO3'
Bond count 36
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 4-amino-5-iodo-1-(5-O-phosphono-beta-D-arabinofuranosyl)pyrimidin-2(1H)-one
Systematic name (OpenEye OEToolkits) [(2R,3S,4S,5R)-5-(4-amino-5-iodo-2-oxo-pyrimidin-1-yl)-3,4-dihydroxy-oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) NC1=NC(=O)N(C=C1I)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2O
SMILES (CACTVS) NC1=NC(=O)N(C=C1I)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O
Stereo SMILES (OpenEye) C1=C(C(=NC(=O)N1[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)I
InChI descriptor InChI=1S/C9H13IN3O8P/c10-3-1-13(9(16)12-7(3)11)8-6(15)5(14)4(21-8)2-20-22(17,18)19/h1,4-6,8,14-15H,2H2,(H2,11,12,16)(H2,17,18,19)/t4-,5-,6?,8-/m1/s1
InChIKey descriptor CIUBKYYOJNFMQN-XTSMLKGCSA-N

Status Information

Last modified 2011-06-04
Created 2003-05-13
Release status REL
Processing site RCSB