PDB Chemical Component 5HU

The following tables include covalent bond distance, bond angle and torsion angle values for the experimental model and ideal geometries stored in the definition for this chemical component.

Bond Distances for 5HU

Atom I Atom J Distance (Experimental Model) Distance (Ideal Model)
P OP1 1.605 1.480
P OP2 1.685 1.611
P OP3 1.664 1.609
P O5' 1.561 1.610
OP2 HO2P 0.950 0.967
OP3 HO3P 0.950 0.966
O5' C5' 1.371 1.429
C5' C4' 1.550 1.530
C5' H5' 1.100 1.090
C5' H5'' 1.100 1.090
C4' O4' 1.432 1.445
C4' C3' 1.573 1.549
C4' HC4' 1.100 1.091
O4' C1' 1.413 1.438
C3' O3' 1.497 1.429
C3' C2' 1.562 1.547
C3' HC3' 1.100 1.090
O3' HO3' 0.949 0.967
C2' C1' 1.483 1.541
C2' H2' 1.099 1.090
C2' H2'' 1.100 1.090
C1' N1 1.474 1.465
C1' HC1' 1.100 1.091
N1 C2 1.378 1.345
N1 C6 1.366 1.369
C2 O2 1.291 1.216
C2 N3 1.340 1.346
N3 C4 1.349 1.348
N3 HN3 1.000 0.970
C4 O4 1.327 1.217
C4 C5 1.416 1.416
C5 C5A 1.497 1.507
C5 C6 1.395 1.351
C5A O5B 1.053 1.429
C5A H5A1 1.101 1.090
C5A H5A2 1.100 1.091
C6 HC6 1.080 1.079
O5B HO5B 0.950 0.967

Bond Angles for 5HU

Atom I Atom J Atom K Angle (Experimental Model) Angle (Ideal Model)
OP1 P OP2 110.1 109.5
OP1 P OP3 111.2 109.5
OP1 P O5' 110.4 109.4
OP2 P OP3 108.6 109.5
OP2 P O5' 104.5 109.5
P OP2 HO2P 109.5 106.7
OP3 P O5' 111.9 109.5
P OP3 HO3P 109.5 106.8
P O5' C5' 132.2 106.8
O5' C5' C4' 105.7 109.5
O5' C5' H5' 111.5 109.4
O5' C5' H5'' 110.8 109.5
C4' C5' H5' 111.5 109.5
C4' C5' H5'' 110.7 109.5
C5' C4' O4' 118.8 110.8
C5' C4' C3' 122.1 110.6
C5' C4' HC4' 89.1 110.5
H5' C5' H5'' 106.6 109.4
O4' C4' C3' 98.8 103.6
O4' C4' HC4' 116.5 110.5
C4' O4' C1' 114.1 106.9
C3' C4' HC4' 112.7 110.6
C4' C3' O3' 123.7 111.0
C4' C3' C2' 95.6 102.1
C4' C3' HC3' 116.2 110.9
O4' C1' C2' 102.5 107.4
O4' C1' N1 105.3 109.9
O4' C1' HC1' 120.9 109.9
O3' C3' C2' 122.6 110.9
O3' C3' HC3' 83.1 110.7
C3' O3' HO3' 109.5 106.8
C2' C3' HC3' 117.5 110.9
C3' C2' C1' 102.7 104.2
C3' C2' H2' 113.2 110.5
C3' C2' H2'' 111.8 110.5
C1' C2' H2' 113.2 110.5
C1' C2' H2'' 111.8 110.5
C2' C1' N1 120.5 109.9
C2' C1' HC1' 105.8 109.9
H2' C2' H2'' 104.3 110.5
N1 C1' HC1' 103.2 109.9
C1' N1 C2 114.7 119.7
C1' N1 C6 125.2 119.7
C2 N1 C6 120.1 120.6
N1 C2 O2 120.0 119.5
N1 C2 N3 121.4 121.0
N1 C6 C5 119.8 119.7
N1 C6 HC6 120.1 120.2
O2 C2 N3 118.6 119.5
C2 N3 C4 120.0 120.3
C2 N3 HN3 120.0 119.9
C4 N3 HN3 120.0 119.8
N3 C4 O4 117.9 120.3
N3 C4 C5 121.0 119.4
O4 C4 C5 121.1 120.3
C4 C5 C5A 119.3 120.5
C4 C5 C6 117.7 119.1
C5A C5 C6 123.0 120.4
C5 C5A O5B 104.7 109.5
C5 C5A H5A1 112.1 109.5
C5 C5A H5A2 111.1 109.4
C5 C6 HC6 120.1 120.2
O5B C5A H5A1 112.1 109.5
O5B C5A H5A2 111.1 109.5
C5A O5B HO5B 109.5 106.8
H5A1 C5A H5A2 105.8 109.5

