data_5HV
# 
_chem_comp.id                                    5HV 
_chem_comp.name                                  
;N-[2-(diethylamino)ethyl]-2-{2-[(4-fluorobenzyl)sulfanyl]-4-oxo-4,5,6,7-tetrahydro-1H-cyclopenta[d]pyrimidin-1-yl}-N-{[
4'-(trifluoromethyl)biphenyl-4-yl]methyl}acetamide
;
_chem_comp.type                                  NON-POLYMER 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C36 H38 F4 N4 O2 S" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         Darapladib 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2015-09-28 
_chem_comp.pdbx_modified_date                    2020-06-17 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        666.771 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     5HV 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   Y 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        ? 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
5HV C01 C1  C 0 1 N N N ? ? ? -3.357 5.608  3.729  C01 5HV 1  
5HV C05 C2  C 0 1 N N N ? ? ? -3.173 5.236  2.256  C05 5HV 2  
5HV N08 N1  N 0 1 N N N ? ? ? -4.038 4.096  1.926  N08 5HV 3  
5HV C09 C3  C 0 1 N N N ? ? ? -5.457 4.468  2.018  C09 5HV 4  
5HV C12 C4  C 0 1 N N N ? ? ? -6.314 3.201  2.068  C12 5HV 5  
5HV C16 C5  C 0 1 N N N ? ? ? -3.720 3.560  0.596  C16 5HV 6  
5HV C19 C6  C 0 1 N N N ? ? ? -2.424 2.750  0.670  C19 5HV 7  
5HV N22 N2  N 0 1 N N N ? ? ? -2.166 2.122  -0.629 N22 5HV 8  
5HV C23 C7  C 0 1 N N N ? ? ? -1.377 2.830  -1.640 C23 5HV 9  
5HV C26 C8  C 0 1 Y N N ? ? ? 0.081  2.490  -1.469 C26 5HV 10 
5HV C27 C9  C 0 1 Y N N ? ? ? 0.619  1.406  -2.140 C27 5HV 11 
5HV C29 C10 C 0 1 Y N N ? ? ? 1.954  1.090  -1.987 C29 5HV 12 
5HV C31 C11 C 0 1 Y N N ? ? ? 2.760  1.864  -1.155 C31 5HV 13 
5HV C32 C12 C 0 1 Y N N ? ? ? 2.213  2.954  -0.482 C32 5HV 14 
5HV C34 C13 C 0 1 Y N N ? ? ? 0.878  3.265  -0.646 C34 5HV 15 
5HV C36 C14 C 0 1 Y N N ? ? ? 4.195  1.529  -0.987 C36 5HV 16 
5HV C37 C15 C 0 1 Y N N ? ? ? 5.001  2.303  -0.155 C37 5HV 17 
5HV C39 C16 C 0 1 Y N N ? ? ? 6.336  1.987  -0.002 C39 5HV 18 
5HV C41 C17 C 0 1 Y N N ? ? ? 6.874  0.904  -0.673 C41 5HV 19 
5HV C42 C18 C 0 1 Y N N ? ? ? 6.078  0.132  -1.501 C42 5HV 20 
5HV C44 C19 C 0 1 Y N N ? ? ? 4.741  0.435  -1.656 C44 5HV 21 
5HV C46 C20 C 0 1 N N N ? ? ? 8.332  0.563  -0.502 C46 5HV 22 
5HV F47 F1  F 0 1 N N N ? ? ? 8.481  -0.323 0.570  F47 5HV 23 
5HV F48 F2  F 0 1 N N N ? ? ? 8.811  -0.035 -1.673 F48 5HV 24 
5HV F49 F3  F 0 1 N N N ? ? ? 9.057  1.732  -0.245 F49 5HV 25 
5HV C50 C21 C 0 1 N N N ? ? ? -2.654 0.894  -0.893 C50 5HV 26 
5HV O51 O1  O 0 1 N N N ? ? ? -2.440 0.375  -1.968 O51 5HV 27 
5HV C52 C22 C 0 1 N N N ? ? ? -3.465 0.166  0.148  C52 5HV 28 
5HV N55 N3  N 0 1 N N N ? ? ? -3.877 -1.138 -0.378 N55 5HV 29 
