PDB Chemical Component 5HU

Ideal Model

Chemical Description

Name 5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE
Formula C10 H15 N2 O9 P
Formal charge 0
Molecular weight 338.208 g/mol
Component type DNA LINKING
Nonstandard Parent Id DU

Chemical features

Atom count 37
Chiral atom count 3
Chiral atoms C4' C3' C1'
Observed leaving atoms OP3 HO3'
Bond count 38
Aromatic bond count 0

Chemical Identifiers

Systematic name (ACDLabs) 2'-deoxy-5-(hydroxymethyl)uridine 5'-(dihydrogen phosphate)
Systematic name (OpenEye OEToolkits) [(2R,3S,5R)-3-hydroxy-5-[5-(hydroxymethyl)-2,4-dioxo-pyrimidin-1-yl]oxolan-2-yl]methyl dihydrogen phosphate

Chemical Descriptors

Stereo SMILES (CACTVS) OCC1=CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(O)=O)O2)C(=O)NC1=O
SMILES (CACTVS) OCC1=CN([CH]2C[CH](O)[CH](CO[P](O)(O)=O)O2)C(=O)NC1=O
Stereo SMILES (OpenEye) C1[C@@H]([C@H](O[C@H]1N2C=C(C(=O)NC2=O)CO)COP(=O)(O)O)O
InChI descriptor InChI=1S/C10H15N2O9P/c13-3-5-2-12(10(16)11-9(5)15)8-1-6(14)7(21-8)4-20-22(17,18)19/h2,6-8,13-14H,1,3-4H2,(H,11,15,16)(H2,17,18,19)/t6-,7+,8+/m0/s1
InChIKey descriptor WEBVWKFGRVLCNS-XLPZGREQSA-N

Status Information

Last modified 2011-06-04
Created 2002-09-26
Release status REL
Model PDB code 1MRS
Processing site RCSB