Torsion Angles for 5HU

Atom I Atom J Atom K Atom L Angle (Experimental Model) Angle (Ideal Model)
OP2 P OP1 OP3 239.6 120.1
OP2 P OP1 O5' 114.8 240.0
OP1 P OP2 HO2P 246.9 299.9
OP3 P OP1 O5' 235.2 120.0
OP1 P OP3 HO3P 167.6 180.0
OP1 P O5' C5' 272.9 55.0
OP1 P OP2 OP3 121.9 239.9
OP1 P OP2 O5' 241.5 120.0
OP3 P OP2 O5' 119.6 240.0
OP2 P OP3 HO3P 288.8 59.9
OP2 P O5' C5' 154.6 174.9
OP1 P OP3 OP2 238.7 120.0
OP1 P OP3 O5' 123.9 240.0
OP2 P OP3 O5' 245.2 120.0
OP3 P OP2 HO2P 125.0 60.0
OP3 P O5' C5' 37.3 295.0
OP1 P O5' OP2 118.3 240.0
OP1 P O5' OP3 235.6 120.0
OP2 P O5' OP3 117.3 240.0
O5' P OP2 HO2P 5.4 180.0
O5' P OP3 HO3P 43.6 299.9
P O5' C5' C4' 182.2 180.0
P O5' C5' H5' 60.7 60.0
P O5' C5' H5'' 302.1 300.1
HO2P OP2 P OP3 125.0 60.0
HO2P OP2 P O5' 5.4 180.0
HO3P OP3 P O5' 43.6 299.9
C4' C5' O5' H5' 121.4 120.0
C4' C5' O5' H5'' 240.0 239.9
O5' C5' C4' O4' 224.2 70.7
O5' C5' C4' C3' 347.6 185.0
O5' C5' C4' HC4' 104.1 307.9
H5' C5' O5' H5'' 118.6 119.9
O5' C5' C4' H5' 238.6 240.0
O5' C5' C4' H5'' 120.0 120.1
H5' C5' C4' H5'' 241.4 240.1
O4' C4' C5' C3' 236.6 245.7
O4' C4' C5' HC4' 120.1 122.8
C5' C4' O4' C1' 104.5 158.5
C3' C4' C5' HC4' 243.5 237.1
C5' C4' C3' O3' 137.2 86.1
C5' C4' C3' C2' 273.0 204.3
C5' C4' C3' HC3' 37.5 322.5
O5' C5' H5' C4' 118.0 120.0
O5' C5' H5' H5'' 239.0 240.0
C4' C5' H5' H5'' 121.0 120.0
H5' C5' C4' O4' 345.6 190.7
H5' C5' C4' C3' 109.0 305.0
H5' C5' C4' HC4' 225.5 67.9
O5' C5' H5'' C4' 243.0 239.9
O5' C5' H5'' H5' 121.5 119.9
C4' C5' H5'' H5' 238.5 240.0
H5'' C5' C4' O4' 104.2 310.7
H5'' C5' C4' C3' 227.6 65.0
H5'' C5' C4' HC4' 344.1 187.8
O4' C4' C5' H5' 345.6 190.7
O4' C4' C5' H5'' 104.2 310.7
C5' C4' O4' C3' 134.3 118.7
C5' C4' O4' HC4' 255.2 237.2
C3' C4' O4' HC4' 120.9 118.5
O4' C4' C3' O3' 269.4 204.8
O4' C4' C3' C2' 45.2 323.1
O4' C4' C3' HC3' 169.7 81.3
C4' O4' C1' C2' 359.0 333.7
C4' O4' C1' N1 232.2 214.2
C4' O4' C1' HC1' 116.2 93.2
C3' C4' C5' H5' 109.0 305.0
C3' C4' C5' H5'' 227.6 65.0
C5' C4' C3' O4' 227.8 241.3
C5' C4' C3' HC4' 104.1 122.8
O4' C4' C3' HC4' 236.3 241.6
C3' C4' O4' C1' 330.2 39.9
O3' C3' C4' C2' 224.2 241.8
O3' C3' C4' HC3' 99.7 123.5
C4' C3' O3' HO3' 76.0 174.2