5HV C56 C23 C 0 1 N N N ? ? ? -5.057 -1.253 -1.060 C56 5HV 30 
5HV C57 C24 C 0 1 N N N ? ? ? -6.103 -0.214 -1.397 C57 5HV 31 
5HV C60 C25 C 0 1 N N N ? ? ? -7.362 -1.023 -1.779 C60 5HV 32 
5HV C63 C26 C 0 1 N N N ? ? ? -6.750 -2.358 -2.258 C63 5HV 33 
5HV C66 C27 C 0 1 N N N ? ? ? -5.421 -2.457 -1.543 C66 5HV 34 
5HV C67 C28 C 0 1 N N N ? ? ? -4.567 -3.572 -1.329 C67 5HV 35 
5HV O68 O2  O 0 1 N N N ? ? ? -4.875 -4.673 -1.758 O68 5HV 36 
5HV N69 N4  N 0 1 N N N ? ? ? -3.421 -3.408 -0.655 N69 5HV 37 
5HV C70 C29 C 0 1 N N N ? ? ? -3.079 -2.223 -0.190 C70 5HV 38 
5HV S71 S1  S 0 1 N N N ? ? ? -1.561 -2.041 0.686  S71 5HV 39 
5HV C72 C30 C 0 1 N N N ? ? ? -0.957 -3.746 0.625  C72 5HV 40 
5HV C75 C31 C 0 1 Y N N ? ? ? 0.370  -3.834 1.334  C75 5HV 41 
5HV C76 C32 C 0 1 Y N N ? ? ? 1.543  -3.632 0.631  C76 5HV 42 
5HV C78 C33 C 0 1 Y N N ? ? ? 2.761  -3.713 1.279  C78 5HV 43 
5HV C80 C34 C 0 1 Y N N ? ? ? 2.806  -3.996 2.634  C80 5HV 44 
5HV F81 F4  F 0 1 N N N ? ? ? 3.995  -4.074 3.269  F81 5HV 45 
5HV C82 C35 C 0 1 Y N N ? ? ? 1.630  -4.197 3.337  C82 5HV 46 
5HV C84 C36 C 0 1 Y N N ? ? ? 0.413  -4.111 2.687  C84 5HV 47 
5HV H1  H1  H 0 1 N N N ? ? ? -2.715 6.454  3.973  H1  5HV 48 
5HV H2  H2  H 0 1 N N N ? ? ? -4.398 5.878  3.908  H2  5HV 49 
5HV H3  H3  H 0 1 N N N ? ? ? -3.090 4.756  4.354  H3  5HV 50 
5HV H4  H4  H 0 1 N N N ? ? ? -3.440 6.088  1.630  H4  5HV 51 
5HV H5  H5  H 0 1 N N N ? ? ? -2.132 4.966  2.077  H5  5HV 52 
5HV H7  H7  H 0 1 N N N ? ? ? -5.621 5.053  2.923  H7  5HV 53 
5HV H8  H8  H 0 1 N N N ? ? ? -5.734 5.060  1.146  H8  5HV 54 
5HV H9  H9  H 0 1 N N N ? ? ? -7.367 3.477  2.122  H9  5HV 55 
5HV H10 H10 H 0 1 N N N ? ? ? -6.139 2.609  1.170  H10 5HV 56 
5HV H11 H11 H 0 1 N N N ? ? ? -6.046 2.615  2.947  H11 5HV 57 
5HV H12 H12 H 0 1 N N N ? ? ? -4.532 2.917  0.259  H12 5HV 58 
5HV H13 H13 H 0 1 N N N ? ? ? -3.593 4.384  -0.107 H13 5HV 59 
5HV H14 H14 H 0 1 N N N ? ? ? -1.596 3.411  0.925  H14 5HV 60 
5HV H15 H15 H 0 1 N N N ? ? ? -2.521 1.978  1.433  H15 5HV 61 
5HV H16 H16 H 0 1 N N N ? ? ? -1.706 2.529  -2.634 H16 5HV 62 
5HV H17 H17 H 0 1 N N N ? ? ? -1.515 3.905  -1.522 H17 5HV 63 
5HV H18 H18 H 0 1 N N N ? ? ? -0.007 0.807  -2.785 H18 5HV 64 
5HV H19 H19 H 0 1 N N N ? ? ? 2.372  0.244  -2.512 H19 5HV 65 
5HV H20 H20 H 0 1 N N N ? ? ? 2.833  3.558  0.165  H20 5HV 66 
5HV H21 H21 H 0 1 N N N ? ? ? 0.454  4.112  -0.127 H21 5HV 67 
5HV H22 H22 H 0 1 N N N ? ? ? 4.582  3.150  0.369  H22 5HV 68 
5HV H23 H23 H 0 1 N N N ? ? ? 6.962  2.586  0.643  H23 5HV 69 
5HV H24 H24 H 0 1 N N N ? ? ? 6.504  -0.713 -2.023 H24 5HV 70 
5HV H25 H25 H 0 1 N N N ? ? ? 4.120  -0.171 -2.298 H25 5HV 71 
5HV H26 H26 H 0 1 N N N ? ? ? -2.862 0.023  1.044  H26 5HV 72 
5HV H27 H27 H 0 1 N N N ? ? ? -4.350 0.753  0.395  H27 5HV 73 
5HV H28 H28 H 0 1 N N N ? ? ? -6.306 0.415  -0.530 H28 5HV 74 
5HV H29 H29 H 0 1 N N N ? ? ? -5.774 0.396  -2.238 H29 5HV 75 
5HV H30 H30 H 0 1 N N N ? ? ? -8.004 -1.177 -0.911 H30 5HV 76 
5HV H31 H31 H 0 1 N N N ? ? ? -7.910 -0.534 -2.584 H31 5HV 77 
5HV H32 H32 H 0 1 N N N ? ? ? -7.394 -3.191 -1.978 H32 5HV 78 
5HV H33 H33 H 0 1 N N N ? ? ? -6.600 -2.340 -3.337 H33 5HV 79 
5HV H34 H34 H 0 1 N N N ? ? ? -1.675 -4.404 1.115  H34 5HV 80 
5HV H35 H35 H 0 1 N N N ? ? ? -0.835 -4.051 -0.414 H35 5HV 81 
5HV H36 H36 H 0 1 N N N ? ? ? 1.508  -3.412 -0.426 H36 5HV 82 
5HV H37 H37 H 0 1 N N N ? ? ? 3.677  -3.556 0.730  H37 5HV 83 
5HV H38 H38 H 0 1 N N N ? ? ? 1.664  -4.418 4.394  H38 5HV 84 
5HV H39 H39 H 0 1 N N N ? ? ? -0.504 -4.265 3.236  H39 5HV 85 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
5HV O68 C67 DOUB N N 1  
5HV C63 C60 SING N N 2  
5HV C63 C66 SING N N 3  
5HV C60 C57 SING N N 4  
5HV C67 C66 SING N N 5  
5HV C67 N69 SING N N 6  
5HV C66 C56 DOUB N N 7  
5HV C57 C56 SING N N 8  
5HV C56 N55 SING N N 9  
5HV N69 C70 DOUB N N 10 
5HV N55 C70 SING N N 11 
5HV N55 C52 SING N N 12 
5HV C70 S71 SING N N 13 
5HV C12 C09 SING N N 14 
5HV O51 C50 DOUB N N 15 
5HV C72 S71 SING N N 16 
5HV C72 C75 SING N N 17 
5HV C52 C50 SING N N 18 
5HV C50 N22 SING N N 19 
5HV C09 N08 SING N N 20 
5HV C75 C84 DOUB Y N 21 
5HV C75 C76 SING Y N 22 
5HV C84 C82 SING Y N 23 
5HV C16 N08 SING N N 24 
5HV C16 C19 SING N N 25 
5HV N22 C19 SING N N 26 
5HV N22 C23 SING N N 27 
5HV N08 C05 SING N N 28 
5HV C76 C78 DOUB Y N 29 
5HV C82 C80 DOUB Y N 30 
5HV C05 C01 SING N N 31 
5HV C23 C26 SING N N 32 
5HV C78 C80 SING Y N 33 
5HV C80 F81 SING N N 34 
5HV C34 C26 DOUB Y N 35 
5HV C34 C32 SING Y N 36 
5HV C26 C27 SING Y N 37 
5HV C32 C31 DOUB Y N 38 
5HV C27 C29 DOUB Y N 39 
5HV C31 C29 SING Y N 40 
5HV C31 C36 SING N N 41 
5HV C44 C36 DOUB Y N 42 
5HV C44 C42 SING Y N 43 
5HV C36 C37 SING Y N 44 
5HV C42 C41 DOUB Y N 45 
5HV C37 C39 DOUB Y N 46 
5HV C41 C39 SING Y N 47 
5HV C41 C46 SING N N 48 
5HV F48 C46 SING N N 49 
5HV C46 F47 SING N N 50 
5HV C46 F49 SING N N 51 
5HV C01 H1  SING N N 52 
5HV C01 H2  SING N N 53 
5HV C01 H3  SING N N 54 
5HV C05 H4  SING N N 55 
5HV C05 H5  SING N N 56 
5HV C09 H7  SING N N 57 
5HV C09 H8  SING N N 58 
5HV C12 H9  SING N N 59 
5HV C12 H10 SING N N 60 
5HV C12 H11 SING N N 61 
5HV C16 H12 SING N N 62 
5HV C16 H13 SING N N 63 
5HV C19 H14 SING N N 64 
5HV C19 H15 SING N N 65 
5HV C23 H16 SING N N 66 
5HV C23 H17 SING N N 67 
5HV C27 H18 SING N N 68 
5HV C29 H19 SING N N 69 
5HV C32 H20 SING N N 70 
5HV C34 H21 SING N N 71 
5HV C37 H22 SING N N 72 
5HV C39 H23 SING N N 73 
5HV C42 H24 SING N N 74 
5HV C44 H25 SING N N 75 
5HV C52 H26 SING N N 76 
5HV C52 H27 SING N N 77 
5HV C57 H28 SING N N 78 