C2' C3' C4' HC3' 235.5 241.8
C4' C3' C2' C1' 311.8 20.9
C4' C3' C2' H2' 189.3 262.2
C4' C3' C2' H2'' 71.8 139.5
HC4' C4' C5' H5' 225.5 67.9
HC4' C4' C5' H5'' 344.1 187.8
C5' C4' HC4' O4' 122.0 123.0
C5' C4' HC4' C3' 235.3 237.1
O4' C4' HC4' C3' 113.2 114.1
HC4' C4' O4' C1' 209.2 281.4
HC4' C4' C3' O3' 33.1 323.3
HC4' C4' C3' C2' 168.9 81.5
HC4' C4' C3' HC3' 293.4 199.7
C1' O4' C4' C3' 330.2 39.9
C1' O4' C4' HC4' 209.2 281.4
C3' C2' C1' O4' 32.1 2.0
O4' C1' C2' H2' 154.6 120.6
O4' C1' C2' H2'' 272.1 243.2
C2' C1' O4' N1 126.8 119.5
C2' C1' O4' HC1' 242.8 240.5
N1 C1' O4' HC1' 116.0 121.0
O4' C1' N1 C2 243.7 53.3
O4' C1' N1 C6 63.9 233.3
O3' C3' C4' HC4' 33.1 323.3
C4' C3' O3' C2' 124.6 112.8
C4' C3' O3' HC3' 242.9 236.4
C2' C3' O3' HC3' 118.4 123.6
O3' C3' C2' C1' 88.3 139.2
O3' C3' C2' H2' 325.8 20.5
O3' C3' C2' H2'' 208.3 257.8
C2' C3' C4' HC4' 168.9 81.5
C4' C3' C2' O3' 223.5 241.7
C4' C3' C2' HC3' 123.5 118.2
O4' C1' C2' C3' 32.1 2.0
O3' C3' C2' HC3' 260.0 236.5
C2' C3' O3' HO3' 311.5 61.4
C1' C2' C3' H2' 122.4 118.7
C1' C2' C3' H2'' 240.0 241.3
C3' C2' C1' N1 148.4 121.5
C3' C2' C1' HC1' 264.6 242.5
H2' C2' C3' H2'' 117.5 122.7
HC3' C3' C4' HC4' 293.4 199.7
C4' C3' HC3' O3' 124.3 123.7
C4' C3' HC3' C2' 247.6 247.2
O3' C3' HC3' C2' 123.3 123.6
HC3' C3' O3' HO3' 193.1 297.8
HC3' C3' C2' C1' 188.2 262.7
HC3' C3' C2' H2' 65.8 144.0
HC3' C3' C2' H2'' 308.3 21.3
HO3' O3' C3' C2' 311.5 61.4
HO3' O3' C3' HC3' 193.1 297.8
O4' C1' C2' N1 243.7 240.5
O4' C1' C2' HC1' 127.5 119.5
C1' C2' C3' HC3' 188.2 262.7
C3' C2' C1' H2' 237.5 241.3
C3' C2' C1' H2'' 120.0 118.7
H2' C2' C1' H2'' 242.5 237.4
N1 C1' C2' HC1' 243.9 239.0
C2' C1' N1 C2 128.8 295.3
C2' C1' N1 C6 309.0 115.3
H2' C2' C3' HC3' 65.8 144.0
C3' C2' H2' C1' 116.4 114.8
C3' C2' H2' H2'' 238.2 237.3
C1' C2' H2' H2'' 121.8 122.6
H2' C2' C1' N1 270.9 240.1
H2' C2' C1' HC1' 27.0 1.2
H2'' C2' C3' HC3' 308.3 21.3
C3' C2' H2'' C1' 245.5 245.2
C3' C2' H2'' H2' 122.7 122.7
C1' C2' H2'' H2' 237.3 237.4
H2'' C2' C1' N1 28.4 2.7
H2'' C2' C1' HC1' 144.6 123.8
O4' C1' N1 C2' 114.9 118.0
O4' C1' N1 HC1' 232.4 239.0
N1 C1' C2' H2' 270.9 240.1
N1 C1' C2' H2'' 28.4 2.7