5HV C57 H29 SING N N 79 
5HV C60 H30 SING N N 80 
5HV C60 H31 SING N N 81 
5HV C63 H32 SING N N 82 
5HV C63 H33 SING N N 83 
5HV C72 H34 SING N N 84 
5HV C72 H35 SING N N 85 
5HV C76 H36 SING N N 86 
5HV C78 H37 SING N N 87 
5HV C82 H38 SING N N 88 
5HV C84 H39 SING N N 89 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
5HV SMILES           ACDLabs              12.01 "CCN(CC)CCN(Cc2ccc(c1ccc(C(F)(F)F)cc1)cc2)C(=O)CN3C(=NC(C4=C3CCC4)=O)SCc5ccc(cc5)F"                                                                                                                   
5HV InChI            InChI                1.03  "InChI=1S/C36H38F4N4O2S/c1-3-42(4-2)20-21-43(22-25-8-12-27(13-9-25)28-14-16-29(17-15-28)36(38,39)40)33(45)23-44-32-7-5-6-31(32)34(46)41-35(44)47-24-26-10-18-30(37)19-11-26/h8-19H,3-7,20-24H2,1-2H3" 
5HV InChIKey         InChI                1.03  WDPFJWLDPVQCAJ-UHFFFAOYSA-N                                                                                                                                                                           
5HV SMILES_CANONICAL CACTVS               3.385 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(F)cc5"                                                                                                                   
5HV SMILES           CACTVS               3.385 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(F)cc5"                                                                                                                   
5HV SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(cc5)F"                                                                                                                   
5HV SMILES           "OpenEye OEToolkits" 1.9.2 "CCN(CC)CCN(Cc1ccc(cc1)c2ccc(cc2)C(F)(F)F)C(=O)CN3C4=C(CCC4)C(=O)N=C3SCc5ccc(cc5)F"                                                                                                                   
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
5HV "SYSTEMATIC NAME" ACDLabs              12.01 "N-[2-(diethylamino)ethyl]-2-{2-[(4-fluorobenzyl)sulfanyl]-4-oxo-4,5,6,7-tetrahydro-1H-cyclopenta[d]pyrimidin-1-yl}-N-{[4'-(trifluoromethyl)biphenyl-4-yl]methyl}acetamide"             
5HV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-(diethylamino)ethyl]-2-[2-[(4-fluorophenyl)methylsulfanyl]-4-oxidanylidene-6,7-dihydro-5H-cyclopenta[d]pyrimidin-1-yl]-N-[[4-[4-(trifluoromethyl)phenyl]phenyl]methyl]ethanamide" 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      5HV 
_pdbx_chem_comp_synonyms.name         Darapladib 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
5HV "Create component" 2015-09-28 RCSB 
5HV "Initial release"  2016-06-15 RCSB 
5HV "Modify synonyms"  2020-06-05 PDBE 
# 