C2' C1' N1 HC1' 117.5 121.0
C2 N1 C1' C6 179.8 180.0
C1' N1 C2 O2 0.4 0.1
C1' N1 C2 N3 180.4 179.9
C1' N1 C6 C5 179.7 180.0
C1' N1 C6 HC6 359.7 360.0
O4' C1' HC1' C2' 244.4 242.0
O4' C1' HC1' N1 117.0 121.0
HC1' C1' C2' H2' 27.0 1.2
HC1' C1' C2' H2'' 144.6 123.8
C2' C1' HC1' N1 232.6 239.0
HC1' C1' N1 C2 11.3 174.3
HC1' C1' N1 C6 191.5 354.3
C2 N1 C1' HC1' 11.3 174.3
C1' N1 C2 C6 180.2 180.0
C2 N1 C6 C5 359.9 0.1
C2 N1 C6 HC6 179.9 180.0
O2 C2 N1 N3 179.9 180.1
N1 C2 N3 C4 359.9 359.9
N1 C2 N3 HN3 179.9 180.0
C6 N1 C1' HC1' 191.5 354.3
C1' N1 C6 C2 179.7 180.0
C6 N1 C2 O2 180.1 180.0
C6 N1 C2 N3 0.2 359.9
C4 C5 C6 N1 359.9 0.2
C5A C5 C6 N1 179.8 180.0
C5 C6 N1 HC6 180.0 180.1
O2 C2 N1 C6 180.1 180.0
N1 C2 O2 N3 180.1 179.9
O2 C2 N3 C4 180.0 179.7
O2 C2 N3 HN3 360.0 359.9
N3 C2 N1 C6 0.2 359.9
N1 C2 N3 O2 179.9 180.1
C4 N3 C2 HN3 180.0 179.9
C2 N3 C4 O4 179.9 180.0
C2 N3 C4 C5 359.9 0.4
C2 N3 C4 HN3 180.0 180.1
O4 C4 N3 C5 180.0 179.6
N3 C4 C5 C5A 180.3 179.8
N3 C4 C5 C6 0.2 359.6
C2 N3 HN3 C4 180.0 179.9
HN3 N3 C4 O4 359.9 359.8
HN3 N3 C4 C5 179.9 180.2
O4 C4 N3 HN3 359.9 359.8
N3 C4 O4 C5 180.0 180.4
O4 C4 C5 C5A 0.2 0.2
O4 C4 C5 C6 180.2 180.0
N1 C6 C5 C4 359.9 0.2
C5 C4 N3 HN3 179.9 180.2
N3 C4 C5 O4 180.0 179.6
C5A C5 C4 C6 180.0 180.2
C4 C5 C5A O5B 91.3 179.8
C4 C5 C5A H5A1 329.5 59.7
C4 C5 C5A H5A2 211.3 299.8
C4 C5 C6 HC6 179.8 180.2
N1 C6 C5 C5A 179.8 180.0
C4 C5 C5A C6 179.9 179.8
C5A C5 C6 HC6 359.8 0.0
O5B C5A C5 H5A1 121.8 120.0
O5B C5A C5 H5A2 240.0 240.0
C5 C5A O5B HO5B 10.4 180.0
H5A1 C5A C5 H5A2 118.2 120.0
N1 C6 C5 HC6 180.0 179.9
C4 C5 C6 C5A 180.0 180.2
C6 C5 C5A O5B 271.4 360.0
C6 C5 C5A H5A1 149.6 240.0
C6 C5 C5A H5A2 31.4 120.0
O5B C5A C5 C6 271.4 360.0
C5 C5A O5B H5A1 238.2 240.0
C5 C5A O5B H5A2 120.0 120.0
H5A1 C5A O5B H5A2 241.8 240.0
H5A1 C5A C5 C6 149.6 240.0
C5 C5A H5A1 O5B 117.4 120.0
C5 C5A H5A1 H5A2 238.7 240.0
O5B C5A H5A1 H5A2 121.3 120.0
H5A1 C5A O5B HO5B 132.2 300.0
H5A2 C5A C5 C6 31.4 120.0
C5 C5A H5A2 O5B 243.9 240.0
C5 C5A H5A2 H5A1 122.0 120.0
O5B C5A H5A2 H5A1 238.1 240.0
H5A2 C5A O5B HO5B 250.4 60.0
N1 C6 HC6 C5 180.0 180.1
HO5B O5B C5A H5A1 132.2 300.0
HO5B O5B C5A H5A2 250.4 60.0